Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 Y_RNA.508-201ENST00000384502 114 ntBASIC2.46□□□□□ -2.02
USP48Q86UV5 AC025033.1-201ENST00000463883 194 ntBASIC2.46□□□□□ -2.02
USP48Q86UV5 RNA5SP182-201ENST00000516064 82 ntBASIC2.46□□□□□ -2.02
USP48Q86UV5 RNU6-830P-201ENST00000516353 107 ntBASIC2.46□□□□□ -2.02
USP48Q86UV5 RNU6-113P-201ENST00000516653 101 ntBASIC2.46□□□□□ -2.02
USP48Q86UV5 MIR4713-201ENST00000582691 75 ntBASIC2.46□□□□□ -2.02
USP48Q86UV5 AL121890.5-201ENST00000620848 304 ntBASIC2.46□□□□□ -2.02
USP48Q86UV5 ZNF355P-201ENST00000427301 3216 ntBASIC2.46□□□□□ -2.02
USP48Q86UV5 RNU6-349P-201ENST00000362402 107 ntBASIC2.45□□□□□ -2.02
USP48Q86UV5 RNU6-661P-201ENST00000362409 107 ntBASIC2.45□□□□□ -2.02
USP48Q86UV5 RNU6-203P-201ENST00000384038 104 ntBASIC2.45□□□□□ -2.02
USP48Q86UV5 Y_RNA.528-201ENST00000384575 108 ntBASIC2.45□□□□□ -2.02
USP48Q86UV5 AC087499.4-201ENST00000448505 178 ntBASIC2.45□□□□□ -2.02
USP48Q86UV5 MIR4299-201ENST00000577899 72 ntBASIC2.45□□□□□ -2.02
USP48Q86UV5 AL137067.1-201ENST00000615933 120 ntBASIC2.45□□□□□ -2.02
USP48Q86UV5 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.44□□□□□ -2.02
USP48Q86UV5 RNU6-457P-201ENST00000363999 107 ntBASIC2.44□□□□□ -2.02
USP48Q86UV5 RNU6-1189P-201ENST00000383958 107 ntBASIC2.44□□□□□ -2.02
USP48Q86UV5 Y_RNA.440-201ENST00000384120 114 ntBASIC2.44□□□□□ -2.02
USP48Q86UV5 MIR136-201ENST00000385207 82 ntBASIC2.44□□□□□ -2.02
USP48Q86UV5 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
USP48Q86UV5 BTF3P4-201ENST00000418852 495 ntBASIC2.44□□□□□ -2.02
USP48Q86UV5 SNORA31.4-201ENST00000516049 129 ntBASIC2.44□□□□□ -2.02
USP48Q86UV5 RNU1-40P-201ENST00000516816 164 ntBASIC2.44□□□□□ -2.02
USP48Q86UV5 RNU1-97P-201ENST00000516872 164 ntBASIC2.44□□□□□ -2.02
USP48Q86UV5 AL627230.6-201ENST00000611129 280 ntBASIC2.44□□□□□ -2.02
USP48Q86UV5 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
USP48Q86UV5 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.43□□□□□ -2.02
USP48Q86UV5 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.43□□□□□ -2.02
USP48Q86UV5 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.43□□□□□ -2.02
USP48Q86UV5 SNORA2.2-201ENST00000365473 135 ntBASIC2.43□□□□□ -2.02
USP48Q86UV5 MIR194-1-201ENST00000384892 85 ntBASIC2.43□□□□□ -2.02
USP48Q86UV5 MT-TI-201ENST00000387365 69 ntBASIC2.43□□□□□ -2.02
USP48Q86UV5 JTBP1-201ENST00000441314 247 ntBASIC2.43□□□□□ -2.02
USP48Q86UV5 RNU6-240P-201ENST00000516098 97 ntBASIC2.43□□□□□ -2.02
USP48Q86UV5 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC2.43□□□□□ -2.02
USP48Q86UV5 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.43□□□□□ -2.02
USP48Q86UV5 RNU6-439P-201ENST00000384188 106 ntBASIC2.42□□□□□ -2.02
USP48Q86UV5 Y_RNA.494-201ENST00000384432 111 ntBASIC2.42□□□□□ -2.02
USP48Q86UV5 Y_RNA.549-201ENST00000384657 102 ntBASIC2.42□□□□□ -2.02
USP48Q86UV5 MIR516B2-201ENST00000385190 85 ntBASIC2.42□□□□□ -2.02
USP48Q86UV5 RNU6-321P-201ENST00000410912 106 ntBASIC2.42□□□□□ -2.02
USP48Q86UV5 AC004965.1-201ENST00000413033 213 ntBASIC2.42□□□□□ -2.02
USP48Q86UV5 AL445685.2-201ENST00000422551 342 ntBASIC2.42□□□□□ -2.02
USP48Q86UV5 RPS27P21-201ENST00000486977 252 ntBASIC2.42□□□□□ -2.02
USP48Q86UV5 MIR337-201ENST00000362281 93 ntBASIC2.41□□□□□ -2.02
USP48Q86UV5 RNU6-880P-201ENST00000384526 107 ntBASIC2.41□□□□□ -2.02
USP48Q86UV5 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC2.41□□□□□ -2.02
USP48Q86UV5 RNA5SP445-201ENST00000515889 115 ntBASIC2.41□□□□□ -2.02
USP48Q86UV5 AP003484.1-201ENST00000530974 250 ntBASIC2.41□□□□□ -2.02
USP48Q86UV5 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.41□□□□□ -2.02
USP48Q86UV5 MIR4679-2-201ENST00000578358 77 ntBASIC2.41□□□□□ -2.02
USP48Q86UV5 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.41□□□□□ -2.02
USP48Q86UV5 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.41□□□□□ -2.02
USP48Q86UV5 MIR1267-201ENST00000408723 78 ntBASIC2.4□□□□□ -2.03
USP48Q86UV5 RNA5SP136-201ENST00000410906 107 ntBASIC2.4□□□□□ -2.03
USP48Q86UV5 AL356379.1-201ENST00000414105 126 ntBASIC2.4□□□□□ -2.03
USP48Q86UV5 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC2.4□□□□□ -2.03
USP48Q86UV5 MIR514B-201ENST00000516774 80 ntBASIC2.4□□□□□ -2.03
USP48Q86UV5 HSPE1P19-201ENST00000603327 295 ntBASIC2.4□□□□□ -2.03
USP48Q86UV5 MIR8070-201ENST00000616510 88 ntBASIC2.4□□□□□ -2.03
USP48Q86UV5 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
USP48Q86UV5 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
USP48Q86UV5 Y_RNA.281-201ENST00000364774 94 ntBASIC2.39□□□□□ -2.03
USP48Q86UV5 RNU6-106P-201ENST00000384405 107 ntBASIC2.39□□□□□ -2.03
USP48Q86UV5 MIR526A1-201ENST00000384897 85 ntBASIC2.39□□□□□ -2.03
USP48Q86UV5 RNA5SP89-201ENST00000410300 108 ntBASIC2.39□□□□□ -2.03
USP48Q86UV5 AL161935.2-201ENST00000414627 60 ntBASIC2.39□□□□□ -2.03
USP48Q86UV5 AC245517.4-201ENST00000448601 281 ntBASIC2.39□□□□□ -2.03
USP48Q86UV5 SNORD13-201ENST00000459299 104 ntBASIC2.39□□□□□ -2.03
USP48Q86UV5 AC007012.1-201ENST00000567192 175 ntBASIC2.39□□□□□ -2.03
USP48Q86UV5 AC095038.3-201ENST00000634439 195 ntBASIC2.39□□□□□ -2.03
USP48Q86UV5 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.39□□□□□ -2.03
USP48Q86UV5 AL596028.1-201ENST00000326971 197 ntBASIC2.38□□□□□ -2.03
USP48Q86UV5 RNA5SP190-201ENST00000365222 118 ntBASIC2.38□□□□□ -2.03
USP48Q86UV5 MIR499A-201ENST00000384903 122 ntBASIC2.38□□□□□ -2.03
USP48Q86UV5 MIR570-201ENST00000384917 97 ntBASIC2.38□□□□□ -2.03
USP48Q86UV5 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
USP48Q86UV5 U8.17-201ENST00000391292 132 ntBASIC2.38□□□□□ -2.03
USP48Q86UV5 COX6CP6-201ENST00000490840 228 ntBASIC2.38□□□□□ -2.03
USP48Q86UV5 SUMO2P16-201ENST00000519475 264 ntBASIC2.38□□□□□ -2.03
USP48Q86UV5 SNRPGP19-201ENST00000603826 189 ntBASIC2.38□□□□□ -2.03
USP48Q86UV5 MIR8074-201ENST00000615081 81 ntBASIC2.38□□□□□ -2.03
USP48Q86UV5 RNU6-1104P-201ENST00000384723 104 ntBASIC2.37□□□□□ -2.03
USP48Q86UV5 SNORA18.7-201ENST00000516910 131 ntBASIC2.37□□□□□ -2.03
USP48Q86UV5 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.37□□□□□ -2.03
USP48Q86UV5 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.37□□□□□ -2.03
USP48Q86UV5 Y_RNA.116-201ENST00000363292 103 ntBASIC2.36□□□□□ -2.03
USP48Q86UV5 SNORA1.2-201ENST00000365189 134 ntBASIC2.36□□□□□ -2.03
USP48Q86UV5 Y_RNA.351-201ENST00000365436 96 ntBASIC2.36□□□□□ -2.03
USP48Q86UV5 MIR513A1-201ENST00000385138 129 ntBASIC2.36□□□□□ -2.03
USP48Q86UV5 AL627390.1-201ENST00000396055 340 ntBASIC2.36□□□□□ -2.03
USP48Q86UV5 AC003989.2-201ENST00000440224 169 ntBASIC2.36□□□□□ -2.03
USP48Q86UV5 TRMT112P2-201ENST00000512910 132 ntBASIC2.36□□□□□ -2.03
USP48Q86UV5 RNU6-168P-201ENST00000516189 101 ntBASIC2.36□□□□□ -2.03
USP48Q86UV5 RNY4P20-201ENST00000516678 93 ntBASIC2.36□□□□□ -2.03
USP48Q86UV5 SNORA44.1-201ENST00000517031 108 ntBASIC2.36□□□□□ -2.03
USP48Q86UV5 FAM106DP-201ENST00000586416 501 ntBASIC2.36□□□□□ -2.03
USP48Q86UV5 AL096840.1-201ENST00000603287 93 ntBASIC2.36□□□□□ -2.03
USP48Q86UV5 uc_338.28-201ENST00000612082 187 ntBASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms