Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 Y_RNA.690-201ENST00000516603 95 ntBASIC1.48□□□□□ -2.17
SOX2P48431 RNU6-250P-201ENST00000516958 103 ntBASIC1.48□□□□□ -2.17
SOX2P48431 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.48□□□□□ -2.17
SOX2P48431 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.48□□□□□ -2.17
SOX2P48431 Y_RNA.537-201ENST00000384626 109 ntBASIC1.47□□□□□ -2.17
SOX2P48431 MIR934-201ENST00000401241 83 ntBASIC1.47□□□□□ -2.17
SOX2P48431 AL603914.1-201ENST00000401964 204 ntBASIC1.47□□□□□ -2.17
SOX2P48431 AC027119.1-201ENST00000440877 241 ntBASIC1.47□□□□□ -2.17
SOX2P48431 RNU7-67P-201ENST00000459003 62 ntBASIC1.47□□□□□ -2.17
SOX2P48431 RNU6-998P-201ENST00000515894 101 ntBASIC1.47□□□□□ -2.17
SOX2P48431 RNU2-13P-201ENST00000515909 113 ntBASIC1.47□□□□□ -2.17
SOX2P48431 RNU6-970P-201ENST00000516312 107 ntBASIC1.47□□□□□ -2.17
SOX2P48431 Y_RNA.686-201ENST00000516548 134 ntBASIC1.47□□□□□ -2.17
SOX2P48431 RNU2-60P-201ENST00000517290 128 ntBASIC1.47□□□□□ -2.17
SOX2P48431 MIR4422-201ENST00000581938 83 ntBASIC1.47□□□□□ -2.17
SOX2P48431 MIR4791-201ENST00000607666 84 ntBASIC1.47□□□□□ -2.17
SOX2P48431 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.47□□□□□ -2.17
SOX2P48431 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.47□□□□□ -2.17
SOX2P48431 TUG1_4.1-201ENST00000619464 181 ntBASIC1.47□□□□□ -2.17
SOX2P48431 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
SOX2P48431 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.46□□□□□ -2.17
SOX2P48431 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.46□□□□□ -2.18
SOX2P48431 MIR342-201ENST00000362212 99 ntBASIC1.46□□□□□ -2.18
SOX2P48431 RNU1-133P-201ENST00000364867 167 ntBASIC1.46□□□□□ -2.18
SOX2P48431 SNORA51.10-201ENST00000384418 136 ntBASIC1.46□□□□□ -2.18
SOX2P48431 MIR570-201ENST00000384917 97 ntBASIC1.46□□□□□ -2.18
SOX2P48431 SNORA40.18-201ENST00000391200 128 ntBASIC1.46□□□□□ -2.18
SOX2P48431 RNU1-78P-201ENST00000391248 165 ntBASIC1.46□□□□□ -2.18
SOX2P48431 MTND4LP9-201ENST00000427694 174 ntBASIC1.46□□□□□ -2.18
SOX2P48431 AL035398.1-201ENST00000430869 322 ntBASIC1.46□□□□□ -2.18
SOX2P48431 RPS29P29-201ENST00000456396 171 ntBASIC1.46□□□□□ -2.18
SOX2P48431 AC108210.2-201ENST00000503681 201 ntBASIC1.46□□□□□ -2.18
SOX2P48431 RNA5SP236-201ENST00000516169 116 ntBASIC1.46□□□□□ -2.18
SOX2P48431 Y_RNA.692-201ENST00000516627 105 ntBASIC1.46□□□□□ -2.18
SOX2P48431 Y_RNA.757-201ENST00000578934 114 ntBASIC1.46□□□□□ -2.18
SOX2P48431 MIR3910-1-201ENST00000580936 111 ntBASIC1.46□□□□□ -2.18
SOX2P48431 U7.2-201ENST00000607576 63 ntBASIC1.46□□□□□ -2.18
SOX2P48431 AC243994.1-201ENST00000618627 109 ntBASIC1.46□□□□□ -2.18
SOX2P48431 AC008133.2-201ENST00000624540 351 ntBASIC1.46□□□□□ -2.18
SOX2P48431 MIR302B-201ENST00000362188 73 ntBASIC1.45□□□□□ -2.18
SOX2P48431 Y_RNA.586-201ENST00000391146 98 ntBASIC1.45□□□□□ -2.18
SOX2P48431 RPL39P39-201ENST00000455840 151 ntBASIC1.45□□□□□ -2.18
SOX2P48431 RNU1-98P-201ENST00000458992 160 ntBASIC1.45□□□□□ -2.18
SOX2P48431 snoU13.15-201ENST00000459407 104 ntBASIC1.45□□□□□ -2.18
SOX2P48431 RPL30P7-201ENST00000479312 323 ntBASIC1.45□□□□□ -2.18
SOX2P48431 RNU7-53P-201ENST00000516705 60 ntBASIC1.45□□□□□ -2.18
SOX2P48431 RNU6-789P-201ENST00000517105 102 ntBASIC1.45□□□□□ -2.18
SOX2P48431 MIR4769-201ENST00000584126 77 ntBASIC1.45□□□□□ -2.18
SOX2P48431 AC011603.4-201ENST00000611325 277 ntBASIC1.45□□□□□ -2.18
SOX2P48431 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.45□□□□□ -2.18
SOX2P48431 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.45□□□□□ -2.18
SOX2P48431 AC084768.2-201ENST00000622736 221 ntBASIC1.45□□□□□ -2.18
SOX2P48431 AC091932.4-201ENST00000623386 200 ntBASIC1.45□□□□□ -2.18
SOX2P48431 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.45□□□□□ -2.18
SOX2P48431 AL596211.1-201ENST00000569873 2277 ntBASIC1.45□□□□□ -2.18
SOX2P48431 SNORA24-201ENST00000384096 131 ntBASIC1.44□□□□□ -2.18
SOX2P48431 RNU6-997P-201ENST00000384725 107 ntBASIC1.44□□□□□ -2.18
SOX2P48431 AC245517.4-201ENST00000448601 281 ntBASIC1.44□□□□□ -2.18
SOX2P48431 RNA5SP445-201ENST00000515889 115 ntBASIC1.44□□□□□ -2.18
SOX2P48431 RNU5E-3P-201ENST00000515913 68 ntBASIC1.44□□□□□ -2.18
SOX2P48431 RNU6-947P-201ENST00000516264 106 ntBASIC1.44□□□□□ -2.18
SOX2P48431 RNU6-958P-201ENST00000516995 106 ntBASIC1.44□□□□□ -2.18
SOX2P48431 AL022345.2-201ENST00000606307 135 ntBASIC1.44□□□□□ -2.18
SOX2P48431 MIR8081-201ENST00000611533 95 ntBASIC1.44□□□□□ -2.18
SOX2P48431 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.44□□□□□ -2.18
SOX2P48431 RNU6-309P-201ENST00000364573 106 ntBASIC1.43□□□□□ -2.18
SOX2P48431 MIR539-201ENST00000365690 78 ntBASIC1.43□□□□□ -2.18
SOX2P48431 RNU6-482P-201ENST00000391068 107 ntBASIC1.43□□□□□ -2.18
SOX2P48431 snoU13.23-201ENST00000458863 104 ntBASIC1.43□□□□□ -2.18
SOX2P48431 RNU2-11P-201ENST00000459191 187 ntBASIC1.43□□□□□ -2.18
SOX2P48431 RNU7-41P-201ENST00000515917 61 ntBASIC1.43□□□□□ -2.18
SOX2P48431 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.43□□□□□ -2.18
SOX2P48431 AC132825.6-201ENST00000638861 357 ntBASIC1.43□□□□□ -2.18
SOX2P48431 AC092881.1-201ENST00000638218 2733 ntBASIC1.43□□□□□ -2.18
SOX2P48431 RNA5SP48-201ENST00000363969 126 ntBASIC1.42□□□□□ -2.18
SOX2P48431 MIR583-201ENST00000384846 75 ntBASIC1.42□□□□□ -2.18
SOX2P48431 RNA5SP182-201ENST00000516064 82 ntBASIC1.42□□□□□ -2.18
SOX2P48431 RNU1-41P-201ENST00000516161 162 ntBASIC1.42□□□□□ -2.18
SOX2P48431 RNU1-48P-201ENST00000516400 162 ntBASIC1.42□□□□□ -2.18
SOX2P48431 RNU6-113P-201ENST00000516653 101 ntBASIC1.42□□□□□ -2.18
SOX2P48431 MIR3664-201ENST00000579074 99 ntBASIC1.42□□□□□ -2.18
SOX2P48431 MIR3121-201ENST00000579680 77 ntBASIC1.42□□□□□ -2.18
SOX2P48431 AL096861.1-201ENST00000610899 123 ntBASIC1.42□□□□□ -2.18
SOX2P48431 MIR4251-201ENST00000635819 61 ntBASIC1.42□□□□□ -2.18
SOX2P48431 RPS27P16-201ENST00000425758 201 ntBASIC1.41□□□□□ -2.18
SOX2P48431 RNU7-73P-201ENST00000458743 63 ntBASIC1.41□□□□□ -2.18
SOX2P48431 RNU6-1211P-201ENST00000459179 105 ntBASIC1.41□□□□□ -2.18
SOX2P48431 snoU13.16-201ENST00000459350 104 ntBASIC1.41□□□□□ -2.18
SOX2P48431 AL512310.8-201ENST00000550183 120 ntBASIC1.41□□□□□ -2.18
SOX2P48431 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.4□□□□□ -2.18
SOX2P48431 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
SOX2P48431 SNORD114-1-201ENST00000362705 72 ntBASIC1.4□□□□□ -2.19
SOX2P48431 RNU6-508P-201ENST00000363231 103 ntBASIC1.4□□□□□ -2.19
SOX2P48431 RNU6-81P-201ENST00000365608 104 ntBASIC1.4□□□□□ -2.19
SOX2P48431 RNY1P6-201ENST00000384193 109 ntBASIC1.4□□□□□ -2.19
SOX2P48431 Y_RNA.651-201ENST00000459380 103 ntBASIC1.4□□□□□ -2.19
SOX2P48431 AC023790.1-201ENST00000482174 347 ntBASIC1.4□□□□□ -2.19
SOX2P48431 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.4□□□□□ -2.19
SOX2P48431 RNU6-902P-201ENST00000517212 91 ntBASIC1.4□□□□□ -2.19
SOX2P48431 AL121890.5-201ENST00000620848 304 ntBASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms