Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.81□□□□□ -1.96
MSX1P28360 AC008885.1-201ENST00000514930 301 ntBASIC2.81□□□□□ -1.96
MSX1P28360 MIR3126-201ENST00000577443 74 ntBASIC2.81□□□□□ -1.96
MSX1P28360 MIR4672-201ENST00000583126 81 ntBASIC2.81□□□□□ -1.96
MSX1P28360 RPL12P50-201ENST00000603116 116 ntBASIC2.81□□□□□ -1.96
MSX1P28360 MIR8055-201ENST00000610739 97 ntBASIC2.81□□□□□ -1.96
MSX1P28360 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.81□□□□□ -1.96
MSX1P28360 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.8□□□□□ -1.96
MSX1P28360 RNU6-776P-201ENST00000364403 104 ntBASIC2.8□□□□□ -1.96
MSX1P28360 RNU6-1022P-201ENST00000365049 104 ntBASIC2.8□□□□□ -1.96
MSX1P28360 MIR34C-201ENST00000384831 77 ntBASIC2.8□□□□□ -1.96
MSX1P28360 MIR520A-201ENST00000384862 85 ntBASIC2.8□□□□□ -1.96
MSX1P28360 MIR526A1-201ENST00000384897 85 ntBASIC2.8□□□□□ -1.96
MSX1P28360 RN7SKP220-201ENST00000410611 288 ntBASIC2.8□□□□□ -1.96
MSX1P28360 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.8□□□□□ -1.96
MSX1P28360 SEPT14P17-201ENST00000617978 177 ntBASIC2.8□□□□□ -1.96
MSX1P28360 AL513423.1-201ENST00000621695 132 ntBASIC2.8□□□□□ -1.96
MSX1P28360 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
MSX1P28360 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.8□□□□□ -1.96
MSX1P28360 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.79□□□□□ -1.96
MSX1P28360 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.79□□□□□ -1.96
MSX1P28360 MIR22-201ENST00000362190 85 ntBASIC2.79□□□□□ -1.96
MSX1P28360 RNU1-91P-201ENST00000364746 163 ntBASIC2.79□□□□□ -1.96
MSX1P28360 Y_RNA.354-201ENST00000365448 111 ntBASIC2.79□□□□□ -1.96
MSX1P28360 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.79□□□□□ -1.96
MSX1P28360 AC021506.2-201ENST00000612354 169 ntBASIC2.79□□□□□ -1.96
MSX1P28360 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
MSX1P28360 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
MSX1P28360 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
MSX1P28360 RNU6-1244P-201ENST00000363614 108 ntBASIC2.78□□□□□ -1.96
MSX1P28360 SNORA71.1-201ENST00000364523 117 ntBASIC2.78□□□□□ -1.96
MSX1P28360 RNU1-148P-201ENST00000384472 162 ntBASIC2.78□□□□□ -1.96
MSX1P28360 Y_RNA.567-201ENST00000384736 106 ntBASIC2.78□□□□□ -1.96
MSX1P28360 MIR660-201ENST00000385235 97 ntBASIC2.78□□□□□ -1.96
MSX1P28360 RNA5SP492-201ENST00000411330 114 ntBASIC2.78□□□□□ -1.96
MSX1P28360 AC092427.1-202ENST00000430569 476 ntBASIC2.78□□□□□ -1.96
MSX1P28360 AC245166.1-201ENST00000521012 253 ntBASIC2.78□□□□□ -1.96
MSX1P28360 AC107016.2-201ENST00000547968 190 ntBASIC2.78□□□□□ -1.96
MSX1P28360 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.77□□□□□ -1.97
MSX1P28360 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.77□□□□□ -1.97
MSX1P28360 RNU6-865P-201ENST00000364772 107 ntBASIC2.77□□□□□ -1.97
MSX1P28360 RNA5SP126-201ENST00000365092 109 ntBASIC2.77□□□□□ -1.97
MSX1P28360 SNORD67-201ENST00000390833 111 ntBASIC2.77□□□□□ -1.97
MSX1P28360 MIR548G-201ENST00000408442 89 ntBASIC2.77□□□□□ -1.97
MSX1P28360 RNU2-7P-201ENST00000410794 178 ntBASIC2.77□□□□□ -1.97
MSX1P28360 AC073261.1-201ENST00000429409 121 ntBASIC2.77□□□□□ -1.97
MSX1P28360 RPL23AP6-201ENST00000446637 472 ntBASIC2.77□□□□□ -1.97
MSX1P28360 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.77□□□□□ -1.97
MSX1P28360 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.77□□□□□ -1.97
MSX1P28360 RNVU1-2-201ENST00000516326 135 ntBASIC2.77□□□□□ -1.97
MSX1P28360 RNA5SP137-201ENST00000516833 135 ntBASIC2.77□□□□□ -1.97
MSX1P28360 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC2.77□□□□□ -1.97
MSX1P28360 RNU6-90P-201ENST00000606352 106 ntBASIC2.77□□□□□ -1.97
MSX1P28360 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.77□□□□□ -1.97
MSX1P28360 MIR8065-201ENST00000620577 100 ntBASIC2.77□□□□□ -1.97
MSX1P28360 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC2.77□□□□□ -1.97
MSX1P28360 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
MSX1P28360 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
MSX1P28360 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.76□□□□□ -1.97
MSX1P28360 Y_RNA.316-201ENST00000365118 111 ntBASIC2.76□□□□□ -1.97
MSX1P28360 Y_RNA.448-201ENST00000384185 108 ntBASIC2.76□□□□□ -1.97
MSX1P28360 SNORA46-201ENST00000384762 135 ntBASIC2.76□□□□□ -1.97
MSX1P28360 MIR1283-2-201ENST00000408621 87 ntBASIC2.76□□□□□ -1.97
MSX1P28360 UQCRHP3-201ENST00000451503 251 ntBASIC2.76□□□□□ -1.97
MSX1P28360 RN7SL20P-201ENST00000488827 297 ntBASIC2.76□□□□□ -1.97
MSX1P28360 SNORD67.1-201ENST00000516618 108 ntBASIC2.76□□□□□ -1.97
MSX1P28360 RNA5SP437-201ENST00000517249 129 ntBASIC2.76□□□□□ -1.97
MSX1P28360 MIR4709-201ENST00000577272 72 ntBASIC2.76□□□□□ -1.97
MSX1P28360 Z97988.1-201ENST00000637697 135 ntBASIC2.76□□□□□ -1.97
MSX1P28360 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
MSX1P28360 MIR449A-201ENST00000362113 91 ntBASIC2.75□□□□□ -1.97
MSX1P28360 SNORD56.5-201ENST00000364281 72 ntBASIC2.75□□□□□ -1.97
MSX1P28360 SNORA54-201ENST00000384281 123 ntBASIC2.75□□□□□ -1.97
MSX1P28360 RNU6-1086P-201ENST00000410930 100 ntBASIC2.75□□□□□ -1.97
MSX1P28360 HMGN2P3-201ENST00000433603 273 ntBASIC2.75□□□□□ -1.97
MSX1P28360 HMGN2P5-201ENST00000436882 273 ntBASIC2.75□□□□□ -1.97
MSX1P28360 AL161932.1-201ENST00000437408 146 ntBASIC2.75□□□□□ -1.97
MSX1P28360 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC2.75□□□□□ -1.97
MSX1P28360 RNU7-79P-201ENST00000516082 62 ntBASIC2.75□□□□□ -1.97
MSX1P28360 SNORA74.3-201ENST00000517108 154 ntBASIC2.75□□□□□ -1.97
MSX1P28360 SUB1P4-201ENST00000566062 339 ntBASIC2.75□□□□□ -1.97
MSX1P28360 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.75□□□□□ -1.97
MSX1P28360 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.75□□□□□ -1.97
MSX1P28360 AP006437.1-201ENST00000641440 3685 ntBASIC2.74□□□□□ -1.97
MSX1P28360 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
MSX1P28360 SNORD114-10-201ENST00000363409 72 ntBASIC2.74□□□□□ -1.97
MSX1P28360 RNU6-851P-201ENST00000384565 107 ntBASIC2.74□□□□□ -1.97
MSX1P28360 SNORA48.1-201ENST00000390879 135 ntBASIC2.74□□□□□ -1.97
MSX1P28360 RNA5SP465-201ENST00000391195 109 ntBASIC2.74□□□□□ -1.97
MSX1P28360 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.74□□□□□ -1.97
MSX1P28360 Z96811.1-201ENST00000445880 108 ntBASIC2.74□□□□□ -1.97
MSX1P28360 RNU1-98P-201ENST00000458992 160 ntBASIC2.74□□□□□ -1.97
MSX1P28360 RN7SL633P-201ENST00000488974 297 ntBASIC2.74□□□□□ -1.97
MSX1P28360 FAM106DP-201ENST00000586416 501 ntBASIC2.74□□□□□ -1.97
MSX1P28360 MIR6715A-201ENST00000615929 79 ntBASIC2.74□□□□□ -1.97
MSX1P28360 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.74□□□□□ -1.97
MSX1P28360 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
MSX1P28360 AC005336.3-201ENST00000623833 2679 ntBASIC2.73□□□□□ -1.97
MSX1P28360 AC073325.2-201ENST00000339545 159 ntBASIC2.73□□□□□ -1.97
MSX1P28360 Y_RNA.94-201ENST00000363068 106 ntBASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 166.7 ms