Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 MIR452-201ENST00000385020 85 ntBASIC2.76□□□□□ -1.97
COL8A1P27658 AC105272.1-201ENST00000438604 198 ntBASIC2.76□□□□□ -1.97
COL8A1P27658 MIR4474-201ENST00000579189 78 ntBASIC2.76□□□□□ -1.97
COL8A1P27658 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
COL8A1P27658 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.75□□□□□ -1.97
COL8A1P27658 SNORA70B-201ENST00000384210 135 ntBASIC2.75□□□□□ -1.97
COL8A1P27658 MIR504-201ENST00000385065 83 ntBASIC2.75□□□□□ -1.97
COL8A1P27658 MIR516B2-201ENST00000385190 85 ntBASIC2.75□□□□□ -1.97
COL8A1P27658 MIR136-201ENST00000385207 82 ntBASIC2.75□□□□□ -1.97
COL8A1P27658 HMGN1P33-201ENST00000432945 451 ntBASIC2.75□□□□□ -1.97
COL8A1P27658 RNU7-85P-201ENST00000458851 63 ntBASIC2.75□□□□□ -1.97
COL8A1P27658 AC026333.2-201ENST00000542164 106 ntBASIC2.75□□□□□ -1.97
COL8A1P27658 MIR4484-201ENST00000582855 83 ntBASIC2.75□□□□□ -1.97
COL8A1P27658 MIR8055-201ENST00000610739 97 ntBASIC2.75□□□□□ -1.97
COL8A1P27658 MIR8065-201ENST00000620577 100 ntBASIC2.75□□□□□ -1.97
COL8A1P27658 AC110079.1-202ENST00000635213 138 ntBASIC2.75□□□□□ -1.97
COL8A1P27658 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.75□□□□□ -1.97
COL8A1P27658 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.75□□□□□ -1.97
COL8A1P27658 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
COL8A1P27658 SNORA7.4-201ENST00000384249 137 ntBASIC2.74□□□□□ -1.97
COL8A1P27658 U8.16-201ENST00000391279 133 ntBASIC2.74□□□□□ -1.97
COL8A1P27658 snoU13.26-201ENST00000459452 105 ntBASIC2.74□□□□□ -1.97
COL8A1P27658 AC018868.1-201ENST00000491307 315 ntBASIC2.74□□□□□ -1.97
COL8A1P27658 RNU4ATAC3P-201ENST00000516699 126 ntBASIC2.74□□□□□ -1.97
COL8A1P27658 AL355297.2-201ENST00000604792 129 ntBASIC2.74□□□□□ -1.97
COL8A1P27658 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC2.74□□□□□ -1.97
COL8A1P27658 MIR7515-201ENST00000637837 67 ntBASIC2.74□□□□□ -1.97
COL8A1P27658 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC2.74□□□□□ -1.97
COL8A1P27658 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
COL8A1P27658 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
COL8A1P27658 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC2.73□□□□□ -1.97
COL8A1P27658 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
COL8A1P27658 Y_RNA.264-201ENST00000364665 102 ntBASIC2.73□□□□□ -1.97
COL8A1P27658 Y_RNA.537-201ENST00000384626 109 ntBASIC2.73□□□□□ -1.97
COL8A1P27658 MIR635-201ENST00000384830 98 ntBASIC2.73□□□□□ -1.97
COL8A1P27658 MIR520H-201ENST00000385126 88 ntBASIC2.73□□□□□ -1.97
COL8A1P27658 SNORA26.7-201ENST00000391288 122 ntBASIC2.73□□□□□ -1.97
COL8A1P27658 SNORA11.4-201ENST00000408823 129 ntBASIC2.73□□□□□ -1.97
COL8A1P27658 RNU6-141P-201ENST00000410499 105 ntBASIC2.73□□□□□ -1.97
COL8A1P27658 RN7SKP220-201ENST00000410611 288 ntBASIC2.73□□□□□ -1.97
COL8A1P27658 snoU13.16-201ENST00000459350 104 ntBASIC2.73□□□□□ -1.97
COL8A1P27658 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.73□□□□□ -1.97
COL8A1P27658 MIR548AR-201ENST00000582191 57 ntBASIC2.73□□□□□ -1.97
COL8A1P27658 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.73□□□□□ -1.97
COL8A1P27658 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.73□□□□□ -1.97
COL8A1P27658 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
COL8A1P27658 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
COL8A1P27658 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
COL8A1P27658 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
COL8A1P27658 MIR30E-201ENST00000362104 92 ntBASIC2.72□□□□□ -1.97
COL8A1P27658 RNU6-1072P-201ENST00000384703 107 ntBASIC2.72□□□□□ -1.97
COL8A1P27658 RNU6-443P-201ENST00000384780 107 ntBASIC2.72□□□□□ -1.97
COL8A1P27658 SNORD67-201ENST00000390833 111 ntBASIC2.72□□□□□ -1.97
COL8A1P27658 SNORD28B-201ENST00000390993 75 ntBASIC2.72□□□□□ -1.97
COL8A1P27658 SNORD77.2-201ENST00000391045 68 ntBASIC2.72□□□□□ -1.97
COL8A1P27658 MIR1262-201ENST00000408276 93 ntBASIC2.72□□□□□ -1.97
COL8A1P27658 Y_RNA.596-201ENST00000410462 109 ntBASIC2.72□□□□□ -1.97
COL8A1P27658 AC093423.1-201ENST00000440817 142 ntBASIC2.72□□□□□ -1.97
COL8A1P27658 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC2.72□□□□□ -1.97
COL8A1P27658 Y_RNA.648-201ENST00000459455 110 ntBASIC2.72□□□□□ -1.97
COL8A1P27658 AC092185.1-201ENST00000491371 97 ntBASIC2.72□□□□□ -1.97
COL8A1P27658 SNORA31.10-201ENST00000516482 106 ntBASIC2.72□□□□□ -1.97
COL8A1P27658 RNA5SP168-201ENST00000516642 112 ntBASIC2.72□□□□□ -1.97
COL8A1P27658 AL355596.1-201ENST00000565399 3996 ntBASIC2.72□□□□□ -1.97
COL8A1P27658 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.72□□□□□ -1.97
COL8A1P27658 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC2.72□□□□□ -1.97
COL8A1P27658 AC022149.2-201ENST00000621061 203 ntBASIC2.72□□□□□ -1.97
COL8A1P27658 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
COL8A1P27658 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC2.72□□□□□ -1.97
COL8A1P27658 AC245060.5-201ENST00000610778 3293 ntBASIC2.72□□□□□ -1.97
COL8A1P27658 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
COL8A1P27658 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC2.72□□□□□ -1.97
COL8A1P27658 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
COL8A1P27658 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.71□□□□□ -1.97
COL8A1P27658 RNU6-499P-201ENST00000365615 107 ntBASIC2.71□□□□□ -1.98
COL8A1P27658 RNU6-1067P-201ENST00000384752 107 ntBASIC2.71□□□□□ -1.98
COL8A1P27658 MIR196B-201ENST00000384852 84 ntBASIC2.71□□□□□ -1.98
COL8A1P27658 AL034345.1-201ENST00000407768 123 ntBASIC2.71□□□□□ -1.98
COL8A1P27658 RN7SL442P-201ENST00000473804 320 ntBASIC2.71□□□□□ -1.98
COL8A1P27658 RPS29P11-201ENST00000496507 171 ntBASIC2.71□□□□□ -1.98
COL8A1P27658 RNU7-12P-201ENST00000516030 62 ntBASIC2.71□□□□□ -1.98
COL8A1P27658 RNU6-303P-201ENST00000517091 106 ntBASIC2.71□□□□□ -1.98
COL8A1P27658 AP000753.3-201ENST00000604083 169 ntBASIC2.71□□□□□ -1.98
COL8A1P27658 uc_338.1-201ENST00000612113 180 ntBASIC2.71□□□□□ -1.98
COL8A1P27658 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.7□□□□□ -1.98
COL8A1P27658 RNA5SP493-201ENST00000364115 91 ntBASIC2.7□□□□□ -1.98
COL8A1P27658 RNU6-811P-201ENST00000384069 107 ntBASIC2.7□□□□□ -1.98
COL8A1P27658 SNORD15B-201ENST00000384714 146 ntBASIC2.7□□□□□ -1.98
COL8A1P27658 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
COL8A1P27658 AC074348.1-201ENST00000426503 132 ntBASIC2.7□□□□□ -1.98
COL8A1P27658 AC093850.1-201ENST00000454121 251 ntBASIC2.7□□□□□ -1.98
COL8A1P27658 HMGN1P18-201ENST00000457642 277 ntBASIC2.7□□□□□ -1.98
COL8A1P27658 SNORD123-201ENST00000459473 70 ntBASIC2.7□□□□□ -1.98
COL8A1P27658 Y_RNA.676-201ENST00000516393 96 ntBASIC2.7□□□□□ -1.98
COL8A1P27658 SNORA70.19-201ENST00000516717 90 ntBASIC2.7□□□□□ -1.98
COL8A1P27658 SNORD14A-201ENST00000606526 91 ntBASIC2.7□□□□□ -1.98
COL8A1P27658 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC2.7□□□□□ -1.98
COL8A1P27658 Z97988.1-201ENST00000637697 135 ntBASIC2.7□□□□□ -1.98
COL8A1P27658 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.7□□□□□ -1.98
COL8A1P27658 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms