Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 SNORD58A-201ENST00000383875 65 ntBASIC3.27□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 Y_RNA.430-201ENST00000384081 110 ntBASIC3.27□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 FO393413.1-201ENST00000402892 195 ntBASIC3.27□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 UCA1.1-201ENST00000620952 75 ntBASIC3.27□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 AL512310.12-203ENST00000640543 90 ntBASIC3.27□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.26□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 SNORA25.6-201ENST00000364121 118 ntBASIC3.26□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 MIR95-201ENST00000385072 81 ntBASIC3.26□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 U8.15-201ENST00000390947 134 ntBASIC3.26□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 RN7SL636P-201ENST00000497504 294 ntBASIC3.26□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 RNU7-28P-201ENST00000516759 62 ntBASIC3.26□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 RNU6-295P-201ENST00000516901 104 ntBASIC3.26□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 AL137847.3-201ENST00000611521 109 ntBASIC3.26□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.26□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 AGL-204ENST00000370161 6923 ntTSL 5 BASIC3.26□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 SNORD115-34-201ENST00000362441 82 ntBASIC3.25□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 SNORD115-12-201ENST00000362583 82 ntBASIC3.25□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 RNU6-1313P-201ENST00000362622 102 ntBASIC3.25□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 SNORD115-29-201ENST00000362834 82 ntBASIC3.25□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 SNORD115-9-201ENST00000362912 82 ntBASIC3.25□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 SNORD115-21-201ENST00000362963 81 ntBASIC3.25□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 SNORD115-14-201ENST00000363090 81 ntBASIC3.25□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 RNU6-509P-201ENST00000363519 107 ntBASIC3.25□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 SNORD115-41-201ENST00000363608 82 ntBASIC3.25□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 SNORD115-11-201ENST00000363616 82 ntBASIC3.25□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 SNORD115-5-201ENST00000363633 82 ntBASIC3.25□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 SNORD115-39-201ENST00000363694 82 ntBASIC3.25□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 SNORD115-4-201ENST00000363810 82 ntBASIC3.25□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 SNORD115-6-201ENST00000363942 82 ntBASIC3.25□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 SNORD115-42-201ENST00000364273 82 ntBASIC3.25□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 SNORA1.1-201ENST00000364671 133 ntBASIC3.25□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 SNORD115-15-201ENST00000364809 81 ntBASIC3.25□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 SNORD115-26-201ENST00000365067 82 ntBASIC3.25□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 SNORD115-10-201ENST00000365073 81 ntBASIC3.25□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 SNORD115-43-201ENST00000365503 82 ntBASIC3.25□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 SNORD115-36-201ENST00000365629 82 ntBASIC3.25□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC3.25□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 SNORA48.11-201ENST00000517015 89 ntBASIC3.25□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 AL359821.1-201ENST00000605519 182 ntBASIC3.25□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 MIR548BB-201ENST00000626714 66 ntBASIC3.25□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 WARS-244ENST00000627608 123 ntTSL 5 BASIC3.25□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 SNORD115-2-201ENST00000362842 82 ntBASIC3.24□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 RNU1-23P-201ENST00000363361 144 ntBASIC3.24□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 SNORD115-20-201ENST00000365099 82 ntBASIC3.24□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 RNU6-616P-201ENST00000384353 107 ntBASIC3.24□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 MIR218-1-201ENST00000384999 110 ntBASIC3.24□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 ATP5J2P3-201ENST00000451550 258 ntBASIC3.24□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 RNU6-1006P-201ENST00000516998 103 ntBASIC3.24□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 MIR6734-201ENST00000621166 68 ntBASIC3.24□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC3.24□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 AC092881.1-201ENST00000638218 2733 ntBASIC3.23□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 RNU1-91P-201ENST00000364746 163 ntBASIC3.23□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 SNORD21-201ENST00000383953 95 ntBASIC3.23□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 RNU6-424P-201ENST00000384367 105 ntBASIC3.23□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 CST2P1-201ENST00000425770 87 ntBASIC3.23□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 TRIAP1P1-201ENST00000427062 225 ntBASIC3.23□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 AC006483.1-201ENST00000487308 313 ntBASIC3.23□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 AL163195.1-201ENST00000496941 348 ntBASIC3.23□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 SNORD59.2-201ENST00000516873 68 ntBASIC3.23□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 AC090821.2-201ENST00000523552 176 ntBASIC3.23□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 AL356280.1-201ENST00000603614 379 ntBASIC3.23□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.23□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 SRIP3-201ENST00000413200 219 ntBASIC3.22□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC3.22□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 RPPH1-2P-201ENST00000516688 293 ntBASIC3.22□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC3.22□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 MIR3152-201ENST00000579801 74 ntBASIC3.22□□□□□ -1.89
SENP3-EIF4A1A0A087X0R7 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.21□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 RNU6-633P-201ENST00000362612 103 ntBASIC3.21□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 Y_RNA.191-201ENST00000363972 113 ntBASIC3.21□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 RNU2-48P-201ENST00000410694 191 ntBASIC3.21□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 AC026436.1-201ENST00000510537 270 ntBASIC3.21□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 SNORA31.4-201ENST00000516049 129 ntBASIC3.21□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 RNA5SP33-201ENST00000516687 98 ntBASIC3.21□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 IGLV3-17-201ENST00000519099 244 ntBASIC3.21□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 AC110079.1-202ENST00000635213 138 ntBASIC3.21□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 ICE2P2-201ENST00000483823 2787 ntBASIC3.21□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 MAPK10-322ENST00000641485 4530 ntBASIC3.2□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 Y_RNA.171-201ENST00000363760 102 ntBASIC3.2□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 Y_RNA.316-201ENST00000365118 111 ntBASIC3.2□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 RNU6-1319P-201ENST00000390855 104 ntBASIC3.2□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 RNU6-747P-201ENST00000390928 104 ntBASIC3.2□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 RNU6-241P-201ENST00000391148 104 ntBASIC3.2□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 RNU2-63P-201ENST00000410792 194 ntBASIC3.2□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 RNU6-177P-201ENST00000411257 104 ntBASIC3.2□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.2□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 MIR548AE2-201ENST00000583456 67 ntBASIC3.2□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.2□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 DEFA7P-201ENST00000382676 285 ntBASIC3.19□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 SNORA26.9-201ENST00000391322 122 ntBASIC3.19□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 RNU6-1328P-201ENST00000410938 106 ntBASIC3.19□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 AC245047.3-201ENST00000429428 127 ntBASIC3.19□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 AC114811.1-201ENST00000507207 168 ntBASIC3.19□□□□□ -1.9
SENP3-EIF4A1A0A087X0R7 RNU6-711P-201ENST00000517255 106 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 188.6 ms