Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 MIR3192-201ENST00000584920 77 ntBASIC1.27□□□□□ -2.21
HOXA1P49639 MIR342-201ENST00000362212 99 ntBASIC1.26□□□□□ -2.21
HOXA1P49639 Y_RNA.242-201ENST00000364473 110 ntBASIC1.26□□□□□ -2.21
HOXA1P49639 RNU6-449P-201ENST00000383914 107 ntBASIC1.26□□□□□ -2.21
HOXA1P49639 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.26□□□□□ -2.21
HOXA1P49639 snoU13.25-201ENST00000458945 104 ntBASIC1.26□□□□□ -2.21
HOXA1P49639 AC005840.1-201ENST00000498412 377 ntBASIC1.26□□□□□ -2.21
HOXA1P49639 RNU6-322P-201ENST00000516010 103 ntBASIC1.26□□□□□ -2.21
HOXA1P49639 SNORA18.4-201ENST00000516440 124 ntBASIC1.26□□□□□ -2.21
HOXA1P49639 SNORA25.15-201ENST00000516487 89 ntBASIC1.26□□□□□ -2.21
HOXA1P49639 RNU6-126P-201ENST00000516685 103 ntBASIC1.26□□□□□ -2.21
HOXA1P49639 RNU6-250P-201ENST00000516958 103 ntBASIC1.26□□□□□ -2.21
HOXA1P49639 RNU6-165P-201ENST00000517170 99 ntBASIC1.26□□□□□ -2.21
HOXA1P49639 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.26□□□□□ -2.21
HOXA1P49639 AC090821.2-201ENST00000523552 176 ntBASIC1.26□□□□□ -2.21
HOXA1P49639 MIR4764-201ENST00000580680 88 ntBASIC1.26□□□□□ -2.21
HOXA1P49639 MIR3683-201ENST00000580847 82 ntBASIC1.26□□□□□ -2.21
HOXA1P49639 AP001485.1-201ENST00000604799 199 ntBASIC1.26□□□□□ -2.21
HOXA1P49639 SNORA25.3-201ENST00000363205 127 ntBASIC1.25□□□□□ -2.21
HOXA1P49639 Y_RNA.370-201ENST00000365589 108 ntBASIC1.25□□□□□ -2.21
HOXA1P49639 MIR520C-201ENST00000385005 87 ntBASIC1.25□□□□□ -2.21
HOXA1P49639 RNU1-78P-201ENST00000391248 165 ntBASIC1.25□□□□□ -2.21
HOXA1P49639 RPS26P48-201ENST00000491713 339 ntBASIC1.25□□□□□ -2.21
HOXA1P49639 AL512310.8-201ENST00000550183 120 ntBASIC1.25□□□□□ -2.21
HOXA1P49639 CYP3A52P-201ENST00000563326 91 ntBASIC1.25□□□□□ -2.21
HOXA1P49639 DNAJC19P2-201ENST00000593340 302 ntBASIC1.25□□□□□ -2.21
HOXA1P49639 AL365205.2-201ENST00000594586 68 ntBASIC1.25□□□□□ -2.21
HOXA1P49639 AL513534.2-201ENST00000603836 250 ntBASIC1.25□□□□□ -2.21
HOXA1P49639 AC134878.1-201ENST00000619901 243 ntBASIC1.25□□□□□ -2.21
HOXA1P49639 MIR6844-201ENST00000637122 62 ntBASIC1.25□□□□□ -2.21
HOXA1P49639 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.24□□□□□ -2.21
HOXA1P49639 RNU6-508P-201ENST00000363231 103 ntBASIC1.24□□□□□ -2.21
HOXA1P49639 SNORA25.7-201ENST00000364375 127 ntBASIC1.24□□□□□ -2.21
HOXA1P49639 RNU6-597P-201ENST00000365620 102 ntBASIC1.24□□□□□ -2.21
HOXA1P49639 RNU6-1189P-201ENST00000383958 107 ntBASIC1.24□□□□□ -2.21
HOXA1P49639 SNORA20-201ENST00000384662 132 ntBASIC1.24□□□□□ -2.21
HOXA1P49639 MIR504-201ENST00000385065 83 ntBASIC1.24□□□□□ -2.21
HOXA1P49639 MIR1304-201ENST00000408243 91 ntBASIC1.24□□□□□ -2.21
HOXA1P49639 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.24□□□□□ -2.21
HOXA1P49639 RNA5SP445-201ENST00000515889 115 ntBASIC1.24□□□□□ -2.21
HOXA1P49639 MIR3664-201ENST00000579074 99 ntBASIC1.24□□□□□ -2.21
HOXA1P49639 GHRLOS.1-201ENST00000610995 70 ntBASIC1.24□□□□□ -2.21
HOXA1P49639 Y_RNA.778-201ENST00000620203 90 ntBASIC1.24□□□□□ -2.21
HOXA1P49639 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC1.24□□□□□ -2.21
HOXA1P49639 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
HOXA1P49639 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.23□□□□□ -2.21
HOXA1P49639 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
HOXA1P49639 Y_RNA.440-201ENST00000384120 114 ntBASIC1.23□□□□□ -2.21
HOXA1P49639 Y_RNA.464-201ENST00000384282 110 ntBASIC1.23□□□□□ -2.21
HOXA1P49639 SNORA67.5-201ENST00000391036 107 ntBASIC1.23□□□□□ -2.21
HOXA1P49639 AL627390.1-201ENST00000396055 340 ntBASIC1.23□□□□□ -2.21
HOXA1P49639 RNA5SP127-201ENST00000411051 133 ntBASIC1.23□□□□□ -2.21
HOXA1P49639 SNORA25.12-201ENST00000516202 82 ntBASIC1.23□□□□□ -2.21
HOXA1P49639 RNU6-548P-201ENST00000517083 115 ntBASIC1.23□□□□□ -2.21
HOXA1P49639 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.23□□□□□ -2.21
HOXA1P49639 MIR26B-201ENST00000362251 77 ntBASIC1.22□□□□□ -2.21
HOXA1P49639 Y_RNA.52-201ENST00000362760 96 ntBASIC1.22□□□□□ -2.21
HOXA1P49639 RNU6-1065P-201ENST00000384513 106 ntBASIC1.22□□□□□ -2.21
HOXA1P49639 Y_RNA.542-201ENST00000384641 111 ntBASIC1.22□□□□□ -2.21
HOXA1P49639 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.22□□□□□ -2.21
HOXA1P49639 Y_RNA.580-201ENST00000391004 95 ntBASIC1.22□□□□□ -2.21
HOXA1P49639 RNU6-460P-201ENST00000391158 108 ntBASIC1.22□□□□□ -2.21
HOXA1P49639 SNORA75.5-201ENST00000391291 81 ntBASIC1.22□□□□□ -2.21
HOXA1P49639 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.22□□□□□ -2.21
HOXA1P49639 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.22□□□□□ -2.21
HOXA1P49639 RNU7-200P-201ENST00000516105 62 ntBASIC1.22□□□□□ -2.21
HOXA1P49639 RNU6-1149P-201ENST00000516810 97 ntBASIC1.22□□□□□ -2.21
HOXA1P49639 RNU6-958P-201ENST00000516995 106 ntBASIC1.22□□□□□ -2.21
HOXA1P49639 AC112693.2-201ENST00000556538 232 ntBASIC1.22□□□□□ -2.21
HOXA1P49639 MIR4422-201ENST00000581938 83 ntBASIC1.22□□□□□ -2.21
HOXA1P49639 MIR5197-201ENST00000583721 112 ntBASIC1.22□□□□□ -2.21
HOXA1P49639 MIR4298-201ENST00000584380 73 ntBASIC1.22□□□□□ -2.21
HOXA1P49639 MIR4791-201ENST00000607666 84 ntBASIC1.22□□□□□ -2.21
HOXA1P49639 MIR6845-201ENST00000613182 61 ntBASIC1.22□□□□□ -2.21
HOXA1P49639 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.22□□□□□ -2.21
HOXA1P49639 AC008133.2-201ENST00000624540 351 ntBASIC1.22□□□□□ -2.21
HOXA1P49639 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.22□□□□□ -2.21
HOXA1P49639 SNORA27-201ENST00000384323 126 ntBASIC1.21□□□□□ -2.22
HOXA1P49639 Y_RNA.497-201ENST00000384447 98 ntBASIC1.21□□□□□ -2.22
HOXA1P49639 MIR517C-201ENST00000385103 95 ntBASIC1.21□□□□□ -2.22
HOXA1P49639 MIR624-201ENST00000385217 97 ntBASIC1.21□□□□□ -2.22
HOXA1P49639 MIR1261-201ENST00000408659 82 ntBASIC1.21□□□□□ -2.22
HOXA1P49639 AC087499.4-201ENST00000448505 178 ntBASIC1.21□□□□□ -2.22
HOXA1P49639 RNU7-45P-201ENST00000459460 63 ntBASIC1.21□□□□□ -2.22
HOXA1P49639 SNORA31.4-201ENST00000516049 129 ntBASIC1.21□□□□□ -2.22
HOXA1P49639 Y_RNA.686-201ENST00000516548 134 ntBASIC1.21□□□□□ -2.22
HOXA1P49639 RN7SKP88-201ENST00000516847 250 ntBASIC1.21□□□□□ -2.22
HOXA1P49639 SCARNA15-202ENST00000516881 127 ntBASIC1.21□□□□□ -2.22
HOXA1P49639 RNU6-902P-201ENST00000517212 91 ntBASIC1.21□□□□□ -2.22
HOXA1P49639 RNU2-60P-201ENST00000517290 128 ntBASIC1.21□□□□□ -2.22
HOXA1P49639 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC1.21□□□□□ -2.22
HOXA1P49639 SNORD53B-201ENST00000577887 78 ntBASIC1.21□□□□□ -2.22
HOXA1P49639 HSPE1P19-201ENST00000603327 295 ntBASIC1.21□□□□□ -2.22
HOXA1P49639 7SK.8-201ENST00000612110 250 ntBASIC1.21□□□□□ -2.22
HOXA1P49639 7SK.11-201ENST00000615477 250 ntBASIC1.21□□□□□ -2.22
HOXA1P49639 AC243994.1-201ENST00000618627 109 ntBASIC1.21□□□□□ -2.22
HOXA1P49639 7SK.13-201ENST00000622040 250 ntBASIC1.21□□□□□ -2.22
HOXA1P49639 MIR7843-201ENST00000622274 79 ntBASIC1.21□□□□□ -2.22
HOXA1P49639 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.21□□□□□ -2.22
HOXA1P49639 U8.1-201ENST00000362843 134 ntBASIC1.2□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 180.5 ms