Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 MIR7106-201ENST00000612419 65 ntBASIC2.89□□□□□ -1.95
MSX1P28360 AC243994.1-201ENST00000618627 109 ntBASIC2.89□□□□□ -1.95
MSX1P28360 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.89□□□□□ -1.95
MSX1P28360 AC006160.2-201ENST00000637708 154 ntBASIC2.89□□□□□ -1.95
MSX1P28360 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
MSX1P28360 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.89□□□□□ -1.95
MSX1P28360 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.88□□□□□ -1.95
MSX1P28360 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.88□□□□□ -1.95
MSX1P28360 Y_RNA.247-201ENST00000364500 92 ntBASIC2.88□□□□□ -1.95
MSX1P28360 SNORA7.4-201ENST00000384249 137 ntBASIC2.88□□□□□ -1.95
MSX1P28360 SNORD15B-201ENST00000384714 146 ntBASIC2.88□□□□□ -1.95
MSX1P28360 Y_RNA.611-201ENST00000410682 108 ntBASIC2.88□□□□□ -1.95
MSX1P28360 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC2.88□□□□□ -1.95
MSX1P28360 MIR548AR-201ENST00000582191 57 ntBASIC2.88□□□□□ -1.95
MSX1P28360 AC103810.7-201ENST00000607821 91 ntBASIC2.88□□□□□ -1.95
MSX1P28360 AC022202.1-201ENST00000613515 211 ntBASIC2.88□□□□□ -1.95
MSX1P28360 SNORD3E-202ENST00000627253 216 ntBASIC2.88□□□□□ -1.95
MSX1P28360 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
MSX1P28360 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
MSX1P28360 Y_RNA.4-201ENST00000362333 112 ntBASIC2.87□□□□□ -1.95
MSX1P28360 Y_RNA.140-201ENST00000363474 103 ntBASIC2.87□□□□□ -1.95
MSX1P28360 SNORA44-201ENST00000384584 132 ntBASIC2.87□□□□□ -1.95
MSX1P28360 BX510359.4-201ENST00000423750 193 ntBASIC2.87□□□□□ -1.95
MSX1P28360 UBL5P1-201ENST00000507979 193 ntBASIC2.87□□□□□ -1.95
MSX1P28360 RNU6-56P-201ENST00000516986 93 ntBASIC2.87□□□□□ -1.95
MSX1P28360 RNU6-86P-201ENST00000606534 107 ntBASIC2.87□□□□□ -1.95
MSX1P28360 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.87□□□□□ -1.95
MSX1P28360 MAPK10-266ENST00000641066 6555 ntBASIC2.86□□□□□ -1.95
MSX1P28360 SNORD56.3-201ENST00000363507 71 ntBASIC2.86□□□□□ -1.95
MSX1P28360 RNU6-509P-201ENST00000363519 107 ntBASIC2.86□□□□□ -1.95
MSX1P28360 SNORD38.1-201ENST00000363863 68 ntBASIC2.86□□□□□ -1.95
MSX1P28360 SNORD28B-201ENST00000390993 75 ntBASIC2.86□□□□□ -1.95
MSX1P28360 RNA5SP344-201ENST00000411081 104 ntBASIC2.86□□□□□ -1.95
MSX1P28360 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.86□□□□□ -1.95
MSX1P28360 AC093850.1-201ENST00000454121 251 ntBASIC2.86□□□□□ -1.95
MSX1P28360 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.86□□□□□ -1.95
MSX1P28360 RNU6-1006P-201ENST00000516998 103 ntBASIC2.86□□□□□ -1.95
MSX1P28360 MIR548BB-201ENST00000626714 66 ntBASIC2.86□□□□□ -1.95
MSX1P28360 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC2.86□□□□□ -1.95
MSX1P28360 MIR4662A-201ENST00000637499 67 ntBASIC2.86□□□□□ -1.95
MSX1P28360 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
MSX1P28360 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
MSX1P28360 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
MSX1P28360 SNORA5B-201ENST00000363786 132 ntBASIC2.85□□□□□ -1.95
MSX1P28360 Y_RNA.191-201ENST00000363972 113 ntBASIC2.85□□□□□ -1.95
MSX1P28360 RNU6-1163P-201ENST00000364516 107 ntBASIC2.85□□□□□ -1.95
MSX1P28360 AL445685.2-201ENST00000422551 342 ntBASIC2.85□□□□□ -1.95
MSX1P28360 RPS12P2-201ENST00000439728 269 ntBASIC2.85□□□□□ -1.95
MSX1P28360 SNORD123-201ENST00000459473 70 ntBASIC2.85□□□□□ -1.95
MSX1P28360 RNU1-143P-201ENST00000516296 146 ntBASIC2.85□□□□□ -1.95
MSX1P28360 SCARNA20.6-201ENST00000517251 106 ntBASIC2.85□□□□□ -1.95
MSX1P28360 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC2.85□□□□□ -1.95
MSX1P28360 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC2.85□□□□□ -1.95
MSX1P28360 U1.23-201ENST00000610293 146 ntBASIC2.85□□□□□ -1.95
MSX1P28360 RNU1-68P-201ENST00000615382 146 ntBASIC2.85□□□□□ -1.95
MSX1P28360 U1.39-201ENST00000621562 146 ntBASIC2.85□□□□□ -1.95
MSX1P28360 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
MSX1P28360 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC2.85□□□□□ -1.95
MSX1P28360 AP000648.3-201ENST00000623539 4507 ntBASIC2.84□□□□□ -1.95
MSX1P28360 RNU6ATAC41P-201ENST00000408600 126 ntBASIC2.84□□□□□ -1.95
MSX1P28360 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC2.84□□□□□ -1.95
MSX1P28360 AL137790.1-201ENST00000634283 177 ntBASIC2.84□□□□□ -1.95
MSX1P28360 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
MSX1P28360 RNU6-633P-201ENST00000362612 103 ntBASIC2.83□□□□□ -1.96
MSX1P28360 RNU6-652P-201ENST00000365488 107 ntBASIC2.83□□□□□ -1.96
MSX1P28360 RNU1-109P-201ENST00000383960 147 ntBASIC2.83□□□□□ -1.96
MSX1P28360 Y_RNA.537-201ENST00000384626 109 ntBASIC2.83□□□□□ -1.96
MSX1P28360 RNU6-1067P-201ENST00000384752 107 ntBASIC2.83□□□□□ -1.96
MSX1P28360 MIR206-201ENST00000384872 86 ntBASIC2.83□□□□□ -1.96
MSX1P28360 MIR627-201ENST00000384979 97 ntBASIC2.83□□□□□ -1.96
MSX1P28360 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC2.83□□□□□ -1.96
MSX1P28360 SCARNA16.3-201ENST00000516595 184 ntBASIC2.83□□□□□ -1.96
MSX1P28360 RNU6-826P-201ENST00000516827 104 ntBASIC2.83□□□□□ -1.96
MSX1P28360 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.83□□□□□ -1.96
MSX1P28360 AC006023.1-201ENST00000603944 259 ntBASIC2.83□□□□□ -1.96
MSX1P28360 AL033523.1-201ENST00000605153 153 ntBASIC2.83□□□□□ -1.96
MSX1P28360 RNU6-301P-201ENST00000384277 107 ntBASIC2.82□□□□□ -1.96
MSX1P28360 MIR597-201ENST00000384968 97 ntBASIC2.82□□□□□ -1.96
MSX1P28360 RNU11-3P-201ENST00000391111 133 ntBASIC2.82□□□□□ -1.96
MSX1P28360 RNA5SP274-201ENST00000410484 108 ntBASIC2.82□□□□□ -1.96
MSX1P28360 Y_RNA.607-201ENST00000410597 98 ntBASIC2.82□□□□□ -1.96
MSX1P28360 RN7SL429P-201ENST00000479090 223 ntBASIC2.82□□□□□ -1.96
MSX1P28360 RN7SL489P-201ENST00000486185 223 ntBASIC2.82□□□□□ -1.96
MSX1P28360 RN7SL327P-201ENST00000488659 223 ntBASIC2.82□□□□□ -1.96
MSX1P28360 RNU7-35P-201ENST00000517174 62 ntBASIC2.82□□□□□ -1.96
MSX1P28360 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.82□□□□□ -1.96
MSX1P28360 UBL5P2-201ENST00000583788 219 ntBASIC2.82□□□□□ -1.96
MSX1P28360 RN7SL853P-201ENST00000617250 223 ntBASIC2.82□□□□□ -1.96
MSX1P28360 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
MSX1P28360 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.82□□□□□ -1.96
MSX1P28360 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.82□□□□□ -1.96
MSX1P28360 RNU6-342P-201ENST00000384521 104 ntBASIC2.81□□□□□ -1.96
MSX1P28360 RNU6-1307P-201ENST00000391012 103 ntBASIC2.81□□□□□ -1.96
MSX1P28360 Y_RNA.609-201ENST00000410669 89 ntBASIC2.81□□□□□ -1.96
MSX1P28360 HMGN1P33-201ENST00000432945 451 ntBASIC2.81□□□□□ -1.96
MSX1P28360 AC245047.7-201ENST00000440265 293 ntBASIC2.81□□□□□ -1.96
MSX1P28360 AC104389.3-201ENST00000445629 235 ntBASIC2.81□□□□□ -1.96
MSX1P28360 RPS29P28-201ENST00000446439 141 ntBASIC2.81□□□□□ -1.96
MSX1P28360 snoU13.16-201ENST00000459350 104 ntBASIC2.81□□□□□ -1.96
MSX1P28360 RN7SL499P-201ENST00000481141 276 ntBASIC2.81□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 169.1 ms