Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC011753.1-201ENST00000451001 220 ntBASIC5.4□□□□□ -1.54
MSH5O43196 AL031183.1-201ENST00000457667 207 ntBASIC5.4□□□□□ -1.54
MSH5O43196 AL355297.2-201ENST00000604792 129 ntBASIC5.4□□□□□ -1.54
MSH5O43196 MIR486-1-201ENST00000612171 68 ntBASIC5.4□□□□□ -1.54
MSH5O43196 U4.4-201ENST00000620626 117 ntBASIC5.4□□□□□ -1.54
MSH5O43196 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
MSH5O43196 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
MSH5O43196 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
MSH5O43196 MIR561-201ENST00000385216 97 ntBASIC5.39□□□□□ -1.55
MSH5O43196 AC013244.2-201ENST00000603396 103 ntBASIC5.39□□□□□ -1.55
MSH5O43196 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
MSH5O43196 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
MSH5O43196 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
MSH5O43196 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC5.39□□□□□ -1.55
MSH5O43196 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
MSH5O43196 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
MSH5O43196 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
MSH5O43196 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC5.38□□□□□ -1.55
MSH5O43196 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
MSH5O43196 RNU6-698P-201ENST00000363523 107 ntBASIC5.38□□□□□ -1.55
MSH5O43196 RNU6-34P-201ENST00000364874 107 ntBASIC5.38□□□□□ -1.55
MSH5O43196 SNORA41B-201ENST00000384785 128 ntBASIC5.38□□□□□ -1.55
MSH5O43196 MIR517B-201ENST00000385102 67 ntBASIC5.38□□□□□ -1.55
MSH5O43196 AC097635.1-201ENST00000450678 155 ntBASIC5.38□□□□□ -1.55
MSH5O43196 AL157398.1-201ENST00000452981 186 ntBASIC5.38□□□□□ -1.55
MSH5O43196 RNU6-1265P-201ENST00000516342 103 ntBASIC5.38□□□□□ -1.55
MSH5O43196 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC5.38□□□□□ -1.55
MSH5O43196 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
MSH5O43196 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
MSH5O43196 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
MSH5O43196 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC5.37□□□□□ -1.55
MSH5O43196 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC5.37□□□□□ -1.55
MSH5O43196 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
MSH5O43196 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
MSH5O43196 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
MSH5O43196 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
MSH5O43196 RNU6-364P-201ENST00000384387 107 ntBASIC5.37□□□□□ -1.55
MSH5O43196 MIR3074-201ENST00000384885 81 ntBASIC5.37□□□□□ -1.55
MSH5O43196 SNORD66.1-201ENST00000391230 76 ntBASIC5.37□□□□□ -1.55
MSH5O43196 AL138878.1-201ENST00000405131 347 ntBASIC5.37□□□□□ -1.55
MSH5O43196 SNORA74C-2-201ENST00000411179 201 ntBASIC5.37□□□□□ -1.55
MSH5O43196 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC5.37□□□□□ -1.55
MSH5O43196 MICF-203ENST00000432679 129 ntBASIC5.37□□□□□ -1.55
MSH5O43196 RNA5SP73-201ENST00000516744 108 ntBASIC5.37□□□□□ -1.55
MSH5O43196 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC5.37□□□□□ -1.55
MSH5O43196 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC5.37□□□□□ -1.55
MSH5O43196 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
MSH5O43196 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
MSH5O43196 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
MSH5O43196 RNU6-287P-201ENST00000516230 98 ntBASIC5.36□□□□□ -1.55
MSH5O43196 SCARNA11.3-201ENST00000517276 130 ntBASIC5.36□□□□□ -1.55
MSH5O43196 AL513423.1-201ENST00000621695 132 ntBASIC5.36□□□□□ -1.55
MSH5O43196 MIR7157-201ENST00000635801 60 ntBASIC5.36□□□□□ -1.55
MSH5O43196 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSH5O43196 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSH5O43196 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSH5O43196 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
MSH5O43196 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSH5O43196 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
MSH5O43196 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
MSH5O43196 MIR34B-201ENST00000385076 84 ntBASIC5.35□□□□□ -1.55
MSH5O43196 SNORA57.3-201ENST00000411095 141 ntBASIC5.35□□□□□ -1.55
MSH5O43196 RPS29P19-201ENST00000479709 171 ntBASIC5.35□□□□□ -1.55
MSH5O43196 RNU7-41P-201ENST00000515917 61 ntBASIC5.35□□□□□ -1.55
MSH5O43196 PRELID3BP2-201ENST00000605362 201 ntBASIC5.35□□□□□ -1.55
MSH5O43196 MIR6739-201ENST00000622461 75 ntBASIC5.35□□□□□ -1.55
MSH5O43196 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC5.35□□□□□ -1.55
MSH5O43196 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
MSH5O43196 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
MSH5O43196 RNU6-403P-201ENST00000363163 104 ntBASIC5.34□□□□□ -1.55
MSH5O43196 MIR30B-201ENST00000384850 88 ntBASIC5.34□□□□□ -1.55
MSH5O43196 MIR599-201ENST00000385069 95 ntBASIC5.34□□□□□ -1.55
MSH5O43196 RHEBP3-201ENST00000411920 351 ntBASIC5.34□□□□□ -1.55
MSH5O43196 HMGN2P16-201ENST00000456802 261 ntBASIC5.34□□□□□ -1.55
MSH5O43196 SCARNA16.3-201ENST00000516595 184 ntBASIC5.34□□□□□ -1.55
MSH5O43196 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC5.34□□□□□ -1.55
MSH5O43196 SPATA31D2P-201ENST00000429999 4388 ntBASIC5.34□□□□□ -1.55
MSH5O43196 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
MSH5O43196 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
MSH5O43196 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC5.34□□□□□ -1.56
MSH5O43196 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
MSH5O43196 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
MSH5O43196 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
MSH5O43196 Y_RNA.56-201ENST00000362798 112 ntBASIC5.33□□□□□ -1.56
MSH5O43196 SNORA2.1-201ENST00000363089 137 ntBASIC5.33□□□□□ -1.56
MSH5O43196 NDUFB9P3-201ENST00000521269 501 ntBASIC5.33□□□□□ -1.56
MSH5O43196 AC021506.2-201ENST00000612354 169 ntBASIC5.33□□□□□ -1.56
MSH5O43196 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC5.33□□□□□ -1.56
MSH5O43196 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
MSH5O43196 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
MSH5O43196 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
MSH5O43196 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSH5O43196 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSH5O43196 RNU1-18P-201ENST00000363062 164 ntBASIC5.32□□□□□ -1.56
MSH5O43196 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC5.32□□□□□ -1.56
MSH5O43196 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC5.32□□□□□ -1.56
MSH5O43196 MIR4298-201ENST00000584380 73 ntBASIC5.32□□□□□ -1.56
MSH5O43196 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
MSH5O43196 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSH5O43196 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 242.8 ms