Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC3.28□□□□□ -1.88
COL17A1Q9UMD9 RNA5SP200-201ENST00000516360 103 ntBASIC3.28□□□□□ -1.88
COL17A1Q9UMD9 RNU6-1270P-201ENST00000517128 108 ntBASIC3.28□□□□□ -1.88
COL17A1Q9UMD9 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC3.28□□□□□ -1.88
COL17A1Q9UMD9 AC021443.1-201ENST00000604478 211 ntBASIC3.28□□□□□ -1.88
COL17A1Q9UMD9 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC3.28□□□□□ -1.88
COL17A1Q9UMD9 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
COL17A1Q9UMD9 AC091304.10-201ENST00000641554 121 ntBASIC3.28□□□□□ -1.88
COL17A1Q9UMD9 SNORA27.1-201ENST00000362604 124 ntBASIC3.27□□□□□ -1.89
COL17A1Q9UMD9 RNU6-832P-201ENST00000363319 107 ntBASIC3.27□□□□□ -1.89
COL17A1Q9UMD9 RNU6-234P-201ENST00000365229 104 ntBASIC3.27□□□□□ -1.89
COL17A1Q9UMD9 RNY1P6-201ENST00000384193 109 ntBASIC3.27□□□□□ -1.89
COL17A1Q9UMD9 Y_RNA.454-201ENST00000384224 113 ntBASIC3.27□□□□□ -1.89
COL17A1Q9UMD9 SNORD61-201ENST00000384252 73 ntBASIC3.27□□□□□ -1.89
COL17A1Q9UMD9 RNU6-616P-201ENST00000384353 107 ntBASIC3.27□□□□□ -1.89
COL17A1Q9UMD9 MIR577-201ENST00000385196 96 ntBASIC3.27□□□□□ -1.89
COL17A1Q9UMD9 Y_RNA.607-201ENST00000410597 98 ntBASIC3.27□□□□□ -1.89
COL17A1Q9UMD9 AC010598.1-201ENST00000510378 103 ntBASIC3.27□□□□□ -1.89
COL17A1Q9UMD9 RNU6-948P-201ENST00000516374 107 ntBASIC3.27□□□□□ -1.89
COL17A1Q9UMD9 RNA5SP480-201ENST00000516840 109 ntBASIC3.27□□□□□ -1.89
COL17A1Q9UMD9 RNU6-586P-201ENST00000517265 104 ntBASIC3.27□□□□□ -1.89
COL17A1Q9UMD9 AC027419.1-201ENST00000522976 328 ntBASIC3.27□□□□□ -1.89
COL17A1Q9UMD9 MIR3163-201ENST00000581592 73 ntBASIC3.27□□□□□ -1.89
COL17A1Q9UMD9 AC145423.2-201ENST00000610631 239 ntBASIC3.27□□□□□ -1.89
COL17A1Q9UMD9 RNU4-13P-201ENST00000364019 141 ntBASIC3.26□□□□□ -1.89
COL17A1Q9UMD9 RNU6-438P-201ENST00000365561 103 ntBASIC3.26□□□□□ -1.89
COL17A1Q9UMD9 MIR562-201ENST00000384894 95 ntBASIC3.26□□□□□ -1.89
COL17A1Q9UMD9 SNORD77.3-201ENST00000391113 65 ntBASIC3.26□□□□□ -1.89
COL17A1Q9UMD9 MIR1276-201ENST00000408707 83 ntBASIC3.26□□□□□ -1.89
COL17A1Q9UMD9 AC113410.1-201ENST00000505029 247 ntBASIC3.26□□□□□ -1.89
COL17A1Q9UMD9 RNU7-6P-201ENST00000516845 62 ntBASIC3.26□□□□□ -1.89
COL17A1Q9UMD9 SNORA31.26-201ENST00000517250 137 ntBASIC3.26□□□□□ -1.89
COL17A1Q9UMD9 SCARNA11.3-201ENST00000517276 130 ntBASIC3.26□□□□□ -1.89
COL17A1Q9UMD9 MIR4662B-201ENST00000579498 81 ntBASIC3.26□□□□□ -1.89
COL17A1Q9UMD9 MIR2681-201ENST00000581814 105 ntBASIC3.26□□□□□ -1.89
COL17A1Q9UMD9 MIR376A2-201ENST00000636782 80 ntBASIC3.26□□□□□ -1.89
COL17A1Q9UMD9 MIR6073-201ENST00000352083 89 ntBASIC3.25□□□□□ -1.89
COL17A1Q9UMD9 MIR21-201ENST00000362134 72 ntBASIC3.25□□□□□ -1.89
COL17A1Q9UMD9 RNU6-987P-201ENST00000384759 104 ntBASIC3.25□□□□□ -1.89
COL17A1Q9UMD9 U8.17-201ENST00000391292 132 ntBASIC3.25□□□□□ -1.89
COL17A1Q9UMD9 MIR7157-201ENST00000635801 60 ntBASIC3.25□□□□□ -1.89
COL17A1Q9UMD9 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC3.25□□□□□ -1.89
COL17A1Q9UMD9 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
COL17A1Q9UMD9 Y_RNA.224-201ENST00000364308 111 ntBASIC3.24□□□□□ -1.89
COL17A1Q9UMD9 SNORD31B-201ENST00000364977 69 ntBASIC3.24□□□□□ -1.89
COL17A1Q9UMD9 RNU6-975P-201ENST00000384296 105 ntBASIC3.24□□□□□ -1.89
COL17A1Q9UMD9 RNU4-37P-201ENST00000410214 84 ntBASIC3.24□□□□□ -1.89
COL17A1Q9UMD9 RNU4-69P-201ENST00000410677 143 ntBASIC3.24□□□□□ -1.89
COL17A1Q9UMD9 AC009238.1-201ENST00000442165 424 ntBASIC3.24□□□□□ -1.89
COL17A1Q9UMD9 AC009237.6-201ENST00000446969 424 ntBASIC3.24□□□□□ -1.89
COL17A1Q9UMD9 RNU7-164P-201ENST00000459221 62 ntBASIC3.24□□□□□ -1.89
COL17A1Q9UMD9 RNU6-221P-201ENST00000459541 99 ntBASIC3.24□□□□□ -1.89
COL17A1Q9UMD9 AC004223.1-201ENST00000479840 271 ntBASIC3.24□□□□□ -1.89
COL17A1Q9UMD9 RNU7-123P-201ENST00000515911 60 ntBASIC3.24□□□□□ -1.89
COL17A1Q9UMD9 RNU6ATAC9P-201ENST00000516210 116 ntBASIC3.24□□□□□ -1.89
COL17A1Q9UMD9 RNU6-126P-201ENST00000516685 103 ntBASIC3.24□□□□□ -1.89
COL17A1Q9UMD9 RNU6-1006P-201ENST00000516998 103 ntBASIC3.24□□□□□ -1.89
COL17A1Q9UMD9 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.24□□□□□ -1.89
COL17A1Q9UMD9 MIR4712-201ENST00000583750 82 ntBASIC3.24□□□□□ -1.89
COL17A1Q9UMD9 RNU6-349P-201ENST00000362402 107 ntBASIC3.23□□□□□ -1.89
COL17A1Q9UMD9 RNU6-509P-201ENST00000363519 107 ntBASIC3.23□□□□□ -1.89
COL17A1Q9UMD9 Y_RNA.545-201ENST00000384652 105 ntBASIC3.23□□□□□ -1.89
COL17A1Q9UMD9 AC007536.1-201ENST00000533382 349 ntBASIC3.23□□□□□ -1.89
COL17A1Q9UMD9 MIR4694-201ENST00000578534 80 ntBASIC3.23□□□□□ -1.89
COL17A1Q9UMD9 AC006435.5-201ENST00000624486 112 ntBASIC3.23□□□□□ -1.89
COL17A1Q9UMD9 AC110079.1-202ENST00000635213 138 ntBASIC3.23□□□□□ -1.89
COL17A1Q9UMD9 AGL-204ENST00000370161 6923 ntTSL 5 BASIC3.23□□□□□ -1.89
COL17A1Q9UMD9 Y_RNA.155-201ENST00000363632 101 ntBASIC3.22□□□□□ -1.89
COL17A1Q9UMD9 Y_RNA.360-201ENST00000365512 102 ntBASIC3.22□□□□□ -1.89
COL17A1Q9UMD9 Y_RNA.467-201ENST00000384297 102 ntBASIC3.22□□□□□ -1.89
COL17A1Q9UMD9 MIR605-201ENST00000385078 83 ntBASIC3.22□□□□□ -1.89
COL17A1Q9UMD9 RNU6-57P-201ENST00000411348 103 ntBASIC3.22□□□□□ -1.89
COL17A1Q9UMD9 AC245102.2-201ENST00000448956 180 ntBASIC3.22□□□□□ -1.89
COL17A1Q9UMD9 SNORD65B-201ENST00000459126 73 ntBASIC3.22□□□□□ -1.89
COL17A1Q9UMD9 AC125388.1-201ENST00000459631 156 ntBASIC3.22□□□□□ -1.89
COL17A1Q9UMD9 NDUFA4P2-201ENST00000489989 244 ntBASIC3.22□□□□□ -1.89
COL17A1Q9UMD9 RNA5SP20-201ENST00000515976 84 ntBASIC3.22□□□□□ -1.89
COL17A1Q9UMD9 MIR3683-201ENST00000580847 82 ntBASIC3.22□□□□□ -1.89
COL17A1Q9UMD9 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
COL17A1Q9UMD9 RNA5SP190-201ENST00000365222 118 ntBASIC3.22□□□□□ -1.89
COL17A1Q9UMD9 SNORD14D-201ENST00000384390 87 ntBASIC3.22□□□□□ -1.89
COL17A1Q9UMD9 SNORA18-201ENST00000384416 132 ntBASIC3.22□□□□□ -1.89
COL17A1Q9UMD9 Y_RNA.507-201ENST00000384500 99 ntBASIC3.22□□□□□ -1.89
COL17A1Q9UMD9 RNU6-887P-201ENST00000410660 100 ntBASIC3.22□□□□□ -1.89
COL17A1Q9UMD9 TRBV25OR9-2-201ENST00000438417 374 ntBASIC3.22□□□□□ -1.89
COL17A1Q9UMD9 MIR449C-201ENST00000516047 92 ntBASIC3.22□□□□□ -1.89
COL17A1Q9UMD9 RNU2-34P-201ENST00000516534 121 ntBASIC3.22□□□□□ -1.89
COL17A1Q9UMD9 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
COL17A1Q9UMD9 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
COL17A1Q9UMD9 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC3.21□□□□□ -1.9
COL17A1Q9UMD9 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.21□□□□□ -1.9
COL17A1Q9UMD9 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.21□□□□□ -1.9
COL17A1Q9UMD9 Y_RNA.340-201ENST00000365330 92 ntBASIC3.21□□□□□ -1.9
COL17A1Q9UMD9 RNU6-1274P-201ENST00000384557 107 ntBASIC3.21□□□□□ -1.9
COL17A1Q9UMD9 SNORA40.18-201ENST00000391200 128 ntBASIC3.21□□□□□ -1.9
COL17A1Q9UMD9 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC3.21□□□□□ -1.9
COL17A1Q9UMD9 Y_RNA.666-201ENST00000516187 112 ntBASIC3.21□□□□□ -1.9
COL17A1Q9UMD9 Y_RNA.705-201ENST00000516862 110 ntBASIC3.21□□□□□ -1.9
COL17A1Q9UMD9 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.21□□□□□ -1.9
COL17A1Q9UMD9 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms