Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
LIMD1Q9UGP4 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
LIMD1Q9UGP4 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
LIMD1Q9UGP4 RNU6-832P-201ENST00000363319 107 ntBASIC3.22□□□□□ -1.89
LIMD1Q9UGP4 SNORD56.3-201ENST00000363507 71 ntBASIC3.22□□□□□ -1.89
LIMD1Q9UGP4 Y_RNA.342-201ENST00000365352 113 ntBASIC3.22□□□□□ -1.89
LIMD1Q9UGP4 RNU6-820P-201ENST00000384273 107 ntBASIC3.22□□□□□ -1.89
LIMD1Q9UGP4 RNY1P7-201ENST00000384743 110 ntBASIC3.22□□□□□ -1.89
LIMD1Q9UGP4 MIR450A2-201ENST00000385022 100 ntBASIC3.22□□□□□ -1.89
LIMD1Q9UGP4 MIR660-201ENST00000385235 97 ntBASIC3.22□□□□□ -1.89
LIMD1Q9UGP4 HMGN2P39-201ENST00000398005 273 ntBASIC3.22□□□□□ -1.89
LIMD1Q9UGP4 AC096949.1-201ENST00000412047 152 ntBASIC3.22□□□□□ -1.89
LIMD1Q9UGP4 AL139132.1-201ENST00000431587 344 ntBASIC3.22□□□□□ -1.89
LIMD1Q9UGP4 snoU13.27-201ENST00000459278 104 ntBASIC3.22□□□□□ -1.89
LIMD1Q9UGP4 MIR1255B1-201ENST00000636325 63 ntBASIC3.22□□□□□ -1.89
LIMD1Q9UGP4 MIR6841-201ENST00000637129 72 ntBASIC3.22□□□□□ -1.89
LIMD1Q9UGP4 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.22□□□□□ -1.89
LIMD1Q9UGP4 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
LIMD1Q9UGP4 MIR22-201ENST00000362190 85 ntBASIC3.21□□□□□ -1.9
LIMD1Q9UGP4 RNU4-82P-201ENST00000362443 140 ntBASIC3.21□□□□□ -1.9
LIMD1Q9UGP4 RNA5SP293-201ENST00000410527 113 ntBASIC3.21□□□□□ -1.9
LIMD1Q9UGP4 RNA5SP229-201ENST00000410809 99 ntBASIC3.21□□□□□ -1.9
LIMD1Q9UGP4 AC108938.1-201ENST00000451204 136 ntBASIC3.21□□□□□ -1.9
LIMD1Q9UGP4 RPS27P29-201ENST00000463110 252 ntBASIC3.21□□□□□ -1.9
LIMD1Q9UGP4 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC3.21□□□□□ -1.9
LIMD1Q9UGP4 RNA5SP33-201ENST00000516687 98 ntBASIC3.21□□□□□ -1.9
LIMD1Q9UGP4 snoMBII-202.2-201ENST00000517263 86 ntBASIC3.21□□□□□ -1.9
LIMD1Q9UGP4 MIR4319-201ENST00000577285 85 ntBASIC3.21□□□□□ -1.9
LIMD1Q9UGP4 Y_RNA.773-201ENST00000607168 90 ntBASIC3.21□□□□□ -1.9
LIMD1Q9UGP4 AC021506.2-201ENST00000612354 169 ntBASIC3.21□□□□□ -1.9
LIMD1Q9UGP4 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
LIMD1Q9UGP4 RNU6-112P-201ENST00000363599 104 ntBASIC3.2□□□□□ -1.9
LIMD1Q9UGP4 Y_RNA.171-201ENST00000363760 102 ntBASIC3.2□□□□□ -1.9
LIMD1Q9UGP4 Y_RNA.388-201ENST00000383919 113 ntBASIC3.2□□□□□ -1.9
LIMD1Q9UGP4 MIR1261-201ENST00000408659 82 ntBASIC3.2□□□□□ -1.9
LIMD1Q9UGP4 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.2□□□□□ -1.9
LIMD1Q9UGP4 RNU7-45P-201ENST00000459460 63 ntBASIC3.2□□□□□ -1.9
LIMD1Q9UGP4 SNORD123-201ENST00000459473 70 ntBASIC3.2□□□□□ -1.9
LIMD1Q9UGP4 RNU6-1018P-201ENST00000516577 106 ntBASIC3.2□□□□□ -1.9
LIMD1Q9UGP4 AL513534.2-201ENST00000603836 250 ntBASIC3.2□□□□□ -1.9
LIMD1Q9UGP4 AC243994.1-201ENST00000618627 109 ntBASIC3.2□□□□□ -1.9
LIMD1Q9UGP4 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
LIMD1Q9UGP4 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
LIMD1Q9UGP4 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.19□□□□□ -1.9
LIMD1Q9UGP4 SNORA18-201ENST00000384416 132 ntBASIC3.19□□□□□ -1.9
LIMD1Q9UGP4 Y_RNA.537-201ENST00000384626 109 ntBASIC3.19□□□□□ -1.9
LIMD1Q9UGP4 MIR577-201ENST00000385196 96 ntBASIC3.19□□□□□ -1.9
LIMD1Q9UGP4 SNORD67-201ENST00000390833 111 ntBASIC3.19□□□□□ -1.9
LIMD1Q9UGP4 RNA5SP184-201ENST00000411071 108 ntBASIC3.19□□□□□ -1.9
LIMD1Q9UGP4 AC105272.1-201ENST00000438604 198 ntBASIC3.19□□□□□ -1.9
LIMD1Q9UGP4 RNU6-56P-201ENST00000516986 93 ntBASIC3.19□□□□□ -1.9
LIMD1Q9UGP4 RNA5SP437-201ENST00000517249 129 ntBASIC3.19□□□□□ -1.9
LIMD1Q9UGP4 MIR3186-201ENST00000577404 85 ntBASIC3.19□□□□□ -1.9
LIMD1Q9UGP4 MIR4435-1-201ENST00000582552 80 ntBASIC3.19□□□□□ -1.9
LIMD1Q9UGP4 MIR6717-201ENST00000622747 73 ntBASIC3.19□□□□□ -1.9
LIMD1Q9UGP4 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
LIMD1Q9UGP4 RNU6-296P-201ENST00000384608 107 ntBASIC3.18□□□□□ -1.9
LIMD1Q9UGP4 CST9LP2-201ENST00000437612 320 ntBASIC3.18□□□□□ -1.9
LIMD1Q9UGP4 AC093850.1-201ENST00000454121 251 ntBASIC3.18□□□□□ -1.9
LIMD1Q9UGP4 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC3.18□□□□□ -1.9
LIMD1Q9UGP4 SNORD3E-202ENST00000627253 216 ntBASIC3.18□□□□□ -1.9
LIMD1Q9UGP4 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
LIMD1Q9UGP4 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
LIMD1Q9UGP4 SNORD45B-201ENST00000364617 72 ntBASIC3.17□□□□□ -1.9
LIMD1Q9UGP4 Y_RNA.377-201ENST00000365644 108 ntBASIC3.17□□□□□ -1.9
LIMD1Q9UGP4 SNORA26.6-201ENST00000391256 115 ntBASIC3.17□□□□□ -1.9
LIMD1Q9UGP4 AC004941.2-201ENST00000427009 228 ntBASIC3.17□□□□□ -1.9
LIMD1Q9UGP4 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC3.17□□□□□ -1.9
LIMD1Q9UGP4 AC026421.1-201ENST00000519101 163 ntBASIC3.17□□□□□ -1.9
LIMD1Q9UGP4 MIR548AR-201ENST00000582191 57 ntBASIC3.17□□□□□ -1.9
LIMD1Q9UGP4 MIR548AE2-201ENST00000583456 67 ntBASIC3.17□□□□□ -1.9
LIMD1Q9UGP4 AL020996.3-201ENST00000606617 222 ntBASIC3.17□□□□□ -1.9
LIMD1Q9UGP4 AC103810.6-201ENST00000606708 136 ntBASIC3.17□□□□□ -1.9
LIMD1Q9UGP4 MIR4791-201ENST00000607666 84 ntBASIC3.17□□□□□ -1.9
LIMD1Q9UGP4 AC073476.4-201ENST00000628409 72 ntBASIC3.17□□□□□ -1.9
LIMD1Q9UGP4 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
LIMD1Q9UGP4 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
LIMD1Q9UGP4 MIR424-201ENST00000362227 98 ntBASIC3.16□□□□□ -1.9
LIMD1Q9UGP4 MIR148B-201ENST00000362252 99 ntBASIC3.16□□□□□ -1.9
LIMD1Q9UGP4 RNU6-1134P-201ENST00000365156 101 ntBASIC3.16□□□□□ -1.9
LIMD1Q9UGP4 RNA5SP501-201ENST00000410990 112 ntBASIC3.16□□□□□ -1.9
LIMD1Q9UGP4 RNA5SP270-201ENST00000411361 118 ntBASIC3.16□□□□□ -1.9
LIMD1Q9UGP4 RN7SKP12-201ENST00000516275 143 ntBASIC3.16□□□□□ -1.9
LIMD1Q9UGP4 RNU6-1258P-201ENST00000516911 111 ntBASIC3.16□□□□□ -1.9
LIMD1Q9UGP4 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.16□□□□□ -1.9
LIMD1Q9UGP4 AC062037.1-201ENST00000605302 128 ntBASIC3.16□□□□□ -1.9
LIMD1Q9UGP4 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.16□□□□□ -1.9
LIMD1Q9UGP4 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
LIMD1Q9UGP4 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
LIMD1Q9UGP4 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.9
LIMD1Q9UGP4 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.15□□□□□ -1.9
LIMD1Q9UGP4 AC062016.1-201ENST00000355719 319 ntBASIC3.15□□□□□ -1.91
LIMD1Q9UGP4 RNA5SP508-201ENST00000411327 119 ntBASIC3.15□□□□□ -1.91
LIMD1Q9UGP4 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.15□□□□□ -1.91
LIMD1Q9UGP4 snoU13.16-201ENST00000459350 104 ntBASIC3.15□□□□□ -1.91
LIMD1Q9UGP4 AL590808.1-201ENST00000618696 141 ntBASIC3.15□□□□□ -1.91
LIMD1Q9UGP4 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
LIMD1Q9UGP4 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC3.14□□□□□ -1.91
LIMD1Q9UGP4 RNU6-170P-201ENST00000362832 104 ntBASIC3.14□□□□□ -1.91
LIMD1Q9UGP4 Y_RNA.470-201ENST00000384307 117 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms