Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 SNORA27-201ENST00000384323 126 ntBASIC3.21□□□□□ -1.9
TRERF1Q96PN7 AL138827.1-201ENST00000402666 306 ntBASIC3.21□□□□□ -1.9
TRERF1Q96PN7 RNU4-69P-201ENST00000410677 143 ntBASIC3.21□□□□□ -1.9
TRERF1Q96PN7 RNU2-40P-201ENST00000410833 196 ntBASIC3.21□□□□□ -1.9
TRERF1Q96PN7 AC104332.2-201ENST00000429959 156 ntBASIC3.21□□□□□ -1.9
TRERF1Q96PN7 AL035398.1-201ENST00000430869 322 ntBASIC3.21□□□□□ -1.9
TRERF1Q96PN7 AL163195.1-201ENST00000496941 348 ntBASIC3.21□□□□□ -1.9
TRERF1Q96PN7 RNU6-998P-201ENST00000515894 101 ntBASIC3.21□□□□□ -1.9
TRERF1Q96PN7 MIR548BB-201ENST00000626714 66 ntBASIC3.21□□□□□ -1.9
TRERF1Q96PN7 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
TRERF1Q96PN7 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
TRERF1Q96PN7 RNU6-461P-201ENST00000364195 107 ntBASIC3.2□□□□□ -1.9
TRERF1Q96PN7 MIR512-1-201ENST00000384913 84 ntBASIC3.2□□□□□ -1.9
TRERF1Q96PN7 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC3.2□□□□□ -1.9
TRERF1Q96PN7 AC069257.2-201ENST00000441819 155 ntBASIC3.2□□□□□ -1.9
TRERF1Q96PN7 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC3.2□□□□□ -1.9
TRERF1Q96PN7 AL353149.1-201ENST00000610667 244 ntBASIC3.2□□□□□ -1.9
TRERF1Q96PN7 MIR5739-201ENST00000619803 80 ntBASIC3.2□□□□□ -1.9
TRERF1Q96PN7 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.2□□□□□ -1.9
TRERF1Q96PN7 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.19□□□□□ -1.9
TRERF1Q96PN7 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
TRERF1Q96PN7 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
TRERF1Q96PN7 Y_RNA.96-201ENST00000363092 109 ntBASIC3.19□□□□□ -1.9
TRERF1Q96PN7 SNORD114-6-201ENST00000364393 72 ntBASIC3.19□□□□□ -1.9
TRERF1Q96PN7 Y_RNA.241-201ENST00000364470 117 ntBASIC3.19□□□□□ -1.9
TRERF1Q96PN7 MIR592-201ENST00000384959 97 ntBASIC3.19□□□□□ -1.9
TRERF1Q96PN7 SNORD88.1-201ENST00000408684 91 ntBASIC3.19□□□□□ -1.9
TRERF1Q96PN7 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.19□□□□□ -1.9
TRERF1Q96PN7 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.19□□□□□ -1.9
TRERF1Q96PN7 AL606517.2-201ENST00000442855 241 ntBASIC3.19□□□□□ -1.9
TRERF1Q96PN7 RNU6-1116P-201ENST00000517269 99 ntBASIC3.19□□□□□ -1.9
TRERF1Q96PN7 AL355297.2-201ENST00000604792 129 ntBASIC3.19□□□□□ -1.9
TRERF1Q96PN7 CTSLP2-204ENST00000629029 392 ntBASIC3.19□□□□□ -1.9
TRERF1Q96PN7 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
TRERF1Q96PN7 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.19□□□□□ -1.9
TRERF1Q96PN7 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
TRERF1Q96PN7 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
TRERF1Q96PN7 Y_RNA.470-201ENST00000384307 117 ntBASIC3.18□□□□□ -1.9
TRERF1Q96PN7 MIR196B-201ENST00000384852 84 ntBASIC3.18□□□□□ -1.9
TRERF1Q96PN7 MIR9-1-201ENST00000385198 89 ntBASIC3.18□□□□□ -1.9
TRERF1Q96PN7 AC018868.1-201ENST00000491307 315 ntBASIC3.18□□□□□ -1.9
TRERF1Q96PN7 RNU6-667P-201ENST00000517186 102 ntBASIC3.18□□□□□ -1.9
TRERF1Q96PN7 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.18□□□□□ -1.9
TRERF1Q96PN7 MIR548AE2-201ENST00000583456 67 ntBASIC3.18□□□□□ -1.9
TRERF1Q96PN7 AC103810.6-201ENST00000606708 136 ntBASIC3.18□□□□□ -1.9
TRERF1Q96PN7 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.18□□□□□ -1.9
TRERF1Q96PN7 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
TRERF1Q96PN7 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
TRERF1Q96PN7 MAPK10-266ENST00000641066 6555 ntBASIC3.18□□□□□ -1.9
TRERF1Q96PN7 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
TRERF1Q96PN7 SNORD58A-201ENST00000383875 65 ntBASIC3.17□□□□□ -1.9
TRERF1Q96PN7 MIR95-201ENST00000385072 81 ntBASIC3.17□□□□□ -1.9
TRERF1Q96PN7 U8.15-201ENST00000390947 134 ntBASIC3.17□□□□□ -1.9
TRERF1Q96PN7 RNU6-788P-201ENST00000390967 104 ntBASIC3.17□□□□□ -1.9
TRERF1Q96PN7 RNU2-63P-201ENST00000410792 194 ntBASIC3.17□□□□□ -1.9
TRERF1Q96PN7 RNA5SP21-201ENST00000410917 96 ntBASIC3.17□□□□□ -1.9
TRERF1Q96PN7 RNU7-113P-201ENST00000459273 62 ntBASIC3.17□□□□□ -1.9
TRERF1Q96PN7 AC090821.2-201ENST00000523552 176 ntBASIC3.17□□□□□ -1.9
TRERF1Q96PN7 Y_RNA.94-201ENST00000363068 106 ntBASIC3.16□□□□□ -1.9
TRERF1Q96PN7 RNU6-509P-201ENST00000363519 107 ntBASIC3.16□□□□□ -1.9
TRERF1Q96PN7 SNORA25.6-201ENST00000364121 118 ntBASIC3.16□□□□□ -1.9
TRERF1Q96PN7 Y_RNA.247-201ENST00000364500 92 ntBASIC3.16□□□□□ -1.9
TRERF1Q96PN7 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC3.16□□□□□ -1.9
TRERF1Q96PN7 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC3.16□□□□□ -1.9
TRERF1Q96PN7 RNU7-96P-201ENST00000459535 64 ntBASIC3.16□□□□□ -1.9
TRERF1Q96PN7 RNU7-94P-201ENST00000459576 63 ntBASIC3.16□□□□□ -1.9
TRERF1Q96PN7 AC114811.1-201ENST00000507207 168 ntBASIC3.16□□□□□ -1.9
TRERF1Q96PN7 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.16□□□□□ -1.9
TRERF1Q96PN7 ZNF861P-201ENST00000588126 639 ntBASIC3.16□□□□□ -1.9
TRERF1Q96PN7 MIR376B-201ENST00000614515 100 ntBASIC3.16□□□□□ -1.9
TRERF1Q96PN7 AC080100.1-201ENST00000624239 5356 ntBASIC3.15□□□□□ -1.9
TRERF1Q96PN7 RNU6-859P-201ENST00000362728 107 ntBASIC3.15□□□□□ -1.91
TRERF1Q96PN7 SNORD116-10-201ENST00000363791 102 ntBASIC3.15□□□□□ -1.91
TRERF1Q96PN7 Y_RNA.299-201ENST00000364973 94 ntBASIC3.15□□□□□ -1.91
TRERF1Q96PN7 Y_RNA.316-201ENST00000365118 111 ntBASIC3.15□□□□□ -1.91
TRERF1Q96PN7 RNA5SP492-201ENST00000411330 114 ntBASIC3.15□□□□□ -1.91
TRERF1Q96PN7 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.15□□□□□ -1.91
TRERF1Q96PN7 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.91
TRERF1Q96PN7 AL512310.12-203ENST00000640543 90 ntBASIC3.15□□□□□ -1.91
TRERF1Q96PN7 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.15□□□□□ -1.91
TRERF1Q96PN7 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.15□□□□□ -1.91
TRERF1Q96PN7 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
TRERF1Q96PN7 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.14□□□□□ -1.91
TRERF1Q96PN7 RNU6-1313P-201ENST00000362622 102 ntBASIC3.14□□□□□ -1.91
TRERF1Q96PN7 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC3.14□□□□□ -1.91
TRERF1Q96PN7 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.14□□□□□ -1.91
TRERF1Q96PN7 ATP5J2P3-201ENST00000451550 258 ntBASIC3.14□□□□□ -1.91
TRERF1Q96PN7 SNORA48.11-201ENST00000517015 89 ntBASIC3.14□□□□□ -1.91
TRERF1Q96PN7 RNU7-181P-201ENST00000517234 74 ntBASIC3.14□□□□□ -1.91
TRERF1Q96PN7 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.14□□□□□ -1.91
TRERF1Q96PN7 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
TRERF1Q96PN7 AC245060.5-201ENST00000610778 3293 ntBASIC3.13□□□□□ -1.91
TRERF1Q96PN7 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
TRERF1Q96PN7 RNA5SP126-201ENST00000365092 109 ntBASIC3.13□□□□□ -1.91
TRERF1Q96PN7 RPS29P6-201ENST00000438196 145 ntBASIC3.13□□□□□ -1.91
TRERF1Q96PN7 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC3.13□□□□□ -1.91
TRERF1Q96PN7 IGHVIII-5-1-201ENST00000523059 99 ntBASIC3.13□□□□□ -1.91
TRERF1Q96PN7 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC3.13□□□□□ -1.91
TRERF1Q96PN7 AC103810.7-201ENST00000607821 91 ntBASIC3.13□□□□□ -1.91
TRERF1Q96PN7 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms