Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 SNORD115-41-201ENST00000363608 82 ntBASIC3.37□□□□□ -1.87
SH3RF1Q7Z6J0 SNORD115-11-201ENST00000363616 82 ntBASIC3.37□□□□□ -1.87
SH3RF1Q7Z6J0 SNORD115-5-201ENST00000363633 82 ntBASIC3.37□□□□□ -1.87
SH3RF1Q7Z6J0 SNORD115-39-201ENST00000363694 82 ntBASIC3.37□□□□□ -1.87
SH3RF1Q7Z6J0 SNORD115-4-201ENST00000363810 82 ntBASIC3.37□□□□□ -1.87
SH3RF1Q7Z6J0 SNORD115-6-201ENST00000363942 82 ntBASIC3.37□□□□□ -1.87
SH3RF1Q7Z6J0 SNORD115-42-201ENST00000364273 82 ntBASIC3.37□□□□□ -1.87
SH3RF1Q7Z6J0 SNORD115-15-201ENST00000364809 81 ntBASIC3.37□□□□□ -1.87
SH3RF1Q7Z6J0 SNORD115-26-201ENST00000365067 82 ntBASIC3.37□□□□□ -1.87
SH3RF1Q7Z6J0 SNORD115-10-201ENST00000365073 81 ntBASIC3.37□□□□□ -1.87
SH3RF1Q7Z6J0 SNORD115-43-201ENST00000365503 82 ntBASIC3.37□□□□□ -1.87
SH3RF1Q7Z6J0 SNORD115-36-201ENST00000365629 82 ntBASIC3.37□□□□□ -1.87
SH3RF1Q7Z6J0 SNORD58A-201ENST00000383875 65 ntBASIC3.37□□□□□ -1.87
SH3RF1Q7Z6J0 RNU6-220P-201ENST00000390919 107 ntBASIC3.37□□□□□ -1.87
SH3RF1Q7Z6J0 SNORD77B-201ENST00000391112 67 ntBASIC3.37□□□□□ -1.87
SH3RF1Q7Z6J0 RNA5SP274-201ENST00000410484 108 ntBASIC3.37□□□□□ -1.87
SH3RF1Q7Z6J0 IGLV3-17-201ENST00000519099 244 ntBASIC3.37□□□□□ -1.87
SH3RF1Q7Z6J0 AC090821.2-201ENST00000523552 176 ntBASIC3.37□□□□□ -1.87
SH3RF1Q7Z6J0 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.37□□□□□ -1.87
SH3RF1Q7Z6J0 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC3.37□□□□□ -1.87
SH3RF1Q7Z6J0 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
SH3RF1Q7Z6J0 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
SH3RF1Q7Z6J0 RNU6-23P-201ENST00000363283 107 ntBASIC3.36□□□□□ -1.87
SH3RF1Q7Z6J0 Y_RNA.191-201ENST00000363972 113 ntBASIC3.36□□□□□ -1.87
SH3RF1Q7Z6J0 RNU6-1229P-201ENST00000364295 107 ntBASIC3.36□□□□□ -1.87
SH3RF1Q7Z6J0 Y_RNA.430-201ENST00000384081 110 ntBASIC3.36□□□□□ -1.87
SH3RF1Q7Z6J0 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
SH3RF1Q7Z6J0 MIR1267-201ENST00000408723 78 ntBASIC3.36□□□□□ -1.87
SH3RF1Q7Z6J0 RNU4-69P-201ENST00000410677 143 ntBASIC3.36□□□□□ -1.87
SH3RF1Q7Z6J0 RNU7-113P-201ENST00000459273 62 ntBASIC3.36□□□□□ -1.87
SH3RF1Q7Z6J0 AP004217.1-201ENST00000480579 346 ntBASIC3.36□□□□□ -1.87
SH3RF1Q7Z6J0 MIR4439-201ENST00000583746 80 ntBASIC3.36□□□□□ -1.87
SH3RF1Q7Z6J0 MIR3616-201ENST00000584070 92 ntBASIC3.36□□□□□ -1.87
SH3RF1Q7Z6J0 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC3.36□□□□□ -1.87
SH3RF1Q7Z6J0 AC027279.3-201ENST00000625055 122 ntBASIC3.36□□□□□ -1.87
SH3RF1Q7Z6J0 RNU6-633P-201ENST00000362612 103 ntBASIC3.35□□□□□ -1.87
SH3RF1Q7Z6J0 RNA5SP493-201ENST00000364115 91 ntBASIC3.35□□□□□ -1.87
SH3RF1Q7Z6J0 RNA5SP109-201ENST00000391010 116 ntBASIC3.35□□□□□ -1.87
SH3RF1Q7Z6J0 SNORA7.5-201ENST00000410672 110 ntBASIC3.35□□□□□ -1.87
SH3RF1Q7Z6J0 AL606517.2-201ENST00000442855 241 ntBASIC3.35□□□□□ -1.87
SH3RF1Q7Z6J0 RPL23AP63-201ENST00000498752 471 ntBASIC3.35□□□□□ -1.87
SH3RF1Q7Z6J0 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.34□□□□□ -1.87
SH3RF1Q7Z6J0 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.34□□□□□ -1.87
SH3RF1Q7Z6J0 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
SH3RF1Q7Z6J0 Y_RNA.565-201ENST00000384719 101 ntBASIC3.34□□□□□ -1.87
SH3RF1Q7Z6J0 MIR1262-201ENST00000408276 93 ntBASIC3.34□□□□□ -1.87
SH3RF1Q7Z6J0 UBL5P3-201ENST00000475112 231 ntBASIC3.34□□□□□ -1.87
SH3RF1Q7Z6J0 SNORA31.4-201ENST00000516049 129 ntBASIC3.34□□□□□ -1.87
SH3RF1Q7Z6J0 MIR3152-201ENST00000579801 74 ntBASIC3.34□□□□□ -1.87
SH3RF1Q7Z6J0 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.88
SH3RF1Q7Z6J0 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SH3RF1Q7Z6J0 U8.15-201ENST00000390947 134 ntBASIC3.33□□□□□ -1.88
SH3RF1Q7Z6J0 RNA5SP508-201ENST00000411327 119 ntBASIC3.33□□□□□ -1.88
SH3RF1Q7Z6J0 AC015922.2-201ENST00000435593 184 ntBASIC3.33□□□□□ -1.88
SH3RF1Q7Z6J0 RNU1-41P-201ENST00000516161 162 ntBASIC3.33□□□□□ -1.88
SH3RF1Q7Z6J0 RNU1-48P-201ENST00000516400 162 ntBASIC3.33□□□□□ -1.88
SH3RF1Q7Z6J0 AC079600.2-201ENST00000550076 130 ntBASIC3.33□□□□□ -1.88
SH3RF1Q7Z6J0 MIR8054-201ENST00000620877 86 ntBASIC3.33□□□□□ -1.88
SH3RF1Q7Z6J0 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SH3RF1Q7Z6J0 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
SH3RF1Q7Z6J0 AC092881.1-201ENST00000638218 2733 ntBASIC3.32□□□□□ -1.88
SH3RF1Q7Z6J0 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.32□□□□□ -1.88
SH3RF1Q7Z6J0 SNORA1.2-201ENST00000365189 134 ntBASIC3.32□□□□□ -1.88
SH3RF1Q7Z6J0 SNORA70.7-201ENST00000384159 133 ntBASIC3.32□□□□□ -1.88
SH3RF1Q7Z6J0 RNU6-1116P-201ENST00000517269 99 ntBASIC3.32□□□□□ -1.88
SH3RF1Q7Z6J0 MIR4712-201ENST00000583750 82 ntBASIC3.32□□□□□ -1.88
SH3RF1Q7Z6J0 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC3.32□□□□□ -1.88
SH3RF1Q7Z6J0 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.32□□□□□ -1.88
SH3RF1Q7Z6J0 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
SH3RF1Q7Z6J0 POLR2J4-204ENST00000418424 324 ntBASIC3.31□□□□□ -1.88
SH3RF1Q7Z6J0 AC096720.1-201ENST00000604441 183 ntBASIC3.31□□□□□ -1.88
SH3RF1Q7Z6J0 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.31□□□□□ -1.88
SH3RF1Q7Z6J0 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SH3RF1Q7Z6J0 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC3.3□□□□□ -1.88
SH3RF1Q7Z6J0 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.3□□□□□ -1.88
SH3RF1Q7Z6J0 RPPH1-2P-201ENST00000516688 293 ntBASIC3.3□□□□□ -1.88
SH3RF1Q7Z6J0 RNU7-181P-201ENST00000517234 74 ntBASIC3.3□□□□□ -1.88
SH3RF1Q7Z6J0 AC026271.5-201ENST00000577873 130 ntBASIC3.3□□□□□ -1.88
SH3RF1Q7Z6J0 MIR3169-201ENST00000578032 83 ntBASIC3.3□□□□□ -1.88
SH3RF1Q7Z6J0 AC145423.2-201ENST00000610631 239 ntBASIC3.3□□□□□ -1.88
SH3RF1Q7Z6J0 AL449363.1-201ENST00000617815 186 ntBASIC3.3□□□□□ -1.88
SH3RF1Q7Z6J0 U4atac.1-201ENST00000618345 95 ntBASIC3.3□□□□□ -1.88
SH3RF1Q7Z6J0 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SH3RF1Q7Z6J0 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SH3RF1Q7Z6J0 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.29□□□□□ -1.88
SH3RF1Q7Z6J0 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC3.29□□□□□ -1.88
SH3RF1Q7Z6J0 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SH3RF1Q7Z6J0 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
SH3RF1Q7Z6J0 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SH3RF1Q7Z6J0 RNU6-1313P-201ENST00000362622 102 ntBASIC3.29□□□□□ -1.88
SH3RF1Q7Z6J0 RNA5SP261-201ENST00000410536 106 ntBASIC3.29□□□□□ -1.88
SH3RF1Q7Z6J0 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC3.29□□□□□ -1.88
SH3RF1Q7Z6J0 AC092185.1-201ENST00000491371 97 ntBASIC3.29□□□□□ -1.88
SH3RF1Q7Z6J0 RNU6-237P-201ENST00000515985 71 ntBASIC3.29□□□□□ -1.88
SH3RF1Q7Z6J0 RNA5SP33-201ENST00000516687 98 ntBASIC3.29□□□□□ -1.88
SH3RF1Q7Z6J0 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SH3RF1Q7Z6J0 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SH3RF1Q7Z6J0 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
SH3RF1Q7Z6J0 RNU6-616P-201ENST00000384353 107 ntBASIC3.28□□□□□ -1.88
SH3RF1Q7Z6J0 Y_RNA.494-201ENST00000384432 111 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms