Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
FOXC1Q12948 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
FOXC1Q12948 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
FOXC1Q12948 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
FOXC1Q12948 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
FOXC1Q12948 RNA5SP493-201ENST00000364115 91 ntBASIC3.21□□□□□ -1.9
FOXC1Q12948 MIR513A2-201ENST00000385249 127 ntBASIC3.21□□□□□ -1.9
FOXC1Q12948 RNU6-587P-201ENST00000391282 106 ntBASIC3.21□□□□□ -1.9
FOXC1Q12948 MIR1262-201ENST00000408276 93 ntBASIC3.21□□□□□ -1.9
FOXC1Q12948 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.21□□□□□ -1.9
FOXC1Q12948 RNU6-237P-201ENST00000515985 71 ntBASIC3.21□□□□□ -1.9
FOXC1Q12948 RNA5SP168-201ENST00000516642 112 ntBASIC3.21□□□□□ -1.9
FOXC1Q12948 GTF3AP2-201ENST00000557014 266 ntBASIC3.21□□□□□ -1.9
FOXC1Q12948 AL360157.1-201ENST00000565962 87 ntBASIC3.21□□□□□ -1.9
FOXC1Q12948 MIR3169-201ENST00000578032 83 ntBASIC3.21□□□□□ -1.9
FOXC1Q12948 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC3.21□□□□□ -1.9
FOXC1Q12948 MIR8066-201ENST00000617280 78 ntBASIC3.21□□□□□ -1.9
FOXC1Q12948 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
FOXC1Q12948 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
FOXC1Q12948 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.21□□□□□ -1.9
FOXC1Q12948 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.2□□□□□ -1.9
FOXC1Q12948 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC3.2□□□□□ -1.9
FOXC1Q12948 MIR452-201ENST00000385020 85 ntBASIC3.2□□□□□ -1.9
FOXC1Q12948 MIR136-201ENST00000385207 82 ntBASIC3.2□□□□□ -1.9
FOXC1Q12948 RPS29P31-201ENST00000446147 164 ntBASIC3.2□□□□□ -1.9
FOXC1Q12948 RNU6-807P-201ENST00000516805 107 ntBASIC3.2□□□□□ -1.9
FOXC1Q12948 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.2□□□□□ -1.9
FOXC1Q12948 MIR4484-201ENST00000582855 83 ntBASIC3.2□□□□□ -1.9
FOXC1Q12948 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC3.2□□□□□ -1.9
FOXC1Q12948 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
FOXC1Q12948 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
FOXC1Q12948 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.19□□□□□ -1.9
FOXC1Q12948 RNU4-82P-201ENST00000362443 140 ntBASIC3.19□□□□□ -1.9
FOXC1Q12948 SNORA54-201ENST00000384281 123 ntBASIC3.19□□□□□ -1.9
FOXC1Q12948 Y_RNA.537-201ENST00000384626 109 ntBASIC3.19□□□□□ -1.9
FOXC1Q12948 MIR635-201ENST00000384830 98 ntBASIC3.19□□□□□ -1.9
FOXC1Q12948 AC074348.1-201ENST00000426503 132 ntBASIC3.19□□□□□ -1.9
FOXC1Q12948 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.19□□□□□ -1.9
FOXC1Q12948 AL355297.2-201ENST00000604792 129 ntBASIC3.19□□□□□ -1.9
FOXC1Q12948 MIR664A-201ENST00000626086 82 ntBASIC3.19□□□□□ -1.9
FOXC1Q12948 Z97988.1-201ENST00000637697 135 ntBASIC3.19□□□□□ -1.9
FOXC1Q12948 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
FOXC1Q12948 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
FOXC1Q12948 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
FOXC1Q12948 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.18□□□□□ -1.9
FOXC1Q12948 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXC1Q12948 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
FOXC1Q12948 SNORA68.1-201ENST00000364537 132 ntBASIC3.18□□□□□ -1.9
FOXC1Q12948 SNORA25.9-201ENST00000365087 128 ntBASIC3.18□□□□□ -1.9
FOXC1Q12948 RNU6-296P-201ENST00000384608 107 ntBASIC3.18□□□□□ -1.9
FOXC1Q12948 RNA5SP508-201ENST00000411327 119 ntBASIC3.18□□□□□ -1.9
FOXC1Q12948 AC022018.1-201ENST00000430685 241 ntBASIC3.18□□□□□ -1.9
FOXC1Q12948 HSPE1P9-201ENST00000440046 311 ntBASIC3.18□□□□□ -1.9
FOXC1Q12948 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXC1Q12948 snoU13.16-201ENST00000459350 104 ntBASIC3.18□□□□□ -1.9
FOXC1Q12948 Y_RNA.648-201ENST00000459455 110 ntBASIC3.18□□□□□ -1.9
FOXC1Q12948 SNORD123-201ENST00000459473 70 ntBASIC3.18□□□□□ -1.9
FOXC1Q12948 AC020914.4-201ENST00000597690 277 ntBASIC3.18□□□□□ -1.9
FOXC1Q12948 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.18□□□□□ -1.9
FOXC1Q12948 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.18□□□□□ -1.9
FOXC1Q12948 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
FOXC1Q12948 MAPK10-253ENST00000641010 4072 ntBASIC3.18□□□□□ -1.9
FOXC1Q12948 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
FOXC1Q12948 AC245060.5-201ENST00000610778 3293 ntBASIC3.17□□□□□ -1.9
FOXC1Q12948 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
FOXC1Q12948 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
FOXC1Q12948 Y_RNA.354-201ENST00000365448 111 ntBASIC3.17□□□□□ -1.9
FOXC1Q12948 SNORA25B-201ENST00000365507 128 ntBASIC3.17□□□□□ -1.9
FOXC1Q12948 SNORD30.1-201ENST00000391309 70 ntBASIC3.17□□□□□ -1.9
FOXC1Q12948 RNU4-83P-201ENST00000410863 133 ntBASIC3.17□□□□□ -1.9
FOXC1Q12948 AC008885.1-201ENST00000514930 301 ntBASIC3.17□□□□□ -1.9
FOXC1Q12948 AC110741.2-201ENST00000605278 268 ntBASIC3.17□□□□□ -1.9
FOXC1Q12948 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
FOXC1Q12948 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.17□□□□□ -1.9
FOXC1Q12948 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
FOXC1Q12948 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC3.16□□□□□ -1.9
FOXC1Q12948 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.16□□□□□ -1.9
FOXC1Q12948 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
FOXC1Q12948 RNA5SP292-201ENST00000390974 118 ntBASIC3.16□□□□□ -1.9
FOXC1Q12948 AC093850.1-201ENST00000454121 251 ntBASIC3.16□□□□□ -1.9
FOXC1Q12948 RNU7-12P-201ENST00000516030 62 ntBASIC3.16□□□□□ -1.9
FOXC1Q12948 MIR2114-201ENST00000516645 80 ntBASIC3.16□□□□□ -1.9
FOXC1Q12948 RNU6-579P-201ENST00000516879 102 ntBASIC3.16□□□□□ -1.9
FOXC1Q12948 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.16□□□□□ -1.9
FOXC1Q12948 RNVU1-4-201ENST00000612985 164 ntBASIC3.16□□□□□ -1.9
FOXC1Q12948 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.16□□□□□ -1.9
FOXC1Q12948 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
FOXC1Q12948 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
FOXC1Q12948 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.15□□□□□ -1.9
FOXC1Q12948 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
FOXC1Q12948 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
FOXC1Q12948 AL356274.2-201ENST00000624379 3752 ntBASIC3.15□□□□□ -1.9
FOXC1Q12948 RNA5SP306-201ENST00000411087 107 ntBASIC3.15□□□□□ -1.91
FOXC1Q12948 RN7SL594P-201ENST00000470590 287 ntBASIC3.15□□□□□ -1.91
FOXC1Q12948 SNORD14A-201ENST00000606526 91 ntBASIC3.15□□□□□ -1.91
FOXC1Q12948 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.91
FOXC1Q12948 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
FOXC1Q12948 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
FOXC1Q12948 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
FOXC1Q12948 AC093831.2-201ENST00000624393 3427 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms