Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 Y_RNA.309-201ENST00000365046 111 ntBASIC2.12□□□□□ -2.07
COL4A3Q01955 SNORA2.2-201ENST00000365473 135 ntBASIC2.12□□□□□ -2.07
COL4A3Q01955 MIR548O-201ENST00000408583 114 ntBASIC2.12□□□□□ -2.07
COL4A3Q01955 BTF3P4-201ENST00000418852 495 ntBASIC2.12□□□□□ -2.07
COL4A3Q01955 RPS26P48-201ENST00000491713 339 ntBASIC2.12□□□□□ -2.07
COL4A3Q01955 RNA5SP61-201ENST00000516453 100 ntBASIC2.12□□□□□ -2.07
COL4A3Q01955 AC007012.1-201ENST00000567192 175 ntBASIC2.12□□□□□ -2.07
COL4A3Q01955 MIR4762-201ENST00000585261 75 ntBASIC2.12□□□□□ -2.07
COL4A3Q01955 Y_RNA.783-201ENST00000613546 102 ntBASIC2.12□□□□□ -2.07
COL4A3Q01955 MIR6132-201ENST00000622083 109 ntBASIC2.12□□□□□ -2.07
COL4A3Q01955 SNORA33-201ENST00000363664 130 ntBASIC2.12□□□□□ -2.07
COL4A3Q01955 RNU6-1189P-201ENST00000383958 107 ntBASIC2.12□□□□□ -2.07
COL4A3Q01955 RNU6-880P-201ENST00000384526 107 ntBASIC2.12□□□□□ -2.07
COL4A3Q01955 AC104332.2-201ENST00000429959 156 ntBASIC2.12□□□□□ -2.07
COL4A3Q01955 MIR5002-201ENST00000584713 97 ntBASIC2.12□□□□□ -2.07
COL4A3Q01955 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.12□□□□□ -2.07
COL4A3Q01955 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
COL4A3Q01955 SNORD115-28-201ENST00000363931 81 ntBASIC2.11□□□□□ -2.07
COL4A3Q01955 SNORD14E-201ENST00000364009 85 ntBASIC2.11□□□□□ -2.07
COL4A3Q01955 RNU6-268P-201ENST00000364174 107 ntBASIC2.11□□□□□ -2.07
COL4A3Q01955 Y_RNA.265-201ENST00000364677 108 ntBASIC2.11□□□□□ -2.07
COL4A3Q01955 Y_RNA.366-201ENST00000365540 102 ntBASIC2.11□□□□□ -2.07
COL4A3Q01955 RNA5SP482-201ENST00000391269 118 ntBASIC2.11□□□□□ -2.07
COL4A3Q01955 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.11□□□□□ -2.07
COL4A3Q01955 RPL23AP63-201ENST00000498752 471 ntBASIC2.11□□□□□ -2.07
COL4A3Q01955 RNU7-28P-201ENST00000516759 62 ntBASIC2.11□□□□□ -2.07
COL4A3Q01955 AC026271.5-201ENST00000577873 130 ntBASIC2.11□□□□□ -2.07
COL4A3Q01955 ZNF720P1-201ENST00000562403 1939 ntBASIC2.11□□□□□ -2.07
COL4A3Q01955 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.11□□□□□ -2.07
COL4A3Q01955 MIR518F-201ENST00000384973 87 ntBASIC2.1□□□□□ -2.07
COL4A3Q01955 AP1B1P2-201ENST00000416196 106 ntBASIC2.1□□□□□ -2.07
COL4A3Q01955 AL031737.1-201ENST00000450125 223 ntBASIC2.1□□□□□ -2.07
COL4A3Q01955 SNORD45.4-201ENST00000516629 73 ntBASIC2.1□□□□□ -2.07
COL4A3Q01955 RNU7-70P-201ENST00000516941 66 ntBASIC2.1□□□□□ -2.07
COL4A3Q01955 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
COL4A3Q01955 U4atac.1-201ENST00000618345 95 ntBASIC2.1□□□□□ -2.07
COL4A3Q01955 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
COL4A3Q01955 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.1□□□□□ -2.07
COL4A3Q01955 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.1□□□□□ -2.07
COL4A3Q01955 Y_RNA.37-201ENST00000362606 108 ntBASIC2.09□□□□□ -2.07
COL4A3Q01955 Y_RNA.281-201ENST00000364774 94 ntBASIC2.09□□□□□ -2.07
COL4A3Q01955 Y_RNA.336-201ENST00000365307 109 ntBASIC2.09□□□□□ -2.07
COL4A3Q01955 MIR9-3-201ENST00000385084 90 ntBASIC2.09□□□□□ -2.07
COL4A3Q01955 MIR759-201ENST00000390224 91 ntBASIC2.09□□□□□ -2.07
COL4A3Q01955 COX6CP6-201ENST00000490840 228 ntBASIC2.09□□□□□ -2.07
COL4A3Q01955 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.09□□□□□ -2.07
COL4A3Q01955 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
COL4A3Q01955 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.09□□□□□ -2.08
COL4A3Q01955 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.09□□□□□ -2.08
COL4A3Q01955 RNU6-1107P-201ENST00000364817 104 ntBASIC2.09□□□□□ -2.08
COL4A3Q01955 Y_RNA.547-201ENST00000384654 119 ntBASIC2.09□□□□□ -2.08
COL4A3Q01955 MIR570-201ENST00000384917 97 ntBASIC2.09□□□□□ -2.08
COL4A3Q01955 MIR627-201ENST00000384979 97 ntBASIC2.09□□□□□ -2.08
COL4A3Q01955 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.09□□□□□ -2.08
COL4A3Q01955 RPS29P11-201ENST00000496507 171 ntBASIC2.09□□□□□ -2.08
COL4A3Q01955 RNU6-240P-201ENST00000516098 97 ntBASIC2.09□□□□□ -2.08
COL4A3Q01955 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.09□□□□□ -2.08
COL4A3Q01955 MIR3169-201ENST00000578032 83 ntBASIC2.09□□□□□ -2.08
COL4A3Q01955 DLEU2_5.2-201ENST00000610606 84 ntBASIC2.09□□□□□ -2.08
COL4A3Q01955 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
COL4A3Q01955 MIR450A1-201ENST00000362262 91 ntBASIC2.08□□□□□ -2.08
COL4A3Q01955 Y_RNA.85-201ENST00000363014 111 ntBASIC2.08□□□□□ -2.08
COL4A3Q01955 Y_RNA.351-201ENST00000365436 96 ntBASIC2.08□□□□□ -2.08
COL4A3Q01955 RNU6-106P-201ENST00000384405 107 ntBASIC2.08□□□□□ -2.08
COL4A3Q01955 RNU6-440P-201ENST00000390882 105 ntBASIC2.08□□□□□ -2.08
COL4A3Q01955 RNU4-62P-201ENST00000410125 130 ntBASIC2.08□□□□□ -2.08
COL4A3Q01955 DNAJC19P9-201ENST00000555084 351 ntBASIC2.08□□□□□ -2.08
COL4A3Q01955 MIR5197-201ENST00000583721 112 ntBASIC2.08□□□□□ -2.08
COL4A3Q01955 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.08□□□□□ -2.08
COL4A3Q01955 PVT1_3.1-201ENST00000620853 95 ntBASIC2.08□□□□□ -2.08
COL4A3Q01955 RNY4P6-201ENST00000363667 96 ntBASIC2.07□□□□□ -2.08
COL4A3Q01955 Y_RNA.495-201ENST00000384435 112 ntBASIC2.07□□□□□ -2.08
COL4A3Q01955 AC245047.3-201ENST00000429428 127 ntBASIC2.07□□□□□ -2.08
COL4A3Q01955 CALM2P4-201ENST00000430810 426 ntBASIC2.07□□□□□ -2.08
COL4A3Q01955 SNRPGP14-201ENST00000435400 219 ntBASIC2.07□□□□□ -2.08
COL4A3Q01955 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.07□□□□□ -2.08
COL4A3Q01955 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
COL4A3Q01955 RNU6-349P-201ENST00000362402 107 ntBASIC2.06□□□□□ -2.08
COL4A3Q01955 Y_RNA.198-201ENST00000364013 98 ntBASIC2.06□□□□□ -2.08
COL4A3Q01955 RNU6-32P-201ENST00000383948 107 ntBASIC2.06□□□□□ -2.08
COL4A3Q01955 RNU6-13P-201ENST00000384248 107 ntBASIC2.06□□□□□ -2.08
COL4A3Q01955 RNU6-12P-201ENST00000384604 107 ntBASIC2.06□□□□□ -2.08
COL4A3Q01955 RNU6-41P-201ENST00000384741 107 ntBASIC2.06□□□□□ -2.08
COL4A3Q01955 MIR583-201ENST00000384846 75 ntBASIC2.06□□□□□ -2.08
COL4A3Q01955 AL445685.2-201ENST00000422551 342 ntBASIC2.06□□□□□ -2.08
COL4A3Q01955 AL606517.2-201ENST00000442855 241 ntBASIC2.06□□□□□ -2.08
COL4A3Q01955 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.06□□□□□ -2.08
COL4A3Q01955 AC104435.1-201ENST00000483483 166 ntBASIC2.06□□□□□ -2.08
COL4A3Q01955 RPS29P24-201ENST00000486345 171 ntBASIC2.06□□□□□ -2.08
COL4A3Q01955 RNU7-25P-201ENST00000516544 62 ntBASIC2.06□□□□□ -2.08
COL4A3Q01955 Y_RNA.694-201ENST00000516677 117 ntBASIC2.06□□□□□ -2.08
COL4A3Q01955 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.06□□□□□ -2.08
COL4A3Q01955 AC006254.2-201ENST00000603259 279 ntBASIC2.06□□□□□ -2.08
COL4A3Q01955 BX248123.2-201ENST00000606318 124 ntBASIC2.06□□□□□ -2.08
COL4A3Q01955 AC106754.2-201ENST00000623006 233 ntBASIC2.06□□□□□ -2.08
COL4A3Q01955 MIR376A2-201ENST00000636782 80 ntBASIC2.06□□□□□ -2.08
COL4A3Q01955 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
COL4A3Q01955 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
COL4A3Q01955 RNU6-661P-201ENST00000362409 107 ntBASIC2.06□□□□□ -2.08
COL4A3Q01955 RNU6-23P-201ENST00000363283 107 ntBASIC2.06□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 381.7 ms