Protein–RNA interactions for Protein: P48059

LIMS1, LIM and senescent cell antigen-like-containing domain protein 1, humanhuman

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1P48059 RNU6-998P-201ENST00000515894 101 ntBASIC2.35□□□□□ -2.03
LIMS1P48059 SNORA31.10-201ENST00000516482 106 ntBASIC2.35□□□□□ -2.03
LIMS1P48059 AC141557.1-201ENST00000540982 400 ntBASIC2.35□□□□□ -2.03
LIMS1P48059 AC005786.1-201ENST00000588553 154 ntBASIC2.35□□□□□ -2.03
LIMS1P48059 DLEU2_5.2-201ENST00000610606 84 ntBASIC2.35□□□□□ -2.03
LIMS1P48059 MALAT1.1-201ENST00000618249 95 ntBASIC2.35□□□□□ -2.03
LIMS1P48059 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
LIMS1P48059 SNORD115-19-201ENST00000363098 82 ntBASIC2.34□□□□□ -2.03
LIMS1P48059 SNORD115-18-201ENST00000363293 82 ntBASIC2.34□□□□□ -2.03
LIMS1P48059 Y_RNA.220-201ENST00000364244 109 ntBASIC2.34□□□□□ -2.03
LIMS1P48059 SNORD115-17-201ENST00000364612 82 ntBASIC2.34□□□□□ -2.03
LIMS1P48059 SNORA27-201ENST00000384323 126 ntBASIC2.34□□□□□ -2.03
LIMS1P48059 RNY1P7-201ENST00000384743 110 ntBASIC2.34□□□□□ -2.03
LIMS1P48059 RNU7-96P-201ENST00000459535 64 ntBASIC2.34□□□□□ -2.03
LIMS1P48059 RNU6-1116P-201ENST00000517269 99 ntBASIC2.34□□□□□ -2.03
LIMS1P48059 AC062037.1-201ENST00000605302 128 ntBASIC2.34□□□□□ -2.03
LIMS1P48059 SNORA28-201ENST00000606769 126 ntBASIC2.34□□□□□ -2.03
LIMS1P48059 AL449363.1-201ENST00000617815 186 ntBASIC2.34□□□□□ -2.03
LIMS1P48059 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC2.34□□□□□ -2.03
LIMS1P48059 AC087741.2-201ENST00000619415 172 ntBASIC2.34□□□□□ -2.03
LIMS1P48059 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.33□□□□□ -2.04
LIMS1P48059 Z82195.2-201ENST00000612348 18351 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 SNORD115-34-201ENST00000362441 82 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 SNORD115-12-201ENST00000362583 82 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 SNORD115-29-201ENST00000362834 82 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 SNORD115-9-201ENST00000362912 82 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 SNORD115-21-201ENST00000362963 81 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 SNORD115-14-201ENST00000363090 81 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 SNORD115-13-201ENST00000363358 82 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 SNORD115-41-201ENST00000363608 82 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 SNORD115-11-201ENST00000363616 82 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 SNORD115-5-201ENST00000363633 82 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 SNORD115-39-201ENST00000363694 82 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 SNORD115-4-201ENST00000363810 82 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 SNORD115-16-201ENST00000363887 82 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 SNORD115-6-201ENST00000363942 82 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 SNORD115-42-201ENST00000364273 82 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 RNU4-16P-201ENST00000364737 141 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 SNORD115-15-201ENST00000364809 81 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 SNORD115-1-201ENST00000364961 82 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 SNORD115-26-201ENST00000365067 82 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 SNORD115-10-201ENST00000365073 81 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 SNORD115-43-201ENST00000365503 82 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 SNORD115-36-201ENST00000365629 82 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 RNU6-816P-201ENST00000390914 107 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 RNU6-1268P-201ENST00000391214 107 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 RNU6-1239P-201ENST00000391310 107 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 RN7SKP200-201ENST00000410564 320 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 AL035398.1-201ENST00000430869 322 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 RPL39P25-201ENST00000449384 154 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 RNA5SP82-201ENST00000516707 92 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 RNA5SP402-201ENST00000517148 110 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 SNORD115-40-201ENST00000606510 82 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 AL137847.3-201ENST00000611521 109 ntBASIC2.33□□□□□ -2.04
LIMS1P48059 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.32□□□□□ -2.04
LIMS1P48059 RNU6-661P-201ENST00000362409 107 ntBASIC2.32□□□□□ -2.04
LIMS1P48059 RNU1-58P-201ENST00000362413 163 ntBASIC2.32□□□□□ -2.04
LIMS1P48059 RNU6-859P-201ENST00000362728 107 ntBASIC2.32□□□□□ -2.04
LIMS1P48059 RNA5SP456-201ENST00000364002 114 ntBASIC2.32□□□□□ -2.04
LIMS1P48059 RNU6-1019P-201ENST00000364424 107 ntBASIC2.32□□□□□ -2.04
LIMS1P48059 Y_RNA.342-201ENST00000365352 113 ntBASIC2.32□□□□□ -2.04
LIMS1P48059 RNU6-163P-201ENST00000384396 106 ntBASIC2.32□□□□□ -2.04
LIMS1P48059 Y_RNA.494-201ENST00000384432 111 ntBASIC2.32□□□□□ -2.04
LIMS1P48059 MIR29C-201ENST00000385231 88 ntBASIC2.32□□□□□ -2.04
LIMS1P48059 UBL5P3-201ENST00000475112 231 ntBASIC2.32□□□□□ -2.04
LIMS1P48059 RPS23P4-201ENST00000487908 423 ntBASIC2.32□□□□□ -2.04
LIMS1P48059 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.32□□□□□ -2.04
LIMS1P48059 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.32□□□□□ -2.04
LIMS1P48059 RNU7-6P-201ENST00000516845 62 ntBASIC2.32□□□□□ -2.04
LIMS1P48059 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.32□□□□□ -2.04
LIMS1P48059 AC090821.2-201ENST00000523552 176 ntBASIC2.32□□□□□ -2.04
LIMS1P48059 AC026271.5-201ENST00000577873 130 ntBASIC2.32□□□□□ -2.04
LIMS1P48059 AC069114.2-201ENST00000604699 304 ntBASIC2.32□□□□□ -2.04
LIMS1P48059 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.32□□□□□ -2.04
LIMS1P48059 Y_RNA.107-201ENST00000363190 121 ntBASIC2.31□□□□□ -2.04
LIMS1P48059 Y_RNA.241-201ENST00000364470 117 ntBASIC2.31□□□□□ -2.04
LIMS1P48059 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
LIMS1P48059 RPS3AP1-201ENST00000413190 320 ntBASIC2.31□□□□□ -2.04
LIMS1P48059 SNORD109B-201ENST00000458961 67 ntBASIC2.31□□□□□ -2.04
LIMS1P48059 SNORD109A-201ENST00000459128 67 ntBASIC2.31□□□□□ -2.04
LIMS1P48059 RN7SKP132-201ENST00000516001 208 ntBASIC2.31□□□□□ -2.04
LIMS1P48059 IGHVII-40-1-201ENST00000517316 58 ntBASIC2.31□□□□□ -2.04
LIMS1P48059 MIR3618-201ENST00000580330 88 ntBASIC2.31□□□□□ -2.04
LIMS1P48059 AC021613.1-201ENST00000623880 111 ntBASIC2.31□□□□□ -2.04
LIMS1P48059 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.31□□□□□ -2.04
LIMS1P48059 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
LIMS1P48059 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
LIMS1P48059 RNU6-833P-201ENST00000363486 107 ntBASIC2.3□□□□□ -2.04
LIMS1P48059 RNU6-1099P-201ENST00000363533 107 ntBASIC2.3□□□□□ -2.04
LIMS1P48059 RNU6-424P-201ENST00000384367 105 ntBASIC2.3□□□□□ -2.04
LIMS1P48059 POLR2J4-204ENST00000418424 324 ntBASIC2.3□□□□□ -2.04
LIMS1P48059 SNX2P2-201ENST00000424553 323 ntBASIC2.3□□□□□ -2.04
LIMS1P48059 AC015922.2-201ENST00000435593 184 ntBASIC2.3□□□□□ -2.04
LIMS1P48059 HSPE1P9-201ENST00000440046 311 ntBASIC2.3□□□□□ -2.04
LIMS1P48059 AC113410.1-201ENST00000505029 247 ntBASIC2.3□□□□□ -2.04
LIMS1P48059 RNU6ATAC17P-201ENST00000516074 71 ntBASIC2.3□□□□□ -2.04
LIMS1P48059 IGLV3-17-201ENST00000519099 244 ntBASIC2.3□□□□□ -2.04
LIMS1P48059 DEFB131E-201ENST00000532329 154 ntBASIC2.3□□□□□ -2.04
LIMS1P48059 AC004812.1-201ENST00000540773 146 ntBASIC2.3□□□□□ -2.04
LIMS1P48059 MIR5694-201ENST00000581190 76 ntBASIC2.3□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 194 ms