Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.07□□□□□ -2.08
CBX4O00257 Y_RNA.338-201ENST00000365320 114 ntBASIC2.07□□□□□ -2.08
CBX4O00257 Y_RNA.497-201ENST00000384447 98 ntBASIC2.07□□□□□ -2.08
CBX4O00257 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.07□□□□□ -2.08
CBX4O00257 AC087499.4-201ENST00000448505 178 ntBASIC2.07□□□□□ -2.08
CBX4O00257 SUMO2P16-201ENST00000519475 264 ntBASIC2.07□□□□□ -2.08
CBX4O00257 AC131055.1-201ENST00000584626 316 ntBASIC2.07□□□□□ -2.08
CBX4O00257 AP000553.5-201ENST00000641933 54 ntBASIC2.07□□□□□ -2.08
CBX4O00257 Y_RNA.37-201ENST00000362606 108 ntBASIC2.06□□□□□ -2.08
CBX4O00257 RNU1-17P-201ENST00000363022 152 ntBASIC2.06□□□□□ -2.08
CBX4O00257 RNA5SP259-201ENST00000365541 109 ntBASIC2.06□□□□□ -2.08
CBX4O00257 RNU6-1189P-201ENST00000383958 107 ntBASIC2.06□□□□□ -2.08
CBX4O00257 Y_RNA.568-201ENST00000384742 113 ntBASIC2.06□□□□□ -2.08
CBX4O00257 MIR513A1-201ENST00000385138 129 ntBASIC2.06□□□□□ -2.08
CBX4O00257 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
CBX4O00257 AL356379.1-201ENST00000414105 126 ntBASIC2.06□□□□□ -2.08
CBX4O00257 AL161935.2-201ENST00000414627 60 ntBASIC2.06□□□□□ -2.08
CBX4O00257 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC2.06□□□□□ -2.08
CBX4O00257 AF228730.3-201ENST00000436691 102 ntBASIC2.06□□□□□ -2.08
CBX4O00257 TMSB4XP3-201ENST00000445144 114 ntBASIC2.06□□□□□ -2.08
CBX4O00257 RPS27P21-201ENST00000486977 252 ntBASIC2.06□□□□□ -2.08
CBX4O00257 AC106754.2-201ENST00000623006 233 ntBASIC2.06□□□□□ -2.08
CBX4O00257 AC095038.3-201ENST00000634439 195 ntBASIC2.06□□□□□ -2.08
CBX4O00257 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.05□□□□□ -2.08
CBX4O00257 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.05□□□□□ -2.08
CBX4O00257 RNU6-457P-201ENST00000363999 107 ntBASIC2.05□□□□□ -2.08
CBX4O00257 RNU6-704P-201ENST00000364162 103 ntBASIC2.05□□□□□ -2.08
CBX4O00257 SNORD77.3-201ENST00000391113 65 ntBASIC2.05□□□□□ -2.08
CBX4O00257 HMGN2P19-201ENST00000425149 265 ntBASIC2.05□□□□□ -2.08
CBX4O00257 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC2.05□□□□□ -2.08
CBX4O00257 AC092991.1-201ENST00000477176 376 ntBASIC2.05□□□□□ -2.08
CBX4O00257 RNU6-322P-201ENST00000516010 103 ntBASIC2.05□□□□□ -2.08
CBX4O00257 FAM106DP-201ENST00000586416 501 ntBASIC2.05□□□□□ -2.08
CBX4O00257 AC091895.1-201ENST00000624494 256 ntBASIC2.05□□□□□ -2.08
CBX4O00257 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.04□□□□□ -2.08
CBX4O00257 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
CBX4O00257 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
CBX4O00257 RNA5SP160-201ENST00000364866 120 ntBASIC2.04□□□□□ -2.08
CBX4O00257 SNORD18B-201ENST00000365659 72 ntBASIC2.04□□□□□ -2.08
CBX4O00257 MIR30A-201ENST00000385092 71 ntBASIC2.04□□□□□ -2.08
CBX4O00257 AL021397.1-201ENST00000451806 248 ntBASIC2.04□□□□□ -2.08
CBX4O00257 RNU7-197P-201ENST00000458836 62 ntBASIC2.04□□□□□ -2.08
CBX4O00257 RNU4-57P-201ENST00000515980 135 ntBASIC2.04□□□□□ -2.08
CBX4O00257 RNU6-789P-201ENST00000517105 102 ntBASIC2.04□□□□□ -2.08
CBX4O00257 IGHVIII-67-2-201ENST00000519849 88 ntBASIC2.04□□□□□ -2.08
CBX4O00257 AP003484.1-201ENST00000530974 250 ntBASIC2.04□□□□□ -2.08
CBX4O00257 AC002984.1-201ENST00000591692 448 ntBASIC2.04□□□□□ -2.08
CBX4O00257 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
CBX4O00257 AC010332.2-201ENST00000613083 1904 ntBASIC2.03□□□□□ -2.08
CBX4O00257 Y_RNA.4-201ENST00000362333 112 ntBASIC2.03□□□□□ -2.08
CBX4O00257 SNORA1.2-201ENST00000365189 134 ntBASIC2.03□□□□□ -2.08
CBX4O00257 SNORA2.2-201ENST00000365473 135 ntBASIC2.03□□□□□ -2.08
CBX4O00257 Y_RNA.420-201ENST00000384043 110 ntBASIC2.03□□□□□ -2.08
CBX4O00257 RNU4-52P-201ENST00000384209 138 ntBASIC2.03□□□□□ -2.08
CBX4O00257 MIR526A1-201ENST00000384897 85 ntBASIC2.03□□□□□ -2.08
CBX4O00257 U8.17-201ENST00000391292 132 ntBASIC2.03□□□□□ -2.08
CBX4O00257 HMGN2P38-201ENST00000423806 265 ntBASIC2.03□□□□□ -2.08
CBX4O00257 AC025033.1-201ENST00000463883 194 ntBASIC2.03□□□□□ -2.08
CBX4O00257 AC090255.1-201ENST00000495779 349 ntBASIC2.03□□□□□ -2.08
CBX4O00257 RNU1-40P-201ENST00000516816 164 ntBASIC2.03□□□□□ -2.08
CBX4O00257 RNU1-97P-201ENST00000516872 164 ntBASIC2.03□□□□□ -2.08
CBX4O00257 MIR5197-201ENST00000583721 112 ntBASIC2.03□□□□□ -2.08
CBX4O00257 AC103810.8-201ENST00000607347 118 ntBASIC2.03□□□□□ -2.08
CBX4O00257 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
CBX4O00257 Y_RNA.251-201ENST00000364551 99 ntBASIC2.02□□□□□ -2.09
CBX4O00257 SNORA40-201ENST00000388090 126 ntBASIC2.02□□□□□ -2.09
CBX4O00257 RNU6-460P-201ENST00000391158 108 ntBASIC2.02□□□□□ -2.09
CBX4O00257 SNORA40.18-201ENST00000391200 128 ntBASIC2.02□□□□□ -2.09
CBX4O00257 SNORA26.9-201ENST00000391322 122 ntBASIC2.02□□□□□ -2.09
CBX4O00257 SNORA18.7-201ENST00000516910 131 ntBASIC2.02□□□□□ -2.09
CBX4O00257 AP001328.1-201ENST00000528550 176 ntBASIC2.02□□□□□ -2.09
CBX4O00257 SNORA77B-201ENST00000578179 125 ntBASIC2.02□□□□□ -2.09
CBX4O00257 MIR5089-201ENST00000580047 84 ntBASIC2.02□□□□□ -2.09
CBX4O00257 AP000942.3-201ENST00000603702 160 ntBASIC2.02□□□□□ -2.09
CBX4O00257 SNRPGP19-201ENST00000603826 189 ntBASIC2.02□□□□□ -2.09
CBX4O00257 AL442644.1-201ENST00000454390 3105 ntBASIC2.02□□□□□ -2.09
CBX4O00257 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
CBX4O00257 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
CBX4O00257 Y_RNA.52-201ENST00000362760 96 ntBASIC2.01□□□□□ -2.09
CBX4O00257 Y_RNA.241-201ENST00000364470 117 ntBASIC2.01□□□□□ -2.09
CBX4O00257 RNA5SP37-201ENST00000365420 130 ntBASIC2.01□□□□□ -2.09
CBX4O00257 MIR676-201ENST00000390702 67 ntBASIC2.01□□□□□ -2.09
CBX4O00257 MTATP6P21-201ENST00000440681 189 ntBASIC2.01□□□□□ -2.09
CBX4O00257 snoU13.9-201ENST00000458927 103 ntBASIC2.01□□□□□ -2.09
CBX4O00257 AC107297.1-201ENST00000459991 176 ntBASIC2.01□□□□□ -2.09
CBX4O00257 SNORD36C-201ENST00000516733 66 ntBASIC2.01□□□□□ -2.09
CBX4O00257 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2□□□□□ -2.09
CBX4O00257 Y_RNA.120-201ENST00000363304 110 ntBASIC2□□□□□ -2.09
CBX4O00257 SNORA20-201ENST00000384662 132 ntBASIC2□□□□□ -2.09
CBX4O00257 MIR583-201ENST00000384846 75 ntBASIC2□□□□□ -2.09
CBX4O00257 AC019129.1-201ENST00000403786 261 ntBASIC2□□□□□ -2.09
CBX4O00257 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC2□□□□□ -2.09
CBX4O00257 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC2□□□□□ -2.09
CBX4O00257 SNORD123-201ENST00000459473 70 ntBASIC2□□□□□ -2.09
CBX4O00257 RNA5SP272-201ENST00000516095 111 ntBASIC2□□□□□ -2.09
CBX4O00257 RNU6-917P-201ENST00000516294 104 ntBASIC2□□□□□ -2.09
CBX4O00257 RNU7-70P-201ENST00000516941 66 ntBASIC2□□□□□ -2.09
CBX4O00257 RNU7-181P-201ENST00000517234 74 ntBASIC2□□□□□ -2.09
CBX4O00257 AC090049.2-201ENST00000550377 109 ntBASIC2□□□□□ -2.09
CBX4O00257 AC015688.6-201ENST00000577737 104 ntBASIC2□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 155.1 ms