Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 RNU7-67P-201ENST00000459003 62 ntBASIC3.17□□□□□ -1.9
CCDC116Q8IYX3 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC116Q8IYX3 U3.45-201ENST00000607547 219 ntBASIC3.17□□□□□ -1.9
CCDC116Q8IYX3 MIR548BB-201ENST00000626714 66 ntBASIC3.17□□□□□ -1.9
CCDC116Q8IYX3 AC017071.1-201ENST00000564407 2204 ntBASIC3.17□□□□□ -1.9
CCDC116Q8IYX3 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC116Q8IYX3 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC116Q8IYX3 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC116Q8IYX3 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC116Q8IYX3 RNA5SP119-201ENST00000362715 117 ntBASIC3.16□□□□□ -1.9
CCDC116Q8IYX3 RNU6-509P-201ENST00000363519 107 ntBASIC3.16□□□□□ -1.9
CCDC116Q8IYX3 RNA5SP50-201ENST00000363731 107 ntBASIC3.16□□□□□ -1.9
CCDC116Q8IYX3 RNU6-776P-201ENST00000364403 104 ntBASIC3.16□□□□□ -1.9
CCDC116Q8IYX3 RNU6-1022P-201ENST00000365049 104 ntBASIC3.16□□□□□ -1.9
CCDC116Q8IYX3 U8.9-201ENST00000365667 134 ntBASIC3.16□□□□□ -1.9
CCDC116Q8IYX3 MIR516B2-201ENST00000385190 85 ntBASIC3.16□□□□□ -1.9
CCDC116Q8IYX3 MIR887-201ENST00000401258 79 ntBASIC3.16□□□□□ -1.9
CCDC116Q8IYX3 RN7SKP111-201ENST00000410349 271 ntBASIC3.16□□□□□ -1.9
CCDC116Q8IYX3 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC116Q8IYX3 AC073261.1-201ENST00000429409 121 ntBASIC3.16□□□□□ -1.9
CCDC116Q8IYX3 UBBP3-201ENST00000445497 241 ntBASIC3.16□□□□□ -1.9
CCDC116Q8IYX3 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC116Q8IYX3 DNAJC19P9-201ENST00000555084 351 ntBASIC3.16□□□□□ -1.9
CCDC116Q8IYX3 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC116Q8IYX3 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC116Q8IYX3 AC103810.7-201ENST00000607821 91 ntBASIC3.16□□□□□ -1.9
CCDC116Q8IYX3 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC116Q8IYX3 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC3.16□□□□□ -1.9
CCDC116Q8IYX3 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
CCDC116Q8IYX3 Y_RNA.247-201ENST00000364500 92 ntBASIC3.15□□□□□ -1.91
CCDC116Q8IYX3 RNU6-1190P-201ENST00000410811 104 ntBASIC3.15□□□□□ -1.91
CCDC116Q8IYX3 HSPE1P9-201ENST00000440046 311 ntBASIC3.15□□□□□ -1.91
CCDC116Q8IYX3 RPS29P29-201ENST00000456396 171 ntBASIC3.15□□□□□ -1.91
CCDC116Q8IYX3 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.15□□□□□ -1.91
CCDC116Q8IYX3 MIR4791-201ENST00000607666 84 ntBASIC3.15□□□□□ -1.91
CCDC116Q8IYX3 MIR6717-201ENST00000622747 73 ntBASIC3.15□□□□□ -1.91
CCDC116Q8IYX3 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC116Q8IYX3 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC116Q8IYX3 RNU6-461P-201ENST00000364195 107 ntBASIC3.14□□□□□ -1.91
CCDC116Q8IYX3 MIR490-201ENST00000384865 128 ntBASIC3.14□□□□□ -1.91
CCDC116Q8IYX3 NDUFB4P4-201ENST00000404822 243 ntBASIC3.14□□□□□ -1.91
CCDC116Q8IYX3 Y_RNA.607-201ENST00000410597 98 ntBASIC3.14□□□□□ -1.91
CCDC116Q8IYX3 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC116Q8IYX3 UBL5P1-201ENST00000507979 193 ntBASIC3.14□□□□□ -1.91
CCDC116Q8IYX3 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC116Q8IYX3 RNA5SP168-201ENST00000516642 112 ntBASIC3.14□□□□□ -1.91
CCDC116Q8IYX3 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC116Q8IYX3 MIR3616-201ENST00000584070 92 ntBASIC3.14□□□□□ -1.91
CCDC116Q8IYX3 AC069114.2-201ENST00000604699 304 ntBASIC3.14□□□□□ -1.91
CCDC116Q8IYX3 RNU6-86P-201ENST00000606534 107 ntBASIC3.14□□□□□ -1.91
CCDC116Q8IYX3 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.13□□□□□ -1.91
CCDC116Q8IYX3 SNORD115-3-201ENST00000363100 82 ntBASIC3.13□□□□□ -1.91
CCDC116Q8IYX3 RNU6-1019P-201ENST00000364424 107 ntBASIC3.13□□□□□ -1.91
CCDC116Q8IYX3 MIR34B-201ENST00000385076 84 ntBASIC3.13□□□□□ -1.91
CCDC116Q8IYX3 AL034345.1-201ENST00000407768 123 ntBASIC3.13□□□□□ -1.91
CCDC116Q8IYX3 RN7SKP123-201ENST00000410732 291 ntBASIC3.13□□□□□ -1.91
CCDC116Q8IYX3 RNA5SP492-201ENST00000411330 114 ntBASIC3.13□□□□□ -1.91
CCDC116Q8IYX3 AC093578.1-201ENST00000415219 368 ntBASIC3.13□□□□□ -1.91
CCDC116Q8IYX3 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.13□□□□□ -1.91
CCDC116Q8IYX3 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.13□□□□□ -1.91
CCDC116Q8IYX3 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC116Q8IYX3 RNU7-12P-201ENST00000516030 62 ntBASIC3.13□□□□□ -1.91
CCDC116Q8IYX3 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.13□□□□□ -1.91
CCDC116Q8IYX3 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC116Q8IYX3 AC005786.1-201ENST00000588553 154 ntBASIC3.13□□□□□ -1.91
CCDC116Q8IYX3 uc_338.1-201ENST00000612113 180 ntBASIC3.13□□□□□ -1.91
CCDC116Q8IYX3 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC3.13□□□□□ -1.91
CCDC116Q8IYX3 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC116Q8IYX3 AL356274.2-201ENST00000624379 3752 ntBASIC3.13□□□□□ -1.91
CCDC116Q8IYX3 RNU6-1163P-201ENST00000364516 107 ntBASIC3.12□□□□□ -1.91
CCDC116Q8IYX3 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC116Q8IYX3 SNORA24-201ENST00000384096 131 ntBASIC3.12□□□□□ -1.91
CCDC116Q8IYX3 RPS12P2-201ENST00000439728 269 ntBASIC3.12□□□□□ -1.91
CCDC116Q8IYX3 RN7SL293P-201ENST00000481765 281 ntBASIC3.12□□□□□ -1.91
CCDC116Q8IYX3 RNU6-1006P-201ENST00000516998 103 ntBASIC3.12□□□□□ -1.91
CCDC116Q8IYX3 AL020996.3-201ENST00000606617 222 ntBASIC3.12□□□□□ -1.91
CCDC116Q8IYX3 U4atac.1-201ENST00000618345 95 ntBASIC3.12□□□□□ -1.91
CCDC116Q8IYX3 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC116Q8IYX3 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
CCDC116Q8IYX3 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC116Q8IYX3 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC116Q8IYX3 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC116Q8IYX3 RNU6-633P-201ENST00000362612 103 ntBASIC3.11□□□□□ -1.91
CCDC116Q8IYX3 Y_RNA.140-201ENST00000363474 103 ntBASIC3.11□□□□□ -1.91
CCDC116Q8IYX3 RNA5SP72-201ENST00000364442 117 ntBASIC3.11□□□□□ -1.91
CCDC116Q8IYX3 MIR452-201ENST00000385020 85 ntBASIC3.11□□□□□ -1.91
CCDC116Q8IYX3 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
CCDC116Q8IYX3 HMGN1P18-201ENST00000457642 277 ntBASIC3.11□□□□□ -1.91
CCDC116Q8IYX3 RNU7-2P-201ENST00000516096 62 ntBASIC3.11□□□□□ -1.91
CCDC116Q8IYX3 MIR3200-201ENST00000580767 85 ntBASIC3.11□□□□□ -1.91
CCDC116Q8IYX3 MIR4276-201ENST00000584832 70 ntBASIC3.11□□□□□ -1.91
CCDC116Q8IYX3 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.11□□□□□ -1.91
CCDC116Q8IYX3 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.11□□□□□ -1.91
CCDC116Q8IYX3 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC116Q8IYX3 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
CCDC116Q8IYX3 RNU1-70P-201ENST00000362618 164 ntBASIC3.1□□□□□ -1.91
CCDC116Q8IYX3 RNU6-913P-201ENST00000390913 95 ntBASIC3.1□□□□□ -1.91
CCDC116Q8IYX3 Y_RNA.609-201ENST00000410669 89 ntBASIC3.1□□□□□ -1.91
CCDC116Q8IYX3 CST9LP2-201ENST00000437612 320 ntBASIC3.1□□□□□ -1.91
CCDC116Q8IYX3 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 209 ms