Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 MIR452-201ENST00000385020 85 ntBASIC2.57□□□□□ -2
UBE3DQ7Z6J8 SNORD88.1-201ENST00000408684 91 ntBASIC2.57□□□□□ -2
UBE3DQ7Z6J8 RNY4P30-201ENST00000410216 95 ntBASIC2.57□□□□□ -2
UBE3DQ7Z6J8 BX510359.4-201ENST00000423750 193 ntBASIC2.57□□□□□ -2
UBE3DQ7Z6J8 AC107297.1-201ENST00000459991 176 ntBASIC2.57□□□□□ -2
UBE3DQ7Z6J8 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.57□□□□□ -2
UBE3DQ7Z6J8 AC090821.2-201ENST00000523552 176 ntBASIC2.57□□□□□ -2
UBE3DQ7Z6J8 MIR5094-201ENST00000578766 85 ntBASIC2.57□□□□□ -2
UBE3DQ7Z6J8 MIR2052-201ENST00000636055 55 ntBASIC2.57□□□□□ -2
UBE3DQ7Z6J8 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.57□□□□□ -2
UBE3DQ7Z6J8 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
UBE3DQ7Z6J8 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.56□□□□□ -2
UBE3DQ7Z6J8 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.56□□□□□ -2
UBE3DQ7Z6J8 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.56□□□□□ -2
UBE3DQ7Z6J8 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.56□□□□□ -2
UBE3DQ7Z6J8 SNORA80A-201ENST00000363922 136 ntBASIC2.56□□□□□ -2
UBE3DQ7Z6J8 Z92545.1-201ENST00000411782 234 ntBASIC2.56□□□□□ -2
UBE3DQ7Z6J8 AL022718.1-201ENST00000412004 84 ntBASIC2.56□□□□□ -2
UBE3DQ7Z6J8 AC105272.1-201ENST00000438604 198 ntBASIC2.56□□□□□ -2
UBE3DQ7Z6J8 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC2.56□□□□□ -2
UBE3DQ7Z6J8 RNU7-26P-201ENST00000458980 63 ntBASIC2.56□□□□□ -2
UBE3DQ7Z6J8 RNU6-970P-201ENST00000516312 107 ntBASIC2.56□□□□□ -2
UBE3DQ7Z6J8 RNU6-826P-201ENST00000516827 104 ntBASIC2.56□□□□□ -2
UBE3DQ7Z6J8 AC002984.1-201ENST00000591692 448 ntBASIC2.56□□□□□ -2
UBE3DQ7Z6J8 AC006386.2-201ENST00000624491 75 ntBASIC2.56□□□□□ -2
UBE3DQ7Z6J8 AC012005.1-201ENST00000624575 75 ntBASIC2.56□□□□□ -2
UBE3DQ7Z6J8 AL162726.3-218ENST00000636401 95 ntBASIC2.56□□□□□ -2
UBE3DQ7Z6J8 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
UBE3DQ7Z6J8 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.56□□□□□ -2
UBE3DQ7Z6J8 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
UBE3DQ7Z6J8 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
UBE3DQ7Z6J8 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
UBE3DQ7Z6J8 MIR302B-201ENST00000362188 73 ntBASIC2.55□□□□□ -2
UBE3DQ7Z6J8 Y_RNA.299-201ENST00000364973 94 ntBASIC2.55□□□□□ -2
UBE3DQ7Z6J8 Y_RNA.344-201ENST00000365381 112 ntBASIC2.55□□□□□ -2
UBE3DQ7Z6J8 MIR520A-201ENST00000384862 85 ntBASIC2.55□□□□□ -2
UBE3DQ7Z6J8 MT-TI-201ENST00000387365 69 ntBASIC2.55□□□□□ -2
UBE3DQ7Z6J8 RNU11-3P-201ENST00000391111 133 ntBASIC2.55□□□□□ -2
UBE3DQ7Z6J8 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
UBE3DQ7Z6J8 MIR1267-201ENST00000408723 78 ntBASIC2.55□□□□□ -2
UBE3DQ7Z6J8 RNA5SP144-201ENST00000410846 116 ntBASIC2.55□□□□□ -2
UBE3DQ7Z6J8 HSPE1P9-201ENST00000440046 311 ntBASIC2.55□□□□□ -2
UBE3DQ7Z6J8 RNU2-35P-201ENST00000516446 142 ntBASIC2.55□□□□□ -2
UBE3DQ7Z6J8 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.55□□□□□ -2
UBE3DQ7Z6J8 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.55□□□□□ -2
UBE3DQ7Z6J8 AC007336.1-201ENST00000576365 3828 ntBASIC2.55□□□□□ -2
UBE3DQ7Z6J8 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.55□□□□□ -2
UBE3DQ7Z6J8 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.54□□□□□ -2
UBE3DQ7Z6J8 RNU6-1031P-201ENST00000384773 107 ntBASIC2.54□□□□□ -2
UBE3DQ7Z6J8 MIR9-1-201ENST00000385198 89 ntBASIC2.54□□□□□ -2
UBE3DQ7Z6J8 SNORA48.1-201ENST00000390879 135 ntBASIC2.54□□□□□ -2
UBE3DQ7Z6J8 MIR1283-2-201ENST00000408621 87 ntBASIC2.54□□□□□ -2
UBE3DQ7Z6J8 ATP6V0E1P1-201ENST00000412537 226 ntBASIC2.54□□□□□ -2
UBE3DQ7Z6J8 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.54□□□□□ -2
UBE3DQ7Z6J8 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.54□□□□□ -2
UBE3DQ7Z6J8 RNA5SP168-201ENST00000516642 112 ntBASIC2.54□□□□□ -2
UBE3DQ7Z6J8 RNA5SP481-201ENST00000516814 122 ntBASIC2.54□□□□□ -2
UBE3DQ7Z6J8 RNU6-1116P-201ENST00000517269 99 ntBASIC2.54□□□□□ -2
UBE3DQ7Z6J8 GTF3AP2-201ENST00000557014 266 ntBASIC2.54□□□□□ -2
UBE3DQ7Z6J8 ELOCP29-201ENST00000588193 334 ntBASIC2.54□□□□□ -2
UBE3DQ7Z6J8 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC2.54□□□□□ -2
UBE3DQ7Z6J8 AC021613.1-201ENST00000623880 111 ntBASIC2.54□□□□□ -2
UBE3DQ7Z6J8 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
UBE3DQ7Z6J8 AC009487.2-201ENST00000420969 6821 ntBASIC2.54□□□□□ -2
UBE3DQ7Z6J8 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.53□□□□□ -2
UBE3DQ7Z6J8 RNU6-661P-201ENST00000362409 107 ntBASIC2.53□□□□□ -2
UBE3DQ7Z6J8 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.53□□□□□ -2
UBE3DQ7Z6J8 U8.16-201ENST00000391279 133 ntBASIC2.53□□□□□ -2
UBE3DQ7Z6J8 RNA5SP261-201ENST00000410536 106 ntBASIC2.53□□□□□ -2
UBE3DQ7Z6J8 COTL1P1-201ENST00000422309 375 ntBASIC2.53□□□□□ -2
UBE3DQ7Z6J8 UBBP3-201ENST00000445497 241 ntBASIC2.53□□□□□ -2
UBE3DQ7Z6J8 RPPH1-2P-201ENST00000516688 293 ntBASIC2.53□□□□□ -2
UBE3DQ7Z6J8 AC022202.1-201ENST00000613515 211 ntBASIC2.53□□□□□ -2
UBE3DQ7Z6J8 AL513423.1-201ENST00000621695 132 ntBASIC2.53□□□□□ -2
UBE3DQ7Z6J8 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.53□□□□□ -2
UBE3DQ7Z6J8 AL161431.1-201ENST00000618966 4205 ntBASIC2.53□□□□□ -2.01
UBE3DQ7Z6J8 VTRNA1-1-201ENST00000363120 99 ntBASIC2.52□□□□□ -2.01
UBE3DQ7Z6J8 SNORD56.5-201ENST00000364281 72 ntBASIC2.52□□□□□ -2.01
UBE3DQ7Z6J8 RNU6-1104P-201ENST00000384723 104 ntBASIC2.52□□□□□ -2.01
UBE3DQ7Z6J8 MIR518A2-201ENST00000384966 87 ntBASIC2.52□□□□□ -2.01
UBE3DQ7Z6J8 SNX2P2-201ENST00000424553 323 ntBASIC2.52□□□□□ -2.01
UBE3DQ7Z6J8 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.52□□□□□ -2.01
UBE3DQ7Z6J8 RPS23P4-201ENST00000487908 423 ntBASIC2.52□□□□□ -2.01
UBE3DQ7Z6J8 RNU7-12P-201ENST00000516030 62 ntBASIC2.52□□□□□ -2.01
UBE3DQ7Z6J8 RNU6-904P-201ENST00000516206 101 ntBASIC2.52□□□□□ -2.01
UBE3DQ7Z6J8 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
UBE3DQ7Z6J8 MIR4635-201ENST00000583759 79 ntBASIC2.52□□□□□ -2.01
UBE3DQ7Z6J8 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.52□□□□□ -2.01
UBE3DQ7Z6J8 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.52□□□□□ -2.01
UBE3DQ7Z6J8 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.51□□□□□ -2.01
UBE3DQ7Z6J8 SNORD115-19-201ENST00000363098 82 ntBASIC2.51□□□□□ -2.01
UBE3DQ7Z6J8 SNORD115-18-201ENST00000363293 82 ntBASIC2.51□□□□□ -2.01
UBE3DQ7Z6J8 SNORD115-17-201ENST00000364612 82 ntBASIC2.51□□□□□ -2.01
UBE3DQ7Z6J8 MIR597-201ENST00000384968 97 ntBASIC2.51□□□□□ -2.01
UBE3DQ7Z6J8 MIR136-201ENST00000385207 82 ntBASIC2.51□□□□□ -2.01
UBE3DQ7Z6J8 UBL5P3-201ENST00000475112 231 ntBASIC2.51□□□□□ -2.01
UBE3DQ7Z6J8 RNU7-53P-201ENST00000516705 60 ntBASIC2.51□□□□□ -2.01
UBE3DQ7Z6J8 AC022523.2-201ENST00000561045 150 ntBASIC2.51□□□□□ -2.01
UBE3DQ7Z6J8 SUB1P4-201ENST00000566062 339 ntBASIC2.51□□□□□ -2.01
UBE3DQ7Z6J8 MIR3152-201ENST00000579801 74 ntBASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 239.5 ms