Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 MIR622-201ENST00000638396 96 ntBASIC3.45□□□□□ -1.86
SH3RF1Q7Z6J0 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
SH3RF1Q7Z6J0 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
SH3RF1Q7Z6J0 Y_RNA.377-201ENST00000365644 108 ntBASIC3.44□□□□□ -1.86
SH3RF1Q7Z6J0 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.44□□□□□ -1.86
SH3RF1Q7Z6J0 RNA5SP144-201ENST00000410846 116 ntBASIC3.44□□□□□ -1.86
SH3RF1Q7Z6J0 AC006483.1-201ENST00000487308 313 ntBASIC3.44□□□□□ -1.86
SH3RF1Q7Z6J0 RPS23P4-201ENST00000487908 423 ntBASIC3.44□□□□□ -1.86
SH3RF1Q7Z6J0 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.44□□□□□ -1.86
SH3RF1Q7Z6J0 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
SH3RF1Q7Z6J0 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.44□□□□□ -1.86
SH3RF1Q7Z6J0 Y_RNA.4-201ENST00000362333 112 ntBASIC3.43□□□□□ -1.86
SH3RF1Q7Z6J0 RNU6-862P-201ENST00000362804 105 ntBASIC3.43□□□□□ -1.86
SH3RF1Q7Z6J0 Y_RNA.94-201ENST00000363068 106 ntBASIC3.43□□□□□ -1.86
SH3RF1Q7Z6J0 Y_RNA.299-201ENST00000364973 94 ntBASIC3.43□□□□□ -1.86
SH3RF1Q7Z6J0 SNORA25B-201ENST00000365507 128 ntBASIC3.43□□□□□ -1.86
SH3RF1Q7Z6J0 RNU6-163P-201ENST00000384396 106 ntBASIC3.43□□□□□ -1.86
SH3RF1Q7Z6J0 RNU6-1072P-201ENST00000384703 107 ntBASIC3.43□□□□□ -1.86
SH3RF1Q7Z6J0 RNU6-443P-201ENST00000384780 107 ntBASIC3.43□□□□□ -1.86
SH3RF1Q7Z6J0 RNU7-96P-201ENST00000459535 64 ntBASIC3.43□□□□□ -1.86
SH3RF1Q7Z6J0 AC004812.1-201ENST00000540773 146 ntBASIC3.43□□□□□ -1.86
SH3RF1Q7Z6J0 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC3.43□□□□□ -1.86
SH3RF1Q7Z6J0 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
SH3RF1Q7Z6J0 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
SH3RF1Q7Z6J0 AL021368.2-201ENST00000606125 5352 ntBASIC3.43□□□□□ -1.86
SH3RF1Q7Z6J0 AC092435.3-201ENST00000565538 3654 ntBASIC3.42□□□□□ -1.86
SH3RF1Q7Z6J0 AC062016.1-201ENST00000355719 319 ntBASIC3.42□□□□□ -1.86
SH3RF1Q7Z6J0 RNU6-424P-201ENST00000384367 105 ntBASIC3.42□□□□□ -1.86
SH3RF1Q7Z6J0 SNORD67-201ENST00000390833 111 ntBASIC3.42□□□□□ -1.86
SH3RF1Q7Z6J0 SNORA11.4-201ENST00000408823 129 ntBASIC3.42□□□□□ -1.86
SH3RF1Q7Z6J0 Y_RNA.607-201ENST00000410597 98 ntBASIC3.42□□□□□ -1.86
SH3RF1Q7Z6J0 AC105272.1-201ENST00000438604 198 ntBASIC3.42□□□□□ -1.86
SH3RF1Q7Z6J0 AC018868.1-201ENST00000491307 315 ntBASIC3.42□□□□□ -1.86
SH3RF1Q7Z6J0 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC3.42□□□□□ -1.86
SH3RF1Q7Z6J0 AC007318.2-201ENST00000620999 243 ntBASIC3.42□□□□□ -1.86
SH3RF1Q7Z6J0 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
SH3RF1Q7Z6J0 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
SH3RF1Q7Z6J0 SNORD15B-201ENST00000384714 146 ntBASIC3.41□□□□□ -1.86
SH3RF1Q7Z6J0 RNU6-679P-201ENST00000391003 106 ntBASIC3.41□□□□□ -1.86
SH3RF1Q7Z6J0 Y_RNA.611-201ENST00000410682 108 ntBASIC3.41□□□□□ -1.86
SH3RF1Q7Z6J0 RNU2-40P-201ENST00000410833 196 ntBASIC3.41□□□□□ -1.86
SH3RF1Q7Z6J0 RNA5SP184-201ENST00000411071 108 ntBASIC3.41□□□□□ -1.86
SH3RF1Q7Z6J0 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC3.41□□□□□ -1.86
SH3RF1Q7Z6J0 TRIAP1P1-201ENST00000427062 225 ntBASIC3.41□□□□□ -1.86
SH3RF1Q7Z6J0 RNU6-1006P-201ENST00000516998 103 ntBASIC3.41□□□□□ -1.86
SH3RF1Q7Z6J0 SNORA28-201ENST00000606769 126 ntBASIC3.41□□□□□ -1.86
SH3RF1Q7Z6J0 AC064859.1-201ENST00000624741 174 ntBASIC3.41□□□□□ -1.86
SH3RF1Q7Z6J0 MIR548BB-201ENST00000626714 66 ntBASIC3.41□□□□□ -1.86
SH3RF1Q7Z6J0 AC095038.3-201ENST00000634439 195 ntBASIC3.41□□□□□ -1.86
SH3RF1Q7Z6J0 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
SH3RF1Q7Z6J0 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.86
SH3RF1Q7Z6J0 MIR22-201ENST00000362190 85 ntBASIC3.4□□□□□ -1.87
SH3RF1Q7Z6J0 SNORA25.6-201ENST00000364121 118 ntBASIC3.4□□□□□ -1.87
SH3RF1Q7Z6J0 Y_RNA.467-201ENST00000384297 102 ntBASIC3.4□□□□□ -1.87
SH3RF1Q7Z6J0 RNY1P4-201ENST00000384595 115 ntBASIC3.4□□□□□ -1.87
SH3RF1Q7Z6J0 MIR889-201ENST00000401280 79 ntBASIC3.4□□□□□ -1.87
SH3RF1Q7Z6J0 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC3.4□□□□□ -1.87
SH3RF1Q7Z6J0 AC114811.1-201ENST00000507207 168 ntBASIC3.4□□□□□ -1.87
SH3RF1Q7Z6J0 RNU6-998P-201ENST00000515894 101 ntBASIC3.4□□□□□ -1.87
SH3RF1Q7Z6J0 Y_RNA.659-201ENST00000515994 113 ntBASIC3.4□□□□□ -1.87
SH3RF1Q7Z6J0 AL513534.2-201ENST00000603836 250 ntBASIC3.4□□□□□ -1.87
SH3RF1Q7Z6J0 AC021613.1-201ENST00000623880 111 ntBASIC3.4□□□□□ -1.87
SH3RF1Q7Z6J0 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
SH3RF1Q7Z6J0 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
SH3RF1Q7Z6J0 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
SH3RF1Q7Z6J0 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC3.4□□□□□ -1.87
SH3RF1Q7Z6J0 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
SH3RF1Q7Z6J0 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
SH3RF1Q7Z6J0 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.39□□□□□ -1.87
SH3RF1Q7Z6J0 RNU6-509P-201ENST00000363519 107 ntBASIC3.39□□□□□ -1.87
SH3RF1Q7Z6J0 SNORD116-10-201ENST00000363791 102 ntBASIC3.39□□□□□ -1.87
SH3RF1Q7Z6J0 Y_RNA.316-201ENST00000365118 111 ntBASIC3.39□□□□□ -1.87
SH3RF1Q7Z6J0 SNORA26.7-201ENST00000391288 122 ntBASIC3.39□□□□□ -1.87
SH3RF1Q7Z6J0 AC003685.2-201ENST00000422795 395 ntBASIC3.39□□□□□ -1.87
SH3RF1Q7Z6J0 AL512326.2-201ENST00000426359 151 ntBASIC3.39□□□□□ -1.87
SH3RF1Q7Z6J0 STAG3L5P-204ENST00000443759 179 ntBASIC3.39□□□□□ -1.87
SH3RF1Q7Z6J0 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC3.39□□□□□ -1.87
SH3RF1Q7Z6J0 MIR4435-1-201ENST00000582552 80 ntBASIC3.39□□□□□ -1.87
SH3RF1Q7Z6J0 SNORA50A-202ENST00000629536 136 ntBASIC3.39□□□□□ -1.87
SH3RF1Q7Z6J0 AC093908.1-201ENST00000623125 8092 ntBASIC3.39□□□□□ -1.87
SH3RF1Q7Z6J0 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
SH3RF1Q7Z6J0 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
SH3RF1Q7Z6J0 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
SH3RF1Q7Z6J0 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC3.38□□□□□ -1.87
SH3RF1Q7Z6J0 SNORD21-201ENST00000383953 95 ntBASIC3.38□□□□□ -1.87
SH3RF1Q7Z6J0 RNU6-1201P-201ENST00000384227 107 ntBASIC3.38□□□□□ -1.87
SH3RF1Q7Z6J0 RPS29P6-201ENST00000438196 145 ntBASIC3.38□□□□□ -1.87
SH3RF1Q7Z6J0 RN7SL633P-201ENST00000488974 297 ntBASIC3.38□□□□□ -1.87
SH3RF1Q7Z6J0 ZNF861P-201ENST00000588126 639 ntBASIC3.38□□□□□ -1.87
SH3RF1Q7Z6J0 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
SH3RF1Q7Z6J0 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.38□□□□□ -1.87
SH3RF1Q7Z6J0 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
SH3RF1Q7Z6J0 AC096644.4-201ENST00000563417 2912 ntBASIC3.37□□□□□ -1.87
SH3RF1Q7Z6J0 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SH3RF1Q7Z6J0 SNORD115-34-201ENST00000362441 82 ntBASIC3.37□□□□□ -1.87
SH3RF1Q7Z6J0 SNORD115-12-201ENST00000362583 82 ntBASIC3.37□□□□□ -1.87
SH3RF1Q7Z6J0 SNORD115-29-201ENST00000362834 82 ntBASIC3.37□□□□□ -1.87
SH3RF1Q7Z6J0 SNORD115-9-201ENST00000362912 82 ntBASIC3.37□□□□□ -1.87
SH3RF1Q7Z6J0 SNORD115-21-201ENST00000362963 81 ntBASIC3.37□□□□□ -1.87
SH3RF1Q7Z6J0 SNORD115-14-201ENST00000363090 81 ntBASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms