Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 SNORA26-201ENST00000391286 122 ntBASIC2.19□□□□□ -2.06
SF3A1Q15459 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.19□□□□□ -2.06
SF3A1Q15459 RNU2-55P-201ENST00000411146 174 ntBASIC2.19□□□□□ -2.06
SF3A1Q15459 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
SF3A1Q15459 AC027119.1-201ENST00000440877 241 ntBASIC2.19□□□□□ -2.06
SF3A1Q15459 RNA5SP445-201ENST00000515889 115 ntBASIC2.19□□□□□ -2.06
SF3A1Q15459 RNU6-578P-201ENST00000390980 103 ntBASIC2.18□□□□□ -2.06
SF3A1Q15459 RNU1-78P-201ENST00000391248 165 ntBASIC2.18□□□□□ -2.06
SF3A1Q15459 RNA5SP458-201ENST00000516188 119 ntBASIC2.18□□□□□ -2.06
SF3A1Q15459 RNU6-561P-201ENST00000516222 102 ntBASIC2.18□□□□□ -2.06
SF3A1Q15459 RNU6-365P-201ENST00000517113 106 ntBASIC2.18□□□□□ -2.06
SF3A1Q15459 AC109810.1-201ENST00000534066 224 ntBASIC2.18□□□□□ -2.06
SF3A1Q15459 AP002392.1-201ENST00000537692 208 ntBASIC2.18□□□□□ -2.06
SF3A1Q15459 MIR4285-201ENST00000581001 85 ntBASIC2.18□□□□□ -2.06
SF3A1Q15459 AC108706.1-201ENST00000611053 297 ntBASIC2.18□□□□□ -2.06
SF3A1Q15459 MIR548O-201ENST00000408583 114 ntBASIC2.17□□□□□ -2.06
SF3A1Q15459 SNRPGP14-201ENST00000435400 219 ntBASIC2.17□□□□□ -2.06
SF3A1Q15459 Y_RNA.666-201ENST00000516187 112 ntBASIC2.17□□□□□ -2.06
SF3A1Q15459 SNORA18.7-201ENST00000516910 131 ntBASIC2.17□□□□□ -2.06
SF3A1Q15459 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.17□□□□□ -2.06
SF3A1Q15459 AL513534.2-201ENST00000603836 250 ntBASIC2.17□□□□□ -2.06
SF3A1Q15459 AC006441.5-201ENST00000612680 209 ntBASIC2.17□□□□□ -2.06
SF3A1Q15459 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC2.17□□□□□ -2.06
SF3A1Q15459 AP000648.3-201ENST00000623539 4507 ntBASIC2.17□□□□□ -2.06
SF3A1Q15459 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
SF3A1Q15459 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
SF3A1Q15459 RNU6-484P-201ENST00000384016 107 ntBASIC2.16□□□□□ -2.06
SF3A1Q15459 MIR653-201ENST00000385279 96 ntBASIC2.16□□□□□ -2.06
SF3A1Q15459 SNRPGP8-201ENST00000454064 226 ntBASIC2.16□□□□□ -2.06
SF3A1Q15459 AC022559.1-201ENST00000520905 205 ntBASIC2.16□□□□□ -2.06
SF3A1Q15459 CBX3P4-201ENST00000538909 354 ntBASIC2.16□□□□□ -2.06
SF3A1Q15459 Y_RNA.91-201ENST00000363042 107 ntBASIC2.15□□□□□ -2.07
SF3A1Q15459 SNORA16.1-201ENST00000364597 132 ntBASIC2.15□□□□□ -2.07
SF3A1Q15459 AC019129.1-201ENST00000403786 261 ntBASIC2.15□□□□□ -2.07
SF3A1Q15459 RPL31P63-201ENST00000422565 375 ntBASIC2.15□□□□□ -2.07
SF3A1Q15459 SNRPGP13-201ENST00000442212 177 ntBASIC2.15□□□□□ -2.07
SF3A1Q15459 AC245517.4-201ENST00000448601 281 ntBASIC2.15□□□□□ -2.07
SF3A1Q15459 Y_RNA.676-201ENST00000516393 96 ntBASIC2.15□□□□□ -2.07
SF3A1Q15459 RNU7-25P-201ENST00000516544 62 ntBASIC2.15□□□□□ -2.07
SF3A1Q15459 RNU6-1270P-201ENST00000517128 108 ntBASIC2.15□□□□□ -2.07
SF3A1Q15459 AC092881.1-201ENST00000638218 2733 ntBASIC2.14□□□□□ -2.07
SF3A1Q15459 Y_RNA.29-201ENST00000362570 113 ntBASIC2.14□□□□□ -2.07
SF3A1Q15459 Y_RNA.233-201ENST00000364407 101 ntBASIC2.14□□□□□ -2.07
SF3A1Q15459 Y_RNA.634-201ENST00000364811 113 ntBASIC2.14□□□□□ -2.07
SF3A1Q15459 Y_RNA.412-201ENST00000384001 104 ntBASIC2.14□□□□□ -2.07
SF3A1Q15459 RPS27P16-201ENST00000425758 201 ntBASIC2.14□□□□□ -2.07
SF3A1Q15459 SNORA81.3-201ENST00000517283 198 ntBASIC2.14□□□□□ -2.07
SF3A1Q15459 AP001485.1-201ENST00000604799 199 ntBASIC2.14□□□□□ -2.07
SF3A1Q15459 AL121890.5-201ENST00000620848 304 ntBASIC2.14□□□□□ -2.07
SF3A1Q15459 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
SF3A1Q15459 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.13□□□□□ -2.07
SF3A1Q15459 RNU6-275P-201ENST00000364910 107 ntBASIC2.13□□□□□ -2.07
SF3A1Q15459 Y_RNA.435-201ENST00000384095 112 ntBASIC2.13□□□□□ -2.07
SF3A1Q15459 SNORD41-201ENST00000386967 70 ntBASIC2.13□□□□□ -2.07
SF3A1Q15459 RNU6ATAC2P-201ENST00000387943 126 ntBASIC2.13□□□□□ -2.07
SF3A1Q15459 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC2.13□□□□□ -2.07
SF3A1Q15459 RNU6-693P-201ENST00000516134 107 ntBASIC2.13□□□□□ -2.07
SF3A1Q15459 RNU6-947P-201ENST00000516264 106 ntBASIC2.13□□□□□ -2.07
SF3A1Q15459 SNORD111.1-201ENST00000516421 86 ntBASIC2.13□□□□□ -2.07
SF3A1Q15459 RNA5SP153-201ENST00000516498 76 ntBASIC2.13□□□□□ -2.07
SF3A1Q15459 RNU6-504P-201ENST00000516568 104 ntBASIC2.13□□□□□ -2.07
SF3A1Q15459 RNU6-197P-201ENST00000516680 100 ntBASIC2.13□□□□□ -2.07
SF3A1Q15459 Y_RNA.700-201ENST00000516806 100 ntBASIC2.13□□□□□ -2.07
SF3A1Q15459 RNU6-295P-201ENST00000516901 104 ntBASIC2.13□□□□□ -2.07
SF3A1Q15459 AL357312.1-201ENST00000603879 298 ntBASIC2.13□□□□□ -2.07
SF3A1Q15459 GHRLOS.1-201ENST00000610995 70 ntBASIC2.13□□□□□ -2.07
SF3A1Q15459 U6.106-201ENST00000636360 105 ntBASIC2.13□□□□□ -2.07
SF3A1Q15459 ZNF355P-201ENST00000427301 3216 ntBASIC2.13□□□□□ -2.07
SF3A1Q15459 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC2.12□□□□□ -2.07
SF3A1Q15459 RPL30P7-201ENST00000479312 323 ntBASIC2.12□□□□□ -2.07
SF3A1Q15459 AC072026.1-201ENST00000605023 201 ntBASIC2.12□□□□□ -2.07
SF3A1Q15459 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC2.12□□□□□ -2.07
SF3A1Q15459 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
SF3A1Q15459 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
SF3A1Q15459 AL445685.2-201ENST00000422551 342 ntBASIC2.11□□□□□ -2.07
SF3A1Q15459 AC003989.2-201ENST00000440224 169 ntBASIC2.11□□□□□ -2.07
SF3A1Q15459 SNORD123-201ENST00000459473 70 ntBASIC2.11□□□□□ -2.07
SF3A1Q15459 RNU6-902P-201ENST00000517212 91 ntBASIC2.11□□□□□ -2.07
SF3A1Q15459 RNU6-794P-201ENST00000517261 64 ntBASIC2.11□□□□□ -2.07
SF3A1Q15459 AL512310.8-201ENST00000550183 120 ntBASIC2.11□□□□□ -2.07
SF3A1Q15459 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
SF3A1Q15459 Y_RNA.75-201ENST00000362927 97 ntBASIC2.1□□□□□ -2.07
SF3A1Q15459 Y_RNA.140-201ENST00000363474 103 ntBASIC2.1□□□□□ -2.07
SF3A1Q15459 SNORD24-201ENST00000383884 75 ntBASIC2.1□□□□□ -2.07
SF3A1Q15459 Y_RNA.547-201ENST00000384654 119 ntBASIC2.1□□□□□ -2.07
SF3A1Q15459 AC107393.1-201ENST00000512403 346 ntBASIC2.1□□□□□ -2.07
SF3A1Q15459 RNU6-1219P-201ENST00000516143 112 ntBASIC2.1□□□□□ -2.07
SF3A1Q15459 RNU6-250P-201ENST00000516958 103 ntBASIC2.1□□□□□ -2.07
SF3A1Q15459 MIR4419B-201ENST00000577260 68 ntBASIC2.1□□□□□ -2.07
SF3A1Q15459 SNORD61-201ENST00000384252 73 ntBASIC2.09□□□□□ -2.07
SF3A1Q15459 U8.13-201ENST00000390842 128 ntBASIC2.09□□□□□ -2.07
SF3A1Q15459 SNORA26.9-201ENST00000391322 122 ntBASIC2.09□□□□□ -2.07
SF3A1Q15459 AC108059.2-201ENST00000434626 151 ntBASIC2.09□□□□□ -2.07
SF3A1Q15459 RPL39P39-201ENST00000455840 151 ntBASIC2.09□□□□□ -2.07
SF3A1Q15459 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.09□□□□□ -2.07
SF3A1Q15459 SNORA74.3-201ENST00000517108 154 ntBASIC2.09□□□□□ -2.07
SF3A1Q15459 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
SF3A1Q15459 RNU6-643P-201ENST00000384018 107 ntBASIC2.08□□□□□ -2.08
SF3A1Q15459 U8.17-201ENST00000391292 132 ntBASIC2.08□□□□□ -2.08
SF3A1Q15459 RNU4-43P-201ENST00000410628 137 ntBASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms