Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC3.03□□□□□ -1.92
MSX1P28360 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.02□□□□□ -1.93
MSX1P28360 RNA5SP374-201ENST00000362939 125 ntBASIC3.02□□□□□ -1.93
MSX1P28360 RNU6-461P-201ENST00000364195 107 ntBASIC3.02□□□□□ -1.93
MSX1P28360 RNU6-805P-201ENST00000365643 106 ntBASIC3.02□□□□□ -1.93
MSX1P28360 UBE2DNL-203ENST00000474922 222 ntBASIC3.02□□□□□ -1.93
MSX1P28360 RNA5SP385-201ENST00000515947 110 ntBASIC3.02□□□□□ -1.93
MSX1P28360 SNORA31.10-201ENST00000516482 106 ntBASIC3.02□□□□□ -1.93
MSX1P28360 MIR2276-201ENST00000516886 89 ntBASIC3.02□□□□□ -1.93
MSX1P28360 U4atac.1-201ENST00000618345 95 ntBASIC3.02□□□□□ -1.93
MSX1P28360 AC022513.1-201ENST00000624512 117 ntBASIC3.02□□□□□ -1.93
MSX1P28360 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
MSX1P28360 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.02□□□□□ -1.93
MSX1P28360 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC3.01□□□□□ -1.93
MSX1P28360 SNORA22.1-201ENST00000362701 134 ntBASIC3.01□□□□□ -1.93
MSX1P28360 RNU6-833P-201ENST00000363486 107 ntBASIC3.01□□□□□ -1.93
MSX1P28360 SNORA1.2-201ENST00000365189 134 ntBASIC3.01□□□□□ -1.93
MSX1P28360 SNORA70.7-201ENST00000384159 133 ntBASIC3.01□□□□□ -1.93
MSX1P28360 Y_RNA.470-201ENST00000384307 117 ntBASIC3.01□□□□□ -1.93
MSX1P28360 RNU6-279P-201ENST00000391297 101 ntBASIC3.01□□□□□ -1.93
MSX1P28360 RNU6-521P-201ENST00000516663 105 ntBASIC3.01□□□□□ -1.93
MSX1P28360 RNA5SP33-201ENST00000516687 98 ntBASIC3.01□□□□□ -1.93
MSX1P28360 SNORA31.26-201ENST00000517250 137 ntBASIC3.01□□□□□ -1.93
MSX1P28360 MIR4666B-201ENST00000578142 81 ntBASIC3.01□□□□□ -1.93
MSX1P28360 MIR548AE2-201ENST00000583456 67 ntBASIC3.01□□□□□ -1.93
MSX1P28360 MIR4506-201ENST00000584693 77 ntBASIC3.01□□□□□ -1.93
MSX1P28360 AC096720.1-201ENST00000604441 183 ntBASIC3.01□□□□□ -1.93
MSX1P28360 AC103810.6-201ENST00000606708 136 ntBASIC3.01□□□□□ -1.93
MSX1P28360 AC073476.4-201ENST00000628409 72 ntBASIC3.01□□□□□ -1.93
MSX1P28360 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
MSX1P28360 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.01□□□□□ -1.93
MSX1P28360 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.01□□□□□ -1.93
MSX1P28360 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
MSX1P28360 Y_RNA.221-201ENST00000364248 96 ntBASIC3□□□□□ -1.93
MSX1P28360 RNU6-219P-201ENST00000364728 107 ntBASIC3□□□□□ -1.93
MSX1P28360 Y_RNA.467-201ENST00000384297 102 ntBASIC3□□□□□ -1.93
MSX1P28360 RN7SKP192-201ENST00000411291 327 ntBASIC3□□□□□ -1.93
MSX1P28360 CST9LP2-201ENST00000437612 320 ntBASIC3□□□□□ -1.93
MSX1P28360 AC069257.2-201ENST00000441819 155 ntBASIC3□□□□□ -1.93
MSX1P28360 RNU7-171P-201ENST00000459581 62 ntBASIC3□□□□□ -1.93
MSX1P28360 RNU6-267P-201ENST00000516714 103 ntBASIC3□□□□□ -1.93
MSX1P28360 AL162274.2-201ENST00000614406 332 ntBASIC3□□□□□ -1.93
MSX1P28360 MIR6841-201ENST00000637129 72 ntBASIC3□□□□□ -1.93
MSX1P28360 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3□□□□□ -1.93
MSX1P28360 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
MSX1P28360 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3□□□□□ -1.93
MSX1P28360 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
MSX1P28360 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.99□□□□□ -1.93
MSX1P28360 RNU6-1313P-201ENST00000362622 102 ntBASIC2.99□□□□□ -1.93
MSX1P28360 RNU6-1019P-201ENST00000364424 107 ntBASIC2.99□□□□□ -1.93
MSX1P28360 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
MSX1P28360 U8.16-201ENST00000391279 133 ntBASIC2.99□□□□□ -1.93
MSX1P28360 RNA5SP261-201ENST00000410536 106 ntBASIC2.99□□□□□ -1.93
MSX1P28360 RNU2-40P-201ENST00000410833 196 ntBASIC2.99□□□□□ -1.93
MSX1P28360 AC104332.2-201ENST00000429959 156 ntBASIC2.99□□□□□ -1.93
MSX1P28360 MIR1270-201ENST00000459320 83 ntBASIC2.99□□□□□ -1.93
MSX1P28360 RN7SL442P-201ENST00000473804 320 ntBASIC2.99□□□□□ -1.93
MSX1P28360 EIF4BP1-201ENST00000554881 351 ntBASIC2.99□□□□□ -1.93
MSX1P28360 AC007336.1-201ENST00000576365 3828 ntBASIC2.99□□□□□ -1.93
MSX1P28360 MIR4439-201ENST00000583746 80 ntBASIC2.99□□□□□ -1.93
MSX1P28360 AC005786.1-201ENST00000588553 154 ntBASIC2.99□□□□□ -1.93
MSX1P28360 AC069114.2-201ENST00000604699 304 ntBASIC2.99□□□□□ -1.93
MSX1P28360 AL512310.12-203ENST00000640543 90 ntBASIC2.99□□□□□ -1.93
MSX1P28360 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
MSX1P28360 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC2.98□□□□□ -1.93
MSX1P28360 Y_RNA.370-201ENST00000365589 108 ntBASIC2.98□□□□□ -1.93
MSX1P28360 AL034345.1-201ENST00000407768 123 ntBASIC2.98□□□□□ -1.93
MSX1P28360 RN7SKP123-201ENST00000410732 291 ntBASIC2.98□□□□□ -1.93
MSX1P28360 RNU4-47P-201ENST00000410876 114 ntBASIC2.98□□□□□ -1.93
MSX1P28360 HMGN1P18-201ENST00000457642 277 ntBASIC2.98□□□□□ -1.93
MSX1P28360 S100A11P2-201ENST00000467589 312 ntBASIC2.98□□□□□ -1.93
MSX1P28360 RNU7-53P-201ENST00000516705 60 ntBASIC2.98□□□□□ -1.93
MSX1P28360 NDUFB9P3-201ENST00000521269 501 ntBASIC2.98□□□□□ -1.93
MSX1P28360 AC006386.2-201ENST00000624491 75 ntBASIC2.98□□□□□ -1.93
MSX1P28360 AC012005.1-201ENST00000624575 75 ntBASIC2.98□□□□□ -1.93
MSX1P28360 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC2.98□□□□□ -1.93
MSX1P28360 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.98□□□□□ -1.93
MSX1P28360 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.98□□□□□ -1.93
MSX1P28360 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.98□□□□□ -1.93
MSX1P28360 AL035425.3-201ENST00000564206 4996 ntBASIC2.97□□□□□ -1.93
MSX1P28360 Y_RNA.510-201ENST00000384511 114 ntBASIC2.97□□□□□ -1.93
MSX1P28360 MIR1289-1-201ENST00000408836 144 ntBASIC2.97□□□□□ -1.93
MSX1P28360 Y_RNA.620-201ENST00000411009 88 ntBASIC2.97□□□□□ -1.93
MSX1P28360 COTL1P1-201ENST00000422309 375 ntBASIC2.97□□□□□ -1.93
MSX1P28360 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.97□□□□□ -1.93
MSX1P28360 AC026271.5-201ENST00000577873 130 ntBASIC2.97□□□□□ -1.93
MSX1P28360 MIR4668-201ENST00000582284 70 ntBASIC2.97□□□□□ -1.93
MSX1P28360 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.97□□□□□ -1.93
MSX1P28360 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
MSX1P28360 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
MSX1P28360 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
MSX1P28360 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC2.97□□□□□ -1.93
MSX1P28360 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
MSX1P28360 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
MSX1P28360 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.96□□□□□ -1.93
MSX1P28360 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.96□□□□□ -1.93
MSX1P28360 RNU1-70P-201ENST00000362618 164 ntBASIC2.96□□□□□ -1.94
MSX1P28360 RNU6-1125P-201ENST00000363601 107 ntBASIC2.96□□□□□ -1.94
MSX1P28360 SNORD116-10-201ENST00000363791 102 ntBASIC2.96□□□□□ -1.94
MSX1P28360 SNORA1.1-201ENST00000364671 133 ntBASIC2.96□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 161.6 ms