Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RNA5SP450-201ENST00000411206 102 ntBASIC1.6□□□□□ -2.15
LMX1BO60663 SNRPGP14-201ENST00000435400 219 ntBASIC1.6□□□□□ -2.15
LMX1BO60663 HSPE1P9-201ENST00000440046 311 ntBASIC1.6□□□□□ -2.15
LMX1BO60663 TMSB4XP3-201ENST00000445144 114 ntBASIC1.6□□□□□ -2.15
LMX1BO60663 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.6□□□□□ -2.15
LMX1BO60663 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.6□□□□□ -2.15
LMX1BO60663 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.6□□□□□ -2.15
LMX1BO60663 MIR548X2-201ENST00000579776 100 ntBASIC1.6□□□□□ -2.15
LMX1BO60663 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.6□□□□□ -2.15
LMX1BO60663 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.6□□□□□ -2.15
LMX1BO60663 AL442644.1-201ENST00000454390 3105 ntBASIC1.6□□□□□ -2.15
LMX1BO60663 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
LMX1BO60663 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.6□□□□□ -2.15
LMX1BO60663 MIR337-201ENST00000362281 93 ntBASIC1.59□□□□□ -2.15
LMX1BO60663 RNU6-112P-201ENST00000363599 104 ntBASIC1.59□□□□□ -2.15
LMX1BO60663 MIR548A2-201ENST00000384956 97 ntBASIC1.59□□□□□ -2.15
LMX1BO60663 RNU6-440P-201ENST00000390882 105 ntBASIC1.59□□□□□ -2.15
LMX1BO60663 Y_RNA.586-201ENST00000391146 98 ntBASIC1.59□□□□□ -2.15
LMX1BO60663 RNU11-5P-201ENST00000391216 129 ntBASIC1.59□□□□□ -2.15
LMX1BO60663 RNU6-257P-201ENST00000410238 98 ntBASIC1.59□□□□□ -2.15
LMX1BO60663 RNU6-588P-201ENST00000410281 105 ntBASIC1.59□□□□□ -2.15
LMX1BO60663 RNA5SP270-201ENST00000411361 118 ntBASIC1.59□□□□□ -2.15
LMX1BO60663 AC245047.3-201ENST00000429428 127 ntBASIC1.59□□□□□ -2.15
LMX1BO60663 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC1.59□□□□□ -2.15
LMX1BO60663 RNA5SP437-201ENST00000517249 129 ntBASIC1.59□□□□□ -2.15
LMX1BO60663 AC007751.1-201ENST00000529260 376 ntBASIC1.59□□□□□ -2.15
LMX1BO60663 MIR4419B-201ENST00000577260 68 ntBASIC1.59□□□□□ -2.15
LMX1BO60663 MIR3646-201ENST00000578301 84 ntBASIC1.59□□□□□ -2.15
LMX1BO60663 AC069114.2-201ENST00000604699 304 ntBASIC1.59□□□□□ -2.15
LMX1BO60663 snoU13.31-201ENST00000607291 104 ntBASIC1.59□□□□□ -2.15
LMX1BO60663 JPX_2.1-201ENST00000614161 69 ntBASIC1.59□□□□□ -2.15
LMX1BO60663 AC132825.6-201ENST00000638861 357 ntBASIC1.59□□□□□ -2.15
LMX1BO60663 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.59□□□□□ -2.16
LMX1BO60663 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
LMX1BO60663 RNA5SP190-201ENST00000365222 118 ntBASIC1.58□□□□□ -2.16
LMX1BO60663 Y_RNA.497-201ENST00000384447 98 ntBASIC1.58□□□□□ -2.16
LMX1BO60663 AL158823.1-201ENST00000418441 478 ntBASIC1.58□□□□□ -2.16
LMX1BO60663 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.58□□□□□ -2.16
LMX1BO60663 AC112693.2-201ENST00000556538 232 ntBASIC1.58□□□□□ -2.16
LMX1BO60663 AL096840.1-201ENST00000603287 93 ntBASIC1.58□□□□□ -2.16
LMX1BO60663 AL627230.6-201ENST00000611129 280 ntBASIC1.58□□□□□ -2.16
LMX1BO60663 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.58□□□□□ -2.16
LMX1BO60663 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.58□□□□□ -2.16
LMX1BO60663 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
LMX1BO60663 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
LMX1BO60663 SNORD48-201ENST00000364953 64 ntBASIC1.57□□□□□ -2.16
LMX1BO60663 SNORD61-201ENST00000384252 73 ntBASIC1.57□□□□□ -2.16
LMX1BO60663 Y_RNA.521-201ENST00000384560 114 ntBASIC1.57□□□□□ -2.16
LMX1BO60663 SNORA20-201ENST00000384662 132 ntBASIC1.57□□□□□ -2.16
LMX1BO60663 MIR1287-201ENST00000408492 90 ntBASIC1.57□□□□□ -2.16
LMX1BO60663 RNA5SP100-201ENST00000410903 110 ntBASIC1.57□□□□□ -2.16
LMX1BO60663 RNA5SP59-201ENST00000410922 110 ntBASIC1.57□□□□□ -2.16
LMX1BO60663 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.57□□□□□ -2.16
LMX1BO60663 SNORA25.12-201ENST00000516202 82 ntBASIC1.57□□□□□ -2.16
LMX1BO60663 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.57□□□□□ -2.16
LMX1BO60663 RNU6-1116P-201ENST00000517269 99 ntBASIC1.57□□□□□ -2.16
LMX1BO60663 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.57□□□□□ -2.16
LMX1BO60663 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.57□□□□□ -2.16
LMX1BO60663 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.57□□□□□ -2.16
LMX1BO60663 MIR6844-201ENST00000637122 62 ntBASIC1.57□□□□□ -2.16
LMX1BO60663 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
LMX1BO60663 AC010332.2-201ENST00000613083 1904 ntBASIC1.56□□□□□ -2.16
LMX1BO60663 Y_RNA.343-201ENST00000365354 112 ntBASIC1.56□□□□□ -2.16
LMX1BO60663 SNORA1-201ENST00000384107 130 ntBASIC1.56□□□□□ -2.16
LMX1BO60663 RNU6-460P-201ENST00000391158 108 ntBASIC1.56□□□□□ -2.16
LMX1BO60663 SNORA75.5-201ENST00000391291 81 ntBASIC1.56□□□□□ -2.16
LMX1BO60663 RNU2-70P-201ENST00000410718 179 ntBASIC1.56□□□□□ -2.16
LMX1BO60663 MLLT10P1-201ENST00000418346 262 ntBASIC1.56□□□□□ -2.16
LMX1BO60663 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.56□□□□□ -2.16
LMX1BO60663 AL606753.1-201ENST00000427435 87 ntBASIC1.56□□□□□ -2.16
LMX1BO60663 MTND4LP9-201ENST00000427694 174 ntBASIC1.56□□□□□ -2.16
LMX1BO60663 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.56□□□□□ -2.16
LMX1BO60663 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.56□□□□□ -2.16
LMX1BO60663 Y_RNA.666-201ENST00000516187 112 ntBASIC1.56□□□□□ -2.16
LMX1BO60663 RNU2-56P-201ENST00000516826 190 ntBASIC1.56□□□□□ -2.16
LMX1BO60663 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
LMX1BO60663 MIR4662B-201ENST00000579498 81 ntBASIC1.56□□□□□ -2.16
LMX1BO60663 AC087685.1-201ENST00000587507 141 ntBASIC1.56□□□□□ -2.16
LMX1BO60663 AP001485.1-201ENST00000604799 199 ntBASIC1.56□□□□□ -2.16
LMX1BO60663 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC1.56□□□□□ -2.16
LMX1BO60663 AC008555.8-201ENST00000623602 2168 ntBASIC1.56□□□□□ -2.16
LMX1BO60663 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
LMX1BO60663 SNORD68-201ENST00000363214 84 ntBASIC1.55□□□□□ -2.16
LMX1BO60663 RNU6-457P-201ENST00000363999 107 ntBASIC1.55□□□□□ -2.16
LMX1BO60663 Y_RNA.542-201ENST00000384641 111 ntBASIC1.55□□□□□ -2.16
LMX1BO60663 MIR9-3-201ENST00000385084 90 ntBASIC1.55□□□□□ -2.16
LMX1BO60663 SNORA17.3-201ENST00000391159 129 ntBASIC1.55□□□□□ -2.16
LMX1BO60663 RNA5SP482-201ENST00000391269 118 ntBASIC1.55□□□□□ -2.16
LMX1BO60663 SNORD13-201ENST00000459299 104 ntBASIC1.55□□□□□ -2.16
LMX1BO60663 AC055731.1-201ENST00000474387 401 ntBASIC1.55□□□□□ -2.16
LMX1BO60663 AC099513.1-201ENST00000490423 301 ntBASIC1.55□□□□□ -2.16
LMX1BO60663 RNU7-28P-201ENST00000516759 62 ntBASIC1.55□□□□□ -2.16
LMX1BO60663 RNU2-60P-201ENST00000517290 128 ntBASIC1.55□□□□□ -2.16
LMX1BO60663 MIR4287-201ENST00000579398 78 ntBASIC1.55□□□□□ -2.16
LMX1BO60663 MIR3683-201ENST00000580847 82 ntBASIC1.55□□□□□ -2.16
LMX1BO60663 AC006441.5-201ENST00000612680 209 ntBASIC1.55□□□□□ -2.16
LMX1BO60663 AC084768.2-201ENST00000622736 221 ntBASIC1.55□□□□□ -2.16
LMX1BO60663 AC245060.5-201ENST00000610778 3293 ntBASIC1.54□□□□□ -2.16
LMX1BO60663 RNU6-888P-201ENST00000363010 101 ntBASIC1.54□□□□□ -2.16
LMX1BO60663 RNU6-268P-201ENST00000364174 107 ntBASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms