Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 RNU6-53P-201ENST00000365367 106 ntBASIC5.59□□□□□ -1.51
MSH5O43196 RNU6-1072P-201ENST00000384703 107 ntBASIC5.59□□□□□ -1.51
MSH5O43196 RNU6-443P-201ENST00000384780 107 ntBASIC5.59□□□□□ -1.51
MSH5O43196 MIR7-3-201ENST00000384898 110 ntBASIC5.59□□□□□ -1.51
MSH5O43196 MIR449B-201ENST00000384995 97 ntBASIC5.59□□□□□ -1.51
MSH5O43196 AC244023.1-201ENST00000426884 112 ntBASIC5.59□□□□□ -1.51
MSH5O43196 AL606490.9-201ENST00000603331 271 ntBASIC5.59□□□□□ -1.51
MSH5O43196 AC242498.1-201ENST00000604134 111 ntBASIC5.59□□□□□ -1.51
MSH5O43196 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.59□□□□□ -1.51
MSH5O43196 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC5.58□□□□□ -1.52
MSH5O43196 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.58□□□□□ -1.52
MSH5O43196 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
MSH5O43196 MIR483-201ENST00000385070 76 ntBASIC5.58□□□□□ -1.52
MSH5O43196 AC093578.1-201ENST00000415219 368 ntBASIC5.58□□□□□ -1.52
MSH5O43196 AL133547.1-201ENST00000448546 220 ntBASIC5.58□□□□□ -1.52
MSH5O43196 RNA5SP519-201ENST00000516480 119 ntBASIC5.58□□□□□ -1.52
MSH5O43196 RNU6-231P-201ENST00000517122 103 ntBASIC5.58□□□□□ -1.52
MSH5O43196 AC091178.1-203ENST00000584586 279 ntBASIC5.58□□□□□ -1.52
MSH5O43196 MIR3657-201ENST00000584818 117 ntBASIC5.58□□□□□ -1.52
MSH5O43196 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC5.58□□□□□ -1.52
MSH5O43196 MIR432-201ENST00000606207 94 ntBASIC5.58□□□□□ -1.52
MSH5O43196 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
MSH5O43196 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
MSH5O43196 AC026523.2-201ENST00000625039 7739 ntBASIC5.57□□□□□ -1.52
MSH5O43196 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
MSH5O43196 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
MSH5O43196 MIR95-201ENST00000385072 81 ntBASIC5.57□□□□□ -1.52
MSH5O43196 SNORA70.19-201ENST00000516717 90 ntBASIC5.57□□□□□ -1.52
MSH5O43196 SNORA48.11-201ENST00000517015 89 ntBASIC5.57□□□□□ -1.52
MSH5O43196 NAMPTP3-201ENST00000569273 224 ntBASIC5.57□□□□□ -1.52
MSH5O43196 MIR5685-201ENST00000579080 79 ntBASIC5.57□□□□□ -1.52
MSH5O43196 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
MSH5O43196 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
MSH5O43196 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
MSH5O43196 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC5.57□□□□□ -1.52
MSH5O43196 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
MSH5O43196 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC5.56□□□□□ -1.52
MSH5O43196 U3.27-201ENST00000391237 200 ntBASIC5.56□□□□□ -1.52
MSH5O43196 MIR1302-7-201ENST00000408841 72 ntBASIC5.56□□□□□ -1.52
MSH5O43196 RN7SL691P-201ENST00000494487 301 ntBASIC5.56□□□□□ -1.52
MSH5O43196 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC5.56□□□□□ -1.52
MSH5O43196 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC5.56□□□□□ -1.52
MSH5O43196 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
MSH5O43196 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
MSH5O43196 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
MSH5O43196 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC5.55□□□□□ -1.52
MSH5O43196 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
MSH5O43196 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
MSH5O43196 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
MSH5O43196 RNU6-247P-201ENST00000362636 107 ntBASIC5.55□□□□□ -1.52
MSH5O43196 RNU1-63P-201ENST00000383902 164 ntBASIC5.55□□□□□ -1.52
MSH5O43196 RNU1-89P-201ENST00000384592 164 ntBASIC5.55□□□□□ -1.52
MSH5O43196 MIR548C-201ENST00000384815 97 ntBASIC5.55□□□□□ -1.52
MSH5O43196 MIR563-201ENST00000385080 79 ntBASIC5.55□□□□□ -1.52
MSH5O43196 SNORD113-2-201ENST00000391082 72 ntBASIC5.55□□□□□ -1.52
MSH5O43196 Z98941.1-201ENST00000407764 100 ntBASIC5.55□□□□□ -1.52
MSH5O43196 CYP2C59P-201ENST00000457790 269 ntBASIC5.55□□□□□ -1.52
MSH5O43196 RNU1-61P-201ENST00000516107 151 ntBASIC5.55□□□□□ -1.52
MSH5O43196 MIR3935-201ENST00000583472 104 ntBASIC5.55□□□□□ -1.52
MSH5O43196 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
MSH5O43196 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
MSH5O43196 RNA5SP252-201ENST00000391131 119 ntBASIC5.54□□□□□ -1.52
MSH5O43196 CYCSP30-201ENST00000546447 172 ntBASIC5.54□□□□□ -1.52
MSH5O43196 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC5.54□□□□□ -1.52
MSH5O43196 AC138207.3-201ENST00000585289 166 ntBASIC5.54□□□□□ -1.52
MSH5O43196 AC012314.7-201ENST00000619693 93 ntBASIC5.54□□□□□ -1.52
MSH5O43196 AC091905.2-201ENST00000623143 306 ntBASIC5.54□□□□□ -1.52
MSH5O43196 TEX41-300ENST00000631048 69 ntTSL 5 BASIC5.54□□□□□ -1.52
MSH5O43196 MIR4251-201ENST00000635819 61 ntBASIC5.54□□□□□ -1.52
MSH5O43196 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
MSH5O43196 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC5.54□□□□□ -1.52
MSH5O43196 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
MSH5O43196 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC5.53□□□□□ -1.52
MSH5O43196 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
MSH5O43196 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC5.53□□□□□ -1.52
MSH5O43196 RNA5SP493-201ENST00000364115 91 ntBASIC5.53□□□□□ -1.52
MSH5O43196 SNORD116.2-201ENST00000391251 93 ntBASIC5.53□□□□□ -1.52
MSH5O43196 SCARNA4.1-201ENST00000628597 123 ntBASIC5.53□□□□□ -1.52
MSH5O43196 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC5.53□□□□□ -1.52
MSH5O43196 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC5.53□□□□□ -1.52
MSH5O43196 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
MSH5O43196 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
MSH5O43196 MIR30D-201ENST00000362283 70 ntBASIC5.52□□□□□ -1.53
MSH5O43196 RNU6-1031P-201ENST00000384773 107 ntBASIC5.52□□□□□ -1.53
MSH5O43196 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
MSH5O43196 RNU7-24P-201ENST00000458867 62 ntBASIC5.52□□□□□ -1.53
MSH5O43196 SNORA40.16-201ENST00000517238 121 ntBASIC5.52□□□□□ -1.53
MSH5O43196 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
MSH5O43196 MAPK10-286ENST00000641208 8747 ntBASIC5.52□□□□□ -1.53
MSH5O43196 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
MSH5O43196 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC5.51□□□□□ -1.53
MSH5O43196 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC5.51□□□□□ -1.53
MSH5O43196 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
MSH5O43196 RNU1-14P-201ENST00000362759 152 ntBASIC5.51□□□□□ -1.53
MSH5O43196 RNA5SP175-201ENST00000364275 119 ntBASIC5.51□□□□□ -1.53
MSH5O43196 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC5.51□□□□□ -1.53
MSH5O43196 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSH5O43196 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC5.5□□□□□ -1.53
MSH5O43196 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
MSH5O43196 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 187.2 ms