Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 RN7SL633P-201ENST00000488974 297 ntBASIC3.09□□□□□ -1.91
USP3Q9Y6I4 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.91
USP3Q9Y6I4 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.92
USP3Q9Y6I4 RNU1-58P-201ENST00000362413 163 ntBASIC3.08□□□□□ -1.92
USP3Q9Y6I4 RNU6-833P-201ENST00000363486 107 ntBASIC3.08□□□□□ -1.92
USP3Q9Y6I4 SNORA1.2-201ENST00000365189 134 ntBASIC3.08□□□□□ -1.92
USP3Q9Y6I4 RNA5SP109-201ENST00000391010 116 ntBASIC3.08□□□□□ -1.92
USP3Q9Y6I4 AL034345.1-201ENST00000407768 123 ntBASIC3.08□□□□□ -1.92
USP3Q9Y6I4 SNORA19.1-201ENST00000410656 129 ntBASIC3.08□□□□□ -1.92
USP3Q9Y6I4 EEF1A1P41-201ENST00000414667 207 ntBASIC3.08□□□□□ -1.92
USP3Q9Y6I4 RPS23P4-201ENST00000487908 423 ntBASIC3.08□□□□□ -1.92
USP3Q9Y6I4 SCARNA23-201ENST00000516060 130 ntBASIC3.08□□□□□ -1.92
USP3Q9Y6I4 RNU6ATAC12P-201ENST00000516542 115 ntBASIC3.08□□□□□ -1.92
USP3Q9Y6I4 snoMBII-202.2-201ENST00000517263 86 ntBASIC3.08□□□□□ -1.92
USP3Q9Y6I4 ZNF861P-201ENST00000588126 639 ntBASIC3.08□□□□□ -1.92
USP3Q9Y6I4 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC3.08□□□□□ -1.92
USP3Q9Y6I4 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
USP3Q9Y6I4 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.08□□□□□ -1.92
USP3Q9Y6I4 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.08□□□□□ -1.92
USP3Q9Y6I4 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
USP3Q9Y6I4 MIRLET7C-201ENST00000362160 84 ntBASIC3.07□□□□□ -1.92
USP3Q9Y6I4 RNU6-525P-201ENST00000363685 104 ntBASIC3.07□□□□□ -1.92
USP3Q9Y6I4 Y_RNA.388-201ENST00000383919 113 ntBASIC3.07□□□□□ -1.92
USP3Q9Y6I4 SNORA70.7-201ENST00000384159 133 ntBASIC3.07□□□□□ -1.92
USP3Q9Y6I4 Y_RNA.466-201ENST00000384294 113 ntBASIC3.07□□□□□ -1.92
USP3Q9Y6I4 Y_RNA.601-201ENST00000410500 113 ntBASIC3.07□□□□□ -1.92
USP3Q9Y6I4 SNX2P2-201ENST00000424553 323 ntBASIC3.07□□□□□ -1.92
USP3Q9Y6I4 AC006483.1-201ENST00000487308 313 ntBASIC3.07□□□□□ -1.92
USP3Q9Y6I4 AC090821.2-201ENST00000523552 176 ntBASIC3.07□□□□□ -1.92
USP3Q9Y6I4 AC107016.2-201ENST00000547968 190 ntBASIC3.07□□□□□ -1.92
USP3Q9Y6I4 EIF4BP1-201ENST00000554881 351 ntBASIC3.07□□□□□ -1.92
USP3Q9Y6I4 AC002984.1-201ENST00000591692 448 ntBASIC3.07□□□□□ -1.92
USP3Q9Y6I4 AC021613.1-201ENST00000623880 111 ntBASIC3.07□□□□□ -1.92
USP3Q9Y6I4 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
USP3Q9Y6I4 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
USP3Q9Y6I4 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.07□□□□□ -1.92
USP3Q9Y6I4 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
USP3Q9Y6I4 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.06□□□□□ -1.92
USP3Q9Y6I4 AC245060.5-201ENST00000610778 3293 ntBASIC3.06□□□□□ -1.92
USP3Q9Y6I4 SNORA25.6-201ENST00000364121 118 ntBASIC3.06□□□□□ -1.92
USP3Q9Y6I4 SNORA9.2-201ENST00000365361 133 ntBASIC3.06□□□□□ -1.92
USP3Q9Y6I4 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
USP3Q9Y6I4 MIR627-201ENST00000384979 97 ntBASIC3.06□□□□□ -1.92
USP3Q9Y6I4 MIR450A2-201ENST00000385022 100 ntBASIC3.06□□□□□ -1.92
USP3Q9Y6I4 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.06□□□□□ -1.92
USP3Q9Y6I4 AL033523.1-201ENST00000605153 153 ntBASIC3.06□□□□□ -1.92
USP3Q9Y6I4 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.06□□□□□ -1.92
USP3Q9Y6I4 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.06□□□□□ -1.92
USP3Q9Y6I4 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC3.05□□□□□ -1.92
USP3Q9Y6I4 RNY3P2-201ENST00000362918 102 ntBASIC3.05□□□□□ -1.92
USP3Q9Y6I4 MIR1267-201ENST00000408723 78 ntBASIC3.05□□□□□ -1.92
USP3Q9Y6I4 AC022018.1-201ENST00000430685 241 ntBASIC3.05□□□□□ -1.92
USP3Q9Y6I4 AC015922.2-201ENST00000435593 184 ntBASIC3.05□□□□□ -1.92
USP3Q9Y6I4 AP003327.1-201ENST00000529684 127 ntBASIC3.05□□□□□ -1.92
USP3Q9Y6I4 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
USP3Q9Y6I4 MIR4694-201ENST00000578534 80 ntBASIC3.05□□□□□ -1.92
USP3Q9Y6I4 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.05□□□□□ -1.92
USP3Q9Y6I4 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
USP3Q9Y6I4 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.04□□□□□ -1.92
USP3Q9Y6I4 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
USP3Q9Y6I4 MIR342-201ENST00000362212 99 ntBASIC3.04□□□□□ -1.92
USP3Q9Y6I4 Y_RNA.96-201ENST00000363092 109 ntBASIC3.04□□□□□ -1.92
USP3Q9Y6I4 SNORA80A-201ENST00000363922 136 ntBASIC3.04□□□□□ -1.92
USP3Q9Y6I4 RNU4-16P-201ENST00000364737 141 ntBASIC3.04□□□□□ -1.92
USP3Q9Y6I4 Y_RNA.531-201ENST00000384589 121 ntBASIC3.04□□□□□ -1.92
USP3Q9Y6I4 RNA5SP261-201ENST00000410536 106 ntBASIC3.04□□□□□ -1.92
USP3Q9Y6I4 AL135938.1-201ENST00000443141 297 ntBASIC3.04□□□□□ -1.92
USP3Q9Y6I4 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC3.04□□□□□ -1.92
USP3Q9Y6I4 SCARNA13-201ENST00000516672 275 ntBASIC3.04□□□□□ -1.92
USP3Q9Y6I4 RPPH1-2P-201ENST00000516688 293 ntBASIC3.04□□□□□ -1.92
USP3Q9Y6I4 AC004812.1-201ENST00000540773 146 ntBASIC3.04□□□□□ -1.92
USP3Q9Y6I4 AC022513.1-201ENST00000624512 117 ntBASIC3.04□□□□□ -1.92
USP3Q9Y6I4 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC3.04□□□□□ -1.92
USP3Q9Y6I4 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.04□□□□□ -1.92
USP3Q9Y6I4 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.04□□□□□ -1.92
USP3Q9Y6I4 AP006437.1-201ENST00000641440 3685 ntBASIC3.04□□□□□ -1.92
USP3Q9Y6I4 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
USP3Q9Y6I4 SNORA4.2-201ENST00000365313 147 ntBASIC3.03□□□□□ -1.92
USP3Q9Y6I4 Y_RNA.342-201ENST00000365352 113 ntBASIC3.03□□□□□ -1.92
USP3Q9Y6I4 AC096949.1-201ENST00000412047 152 ntBASIC3.03□□□□□ -1.92
USP3Q9Y6I4 RPS29P6-201ENST00000438196 145 ntBASIC3.03□□□□□ -1.92
USP3Q9Y6I4 AP004217.1-201ENST00000480579 346 ntBASIC3.03□□□□□ -1.92
USP3Q9Y6I4 RN7SKP12-201ENST00000516275 143 ntBASIC3.03□□□□□ -1.92
USP3Q9Y6I4 MIR3152-201ENST00000579801 74 ntBASIC3.03□□□□□ -1.92
USP3Q9Y6I4 AC087741.2-201ENST00000619415 172 ntBASIC3.03□□□□□ -1.92
USP3Q9Y6I4 AL137790.1-201ENST00000634283 177 ntBASIC3.03□□□□□ -1.92
USP3Q9Y6I4 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
USP3Q9Y6I4 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.03□□□□□ -1.92
USP3Q9Y6I4 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
USP3Q9Y6I4 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.03□□□□□ -1.93
USP3Q9Y6I4 FAM35CP-201ENST00000554755 2470 ntBASIC3.02□□□□□ -1.93
USP3Q9Y6I4 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.02□□□□□ -1.93
USP3Q9Y6I4 RNU6-363P-201ENST00000362895 105 ntBASIC3.02□□□□□ -1.93
USP3Q9Y6I4 RNU6-1099P-201ENST00000363533 107 ntBASIC3.02□□□□□ -1.93
USP3Q9Y6I4 MIR452-201ENST00000385020 85 ntBASIC3.02□□□□□ -1.93
USP3Q9Y6I4 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC3.02□□□□□ -1.93
USP3Q9Y6I4 AC113410.1-201ENST00000505029 247 ntBASIC3.02□□□□□ -1.93
USP3Q9Y6I4 RNA5SP380-201ENST00000517190 98 ntBASIC3.02□□□□□ -1.93
USP3Q9Y6I4 MIR3618-201ENST00000580330 88 ntBASIC3.02□□□□□ -1.93
USP3Q9Y6I4 AC062037.1-201ENST00000605302 128 ntBASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 141.1 ms