Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
CUEDC1Q9NWM3 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CUEDC1Q9NWM3 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
CUEDC1Q9NWM3 RNU7-96P-201ENST00000459535 64 ntBASIC3.3□□□□□ -1.88
CUEDC1Q9NWM3 Y_RNA.659-201ENST00000515994 113 ntBASIC3.3□□□□□ -1.88
CUEDC1Q9NWM3 RNU6-991P-201ENST00000516168 107 ntBASIC3.3□□□□□ -1.88
CUEDC1Q9NWM3 SNORD45.4-201ENST00000516629 73 ntBASIC3.3□□□□□ -1.88
CUEDC1Q9NWM3 IGKV2-26-201ENST00000518305 343 ntBASIC3.3□□□□□ -1.88
CUEDC1Q9NWM3 MIR3126-201ENST00000577443 74 ntBASIC3.3□□□□□ -1.88
CUEDC1Q9NWM3 AC021613.1-201ENST00000623880 111 ntBASIC3.3□□□□□ -1.88
CUEDC1Q9NWM3 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CUEDC1Q9NWM3 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CUEDC1Q9NWM3 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CUEDC1Q9NWM3 Y_RNA.430-201ENST00000384081 110 ntBASIC3.29□□□□□ -1.88
CUEDC1Q9NWM3 Y_RNA.607-201ENST00000410597 98 ntBASIC3.29□□□□□ -1.88
CUEDC1Q9NWM3 SNORA7.5-201ENST00000410672 110 ntBASIC3.29□□□□□ -1.88
CUEDC1Q9NWM3 RN7SL429P-201ENST00000479090 223 ntBASIC3.29□□□□□ -1.88
CUEDC1Q9NWM3 RN7SL489P-201ENST00000486185 223 ntBASIC3.29□□□□□ -1.88
CUEDC1Q9NWM3 RN7SL327P-201ENST00000488659 223 ntBASIC3.29□□□□□ -1.88
CUEDC1Q9NWM3 SNORA70.19-201ENST00000516717 90 ntBASIC3.29□□□□□ -1.88
CUEDC1Q9NWM3 AC024995.1-201ENST00000523014 93 ntBASIC3.29□□□□□ -1.88
CUEDC1Q9NWM3 MIR4658-201ENST00000584344 65 ntBASIC3.29□□□□□ -1.88
CUEDC1Q9NWM3 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.29□□□□□ -1.88
CUEDC1Q9NWM3 RN7SL853P-201ENST00000617250 223 ntBASIC3.29□□□□□ -1.88
CUEDC1Q9NWM3 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.29□□□□□ -1.88
CUEDC1Q9NWM3 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC3.29□□□□□ -1.88
CUEDC1Q9NWM3 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.28□□□□□ -1.88
CUEDC1Q9NWM3 RNU1-109P-201ENST00000383960 147 ntBASIC3.28□□□□□ -1.88
CUEDC1Q9NWM3 SNORA27-201ENST00000384323 126 ntBASIC3.28□□□□□ -1.88
CUEDC1Q9NWM3 SNORA80E-201ENST00000384744 137 ntBASIC3.28□□□□□ -1.88
CUEDC1Q9NWM3 AL109933.2-201ENST00000452651 260 ntBASIC3.28□□□□□ -1.88
CUEDC1Q9NWM3 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC3.28□□□□□ -1.88
CUEDC1Q9NWM3 RNU6-998P-201ENST00000515894 101 ntBASIC3.28□□□□□ -1.88
CUEDC1Q9NWM3 AC026271.5-201ENST00000577873 130 ntBASIC3.28□□□□□ -1.88
CUEDC1Q9NWM3 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.28□□□□□ -1.88
CUEDC1Q9NWM3 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CUEDC1Q9NWM3 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CUEDC1Q9NWM3 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CUEDC1Q9NWM3 Y_RNA.467-201ENST00000384297 102 ntBASIC3.27□□□□□ -1.89
CUEDC1Q9NWM3 MIR592-201ENST00000384959 97 ntBASIC3.27□□□□□ -1.89
CUEDC1Q9NWM3 SNORD77B-201ENST00000391112 67 ntBASIC3.27□□□□□ -1.89
CUEDC1Q9NWM3 RNA5SP482-201ENST00000391269 118 ntBASIC3.27□□□□□ -1.89
CUEDC1Q9NWM3 RNA5SP293-201ENST00000410527 113 ntBASIC3.27□□□□□ -1.89
CUEDC1Q9NWM3 Y_RNA.611-201ENST00000410682 108 ntBASIC3.27□□□□□ -1.89
CUEDC1Q9NWM3 SNX2P2-201ENST00000424553 323 ntBASIC3.27□□□□□ -1.89
CUEDC1Q9NWM3 AC018868.1-201ENST00000491307 315 ntBASIC3.27□□□□□ -1.89
CUEDC1Q9NWM3 RNU6-1006P-201ENST00000516998 103 ntBASIC3.27□□□□□ -1.89
CUEDC1Q9NWM3 EIF4BP1-201ENST00000554881 351 ntBASIC3.27□□□□□ -1.89
CUEDC1Q9NWM3 AL513534.2-201ENST00000603836 250 ntBASIC3.27□□□□□ -1.89
CUEDC1Q9NWM3 CTSLP2-204ENST00000629029 392 ntBASIC3.27□□□□□ -1.89
CUEDC1Q9NWM3 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CUEDC1Q9NWM3 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.27□□□□□ -1.89
CUEDC1Q9NWM3 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CUEDC1Q9NWM3 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
CUEDC1Q9NWM3 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CUEDC1Q9NWM3 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CUEDC1Q9NWM3 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
CUEDC1Q9NWM3 AC245060.5-201ENST00000610778 3293 ntBASIC3.26□□□□□ -1.89
CUEDC1Q9NWM3 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.26□□□□□ -1.89
CUEDC1Q9NWM3 PWAR6-201ENST00000552334 4618 ntBASIC3.26□□□□□ -1.89
CUEDC1Q9NWM3 MIR342-201ENST00000362212 99 ntBASIC3.26□□□□□ -1.89
CUEDC1Q9NWM3 Y_RNA.4-201ENST00000362333 112 ntBASIC3.26□□□□□ -1.89
CUEDC1Q9NWM3 SNORD115-2-201ENST00000362842 82 ntBASIC3.26□□□□□ -1.89
CUEDC1Q9NWM3 SNORD115-20-201ENST00000365099 82 ntBASIC3.26□□□□□ -1.89
CUEDC1Q9NWM3 RNU6-652P-201ENST00000365488 107 ntBASIC3.26□□□□□ -1.89
CUEDC1Q9NWM3 RNU6-805P-201ENST00000365643 106 ntBASIC3.26□□□□□ -1.89
CUEDC1Q9NWM3 SNORD58A-201ENST00000383875 65 ntBASIC3.26□□□□□ -1.89
CUEDC1Q9NWM3 SNORD38C-201ENST00000384381 69 ntBASIC3.26□□□□□ -1.89
CUEDC1Q9NWM3 RNY1P4-201ENST00000384595 115 ntBASIC3.26□□□□□ -1.89
CUEDC1Q9NWM3 RNA5SP323-201ENST00000391094 133 ntBASIC3.26□□□□□ -1.89
CUEDC1Q9NWM3 POLR2J4-204ENST00000418424 324 ntBASIC3.26□□□□□ -1.89
CUEDC1Q9NWM3 COTL1P1-201ENST00000422309 375 ntBASIC3.26□□□□□ -1.89
CUEDC1Q9NWM3 RN7SL442P-201ENST00000473804 320 ntBASIC3.26□□□□□ -1.89
CUEDC1Q9NWM3 RNU6-1041P-201ENST00000516254 102 ntBASIC3.26□□□□□ -1.89
CUEDC1Q9NWM3 RNU7-28P-201ENST00000516759 62 ntBASIC3.26□□□□□ -1.89
CUEDC1Q9NWM3 MIR2276-201ENST00000516886 89 ntBASIC3.26□□□□□ -1.89
CUEDC1Q9NWM3 AL356274.2-201ENST00000624379 3752 ntBASIC3.26□□□□□ -1.89
CUEDC1Q9NWM3 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
CUEDC1Q9NWM3 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.26□□□□□ -1.89
CUEDC1Q9NWM3 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CUEDC1Q9NWM3 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CUEDC1Q9NWM3 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.26□□□□□ -1.89
CUEDC1Q9NWM3 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.25□□□□□ -1.89
CUEDC1Q9NWM3 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC3.25□□□□□ -1.89
CUEDC1Q9NWM3 MIR30E-201ENST00000362104 92 ntBASIC3.25□□□□□ -1.89
CUEDC1Q9NWM3 RNU6-509P-201ENST00000363519 107 ntBASIC3.25□□□□□ -1.89
CUEDC1Q9NWM3 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC3.25□□□□□ -1.89
CUEDC1Q9NWM3 MIR548BB-201ENST00000626714 66 ntBASIC3.25□□□□□ -1.89
CUEDC1Q9NWM3 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
CUEDC1Q9NWM3 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.25□□□□□ -1.89
CUEDC1Q9NWM3 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CUEDC1Q9NWM3 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.24□□□□□ -1.89
CUEDC1Q9NWM3 SNORD115-34-201ENST00000362441 82 ntBASIC3.24□□□□□ -1.89
CUEDC1Q9NWM3 SNORD115-12-201ENST00000362583 82 ntBASIC3.24□□□□□ -1.89
CUEDC1Q9NWM3 RNU6-1313P-201ENST00000362622 102 ntBASIC3.24□□□□□ -1.89
CUEDC1Q9NWM3 SNORD115-29-201ENST00000362834 82 ntBASIC3.24□□□□□ -1.89
CUEDC1Q9NWM3 SNORD115-9-201ENST00000362912 82 ntBASIC3.24□□□□□ -1.89
CUEDC1Q9NWM3 SNORD115-21-201ENST00000362963 81 ntBASIC3.24□□□□□ -1.89
CUEDC1Q9NWM3 SNORD115-14-201ENST00000363090 81 ntBASIC3.24□□□□□ -1.89
CUEDC1Q9NWM3 SNORD115-41-201ENST00000363608 82 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 222.5 ms