Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 SUMO2P12-201ENST00000405924 140 ntBASIC1.92□□□□□ -2.1
USP43Q70EL4 SNORD65B-201ENST00000459126 73 ntBASIC1.92□□□□□ -2.1
USP43Q70EL4 RNU6-437P-201ENST00000459408 95 ntBASIC1.92□□□□□ -2.1
USP43Q70EL4 RNA5SP281-201ENST00000516504 135 ntBASIC1.92□□□□□ -2.1
USP43Q70EL4 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.92□□□□□ -2.1
USP43Q70EL4 Y_RNA.52-201ENST00000362760 96 ntBASIC1.91□□□□□ -2.1
USP43Q70EL4 Y_RNA.634-201ENST00000364811 113 ntBASIC1.91□□□□□ -2.1
USP43Q70EL4 RNU6-1107P-201ENST00000364817 104 ntBASIC1.91□□□□□ -2.1
USP43Q70EL4 RNU6-1131P-201ENST00000364955 107 ntBASIC1.91□□□□□ -2.1
USP43Q70EL4 Y_RNA.346-201ENST00000365385 112 ntBASIC1.91□□□□□ -2.1
USP43Q70EL4 RNU6-117P-201ENST00000365415 107 ntBASIC1.91□□□□□ -2.1
USP43Q70EL4 Y_RNA.432-201ENST00000384087 111 ntBASIC1.91□□□□□ -2.1
USP43Q70EL4 SNORA51.10-201ENST00000384418 136 ntBASIC1.91□□□□□ -2.1
USP43Q70EL4 RNU6-136P-201ENST00000384663 107 ntBASIC1.91□□□□□ -2.1
USP43Q70EL4 SNORD72-201ENST00000390994 80 ntBASIC1.91□□□□□ -2.1
USP43Q70EL4 MIR1289-2-201ENST00000408360 111 ntBASIC1.91□□□□□ -2.1
USP43Q70EL4 RNA5SP270-201ENST00000411361 118 ntBASIC1.91□□□□□ -2.1
USP43Q70EL4 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.91□□□□□ -2.1
USP43Q70EL4 HMGN2P3-201ENST00000433603 273 ntBASIC1.91□□□□□ -2.1
USP43Q70EL4 HMGN2P5-201ENST00000436882 273 ntBASIC1.91□□□□□ -2.1
USP43Q70EL4 HMGN2P32-201ENST00000444648 269 ntBASIC1.91□□□□□ -2.1
USP43Q70EL4 AC010531.2-201ENST00000465012 153 ntBASIC1.91□□□□□ -2.1
USP43Q70EL4 RPS26P55-201ENST00000471178 356 ntBASIC1.91□□□□□ -2.1
USP43Q70EL4 AC010598.1-201ENST00000510378 103 ntBASIC1.91□□□□□ -2.1
USP43Q70EL4 SNORD77.4-201ENST00000516158 81 ntBASIC1.91□□□□□ -2.1
USP43Q70EL4 RNA5SP236-201ENST00000516169 116 ntBASIC1.91□□□□□ -2.1
USP43Q70EL4 RNA5SP153-201ENST00000516498 76 ntBASIC1.91□□□□□ -2.1
USP43Q70EL4 AC005972.2-201ENST00000604690 348 ntBASIC1.91□□□□□ -2.1
USP43Q70EL4 AC062037.1-201ENST00000605302 128 ntBASIC1.91□□□□□ -2.1
USP43Q70EL4 AL022345.2-201ENST00000606307 135 ntBASIC1.91□□□□□ -2.1
USP43Q70EL4 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
USP43Q70EL4 AC009487.4-201ENST00000624969 3585 ntBASIC1.9□□□□□ -2.1
USP43Q70EL4 AL356292.1-201ENST00000283110 373 ntBASIC1.9□□□□□ -2.11
USP43Q70EL4 RNU6-766P-201ENST00000362478 107 ntBASIC1.9□□□□□ -2.11
USP43Q70EL4 Y_RNA.85-201ENST00000363014 111 ntBASIC1.9□□□□□ -2.11
USP43Q70EL4 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
USP43Q70EL4 SNORA26.2-201ENST00000390922 122 ntBASIC1.9□□□□□ -2.11
USP43Q70EL4 RNU2-32P-201ENST00000411193 191 ntBASIC1.9□□□□□ -2.11
USP43Q70EL4 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC1.9□□□□□ -2.11
USP43Q70EL4 RNU6-1299P-201ENST00000516316 100 ntBASIC1.9□□□□□ -2.11
USP43Q70EL4 RNU6-63P-201ENST00000516690 95 ntBASIC1.9□□□□□ -2.11
USP43Q70EL4 RNU6-586P-201ENST00000517265 104 ntBASIC1.9□□□□□ -2.11
USP43Q70EL4 AC025647.1-201ENST00000517879 253 ntBASIC1.9□□□□□ -2.11
USP43Q70EL4 AC007751.1-201ENST00000529260 376 ntBASIC1.9□□□□□ -2.11
USP43Q70EL4 MIR4753-201ENST00000585119 83 ntBASIC1.9□□□□□ -2.11
USP43Q70EL4 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.9□□□□□ -2.11
USP43Q70EL4 AL049861.1-201ENST00000603130 150 ntBASIC1.9□□□□□ -2.11
USP43Q70EL4 AC046143.2-201ENST00000609789 160 ntBASIC1.9□□□□□ -2.11
USP43Q70EL4 U4atac.1-201ENST00000618345 95 ntBASIC1.9□□□□□ -2.11
USP43Q70EL4 MIR6132-201ENST00000622083 109 ntBASIC1.9□□□□□ -2.11
USP43Q70EL4 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.9□□□□□ -2.11
USP43Q70EL4 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.11
USP43Q70EL4 AL596211.1-201ENST00000569873 2277 ntBASIC1.89□□□□□ -2.11
USP43Q70EL4 Y_RNA.66-201ENST00000362862 102 ntBASIC1.89□□□□□ -2.11
USP43Q70EL4 RNU6-271P-201ENST00000363858 105 ntBASIC1.89□□□□□ -2.11
USP43Q70EL4 RNA5SP125-201ENST00000364843 120 ntBASIC1.89□□□□□ -2.11
USP43Q70EL4 SNORD14D-201ENST00000384390 87 ntBASIC1.89□□□□□ -2.11
USP43Q70EL4 RNU6-1235P-201ENST00000384559 107 ntBASIC1.89□□□□□ -2.11
USP43Q70EL4 MIR95-201ENST00000385072 81 ntBASIC1.89□□□□□ -2.11
USP43Q70EL4 SNORA79-201ENST00000408376 140 ntBASIC1.89□□□□□ -2.11
USP43Q70EL4 RNA5SP511-201ENST00000410487 115 ntBASIC1.89□□□□□ -2.11
USP43Q70EL4 RNU6-57P-201ENST00000411348 103 ntBASIC1.89□□□□□ -2.11
USP43Q70EL4 AC016909.1-201ENST00000415916 166 ntBASIC1.89□□□□□ -2.11
USP43Q70EL4 CALM2P4-201ENST00000430810 426 ntBASIC1.89□□□□□ -2.11
USP43Q70EL4 AC016717.1-201ENST00000448918 286 ntBASIC1.89□□□□□ -2.11
USP43Q70EL4 AC245102.2-201ENST00000448956 180 ntBASIC1.89□□□□□ -2.11
USP43Q70EL4 SNORD11-201ENST00000459124 84 ntBASIC1.89□□□□□ -2.11
USP43Q70EL4 RNU6-498P-201ENST00000459468 107 ntBASIC1.89□□□□□ -2.11
USP43Q70EL4 RPL23AP42-201ENST00000471152 471 ntBASIC1.89□□□□□ -2.11
USP43Q70EL4 RPL23AP54-201ENST00000495129 419 ntBASIC1.89□□□□□ -2.11
USP43Q70EL4 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.89□□□□□ -2.11
USP43Q70EL4 RNA5SP200-201ENST00000516360 103 ntBASIC1.89□□□□□ -2.11
USP43Q70EL4 RNU7-116P-201ENST00000516940 62 ntBASIC1.89□□□□□ -2.11
USP43Q70EL4 AC015720.1-201ENST00000565251 277 ntBASIC1.89□□□□□ -2.11
USP43Q70EL4 AC007012.1-201ENST00000567192 175 ntBASIC1.89□□□□□ -2.11
USP43Q70EL4 AC007229.1-201ENST00000590455 412 ntBASIC1.89□□□□□ -2.11
USP43Q70EL4 AL929325.1-201ENST00000603096 117 ntBASIC1.89□□□□□ -2.11
USP43Q70EL4 RNU6-94P-201ENST00000607728 107 ntBASIC1.89□□□□□ -2.11
USP43Q70EL4 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC1.89□□□□□ -2.11
USP43Q70EL4 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.89□□□□□ -2.11
USP43Q70EL4 MIR1248-201ENST00000629190 106 ntBASIC1.89□□□□□ -2.11
USP43Q70EL4 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
USP43Q70EL4 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
USP43Q70EL4 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.89□□□□□ -2.11
USP43Q70EL4 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
USP43Q70EL4 Y_RNA.163-201ENST00000363702 113 ntBASIC1.88□□□□□ -2.11
USP43Q70EL4 RNU4-41P-201ENST00000364426 143 ntBASIC1.88□□□□□ -2.11
USP43Q70EL4 SNORA16B-201ENST00000364674 135 ntBASIC1.88□□□□□ -2.11
USP43Q70EL4 MIR624-201ENST00000385217 97 ntBASIC1.88□□□□□ -2.11
USP43Q70EL4 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.88□□□□□ -2.11
USP43Q70EL4 RNU6-991P-201ENST00000516168 107 ntBASIC1.88□□□□□ -2.11
USP43Q70EL4 RNU6-948P-201ENST00000516374 107 ntBASIC1.88□□□□□ -2.11
USP43Q70EL4 RNU6-638P-201ENST00000516582 104 ntBASIC1.88□□□□□ -2.11
USP43Q70EL4 RNU6-548P-201ENST00000517083 115 ntBASIC1.88□□□□□ -2.11
USP43Q70EL4 AP003327.1-201ENST00000529684 127 ntBASIC1.88□□□□□ -2.11
USP43Q70EL4 AL096840.1-201ENST00000603287 93 ntBASIC1.88□□□□□ -2.11
USP43Q70EL4 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.88□□□□□ -2.11
USP43Q70EL4 uc_338.4-201ENST00000616635 176 ntBASIC1.88□□□□□ -2.11
USP43Q70EL4 AC006435.5-201ENST00000624486 112 ntBASIC1.88□□□□□ -2.11
USP43Q70EL4 Y_RNA.796-201ENST00000364268 102 ntBASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 188.3 ms