Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.1
PTCHD3Q3KNS1 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.9□□□□□ -2.1
PTCHD3Q3KNS1 snoU2-30.1-201ENST00000365012 70 ntBASIC1.9□□□□□ -2.11
PTCHD3Q3KNS1 Y_RNA.336-201ENST00000365307 109 ntBASIC1.9□□□□□ -2.11
PTCHD3Q3KNS1 Y_RNA.432-201ENST00000384087 111 ntBASIC1.9□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-424P-201ENST00000384367 105 ntBASIC1.9□□□□□ -2.11
PTCHD3Q3KNS1 MIR15B-201ENST00000385045 98 ntBASIC1.9□□□□□ -2.11
PTCHD3Q3KNS1 SNORA79-201ENST00000408376 140 ntBASIC1.9□□□□□ -2.11
PTCHD3Q3KNS1 RPL23AP6-201ENST00000446637 472 ntBASIC1.9□□□□□ -2.11
PTCHD3Q3KNS1 MIR4713-201ENST00000582691 75 ntBASIC1.9□□□□□ -2.11
PTCHD3Q3KNS1 Pinc.1-201ENST00000616452 154 ntBASIC1.9□□□□□ -2.11
PTCHD3Q3KNS1 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.9□□□□□ -2.11
PTCHD3Q3KNS1 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-661P-201ENST00000362409 107 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-1084P-201ENST00000362498 107 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 SNORD45.3-201ENST00000363836 72 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 SNORD50B-201ENST00000364995 70 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-484P-201ENST00000384016 107 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 RN7SKP51-201ENST00000410781 304 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-1135P-201ENST00000411083 103 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 PGBD4P5-201ENST00000445958 426 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 RPL23AP42-201ENST00000471152 471 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 CYCTP-201ENST00000504253 315 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-561P-201ENST00000516222 102 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 SNORD45.4-201ENST00000516629 73 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 RNA5SP168-201ENST00000516642 112 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 AC097639.2-201ENST00000603159 172 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 AC021506.2-201ENST00000612354 169 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-833P-201ENST00000363486 107 ntBASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 RNA5SP99-201ENST00000364020 114 ntBASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 Y_RNA.357-201ENST00000365487 109 ntBASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 U8.13-201ENST00000390842 128 ntBASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 U8.16-201ENST00000391279 133 ntBASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 HMGN2P32-201ENST00000444648 269 ntBASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 RNU7-34P-201ENST00000459394 64 ntBASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 AC099513.1-201ENST00000490423 301 ntBASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-197P-201ENST00000516680 100 ntBASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-295P-201ENST00000516901 104 ntBASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-1212P-201ENST00000517023 104 ntBASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 AC120024.3-201ENST00000603167 156 ntBASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 uc_338.20-201ENST00000621563 178 ntBASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 AC092881.1-201ENST00000638218 2733 ntBASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 MIR424-201ENST00000362227 98 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 SNORD14E-201ENST00000364009 85 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 RNU4-84P-201ENST00000364200 139 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-442P-201ENST00000383968 104 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 MIR583-201ENST00000384846 75 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 AC019129.1-201ENST00000403786 261 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-394P-201ENST00000410735 107 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 RNU2-40P-201ENST00000410833 196 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 Y_RNA.622-201ENST00000411091 108 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 AC074198.2-201ENST00000508153 258 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 MRPS17P9-201ENST00000511924 393 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-237P-201ENST00000515985 71 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 RNA5SP364-201ENST00000516938 78 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 MIR4299-201ENST00000577899 72 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 AL627230.6-201ENST00000611129 280 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-1123P-201ENST00000362347 106 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-643P-201ENST00000384018 107 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-163P-201ENST00000384396 106 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 Y_RNA.486-201ENST00000384398 107 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 MIR676-201ENST00000390702 67 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-239P-201ENST00000390990 99 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 SNORA40.18-201ENST00000391200 128 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 AL445685.2-201ENST00000422551 342 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 CALM2P4-201ENST00000430810 426 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 SEPT7P4-201ENST00000437076 306 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 AC107027.2-201ENST00000512197 115 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 RNU7-121P-201ENST00000516604 62 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-548P-201ENST00000517083 115 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 MIR3935-201ENST00000583472 104 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 AC006441.5-201ENST00000612680 209 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 MIR6845-201ENST00000613182 61 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.85□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-414P-201ENST00000363705 104 ntBASIC1.85□□□□□ -2.11
PTCHD3Q3KNS1 Y_RNA.634-201ENST00000364811 113 ntBASIC1.85□□□□□ -2.11
PTCHD3Q3KNS1 MIR194-1-201ENST00000384892 85 ntBASIC1.85□□□□□ -2.11
PTCHD3Q3KNS1 MIR660-201ENST00000385235 97 ntBASIC1.85□□□□□ -2.11
PTCHD3Q3KNS1 Y_RNA.580-201ENST00000391004 95 ntBASIC1.85□□□□□ -2.11
PTCHD3Q3KNS1 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.85□□□□□ -2.11
PTCHD3Q3KNS1 MIR891A-201ENST00000401237 79 ntBASIC1.85□□□□□ -2.11
PTCHD3Q3KNS1 RNU5E-9P-201ENST00000411164 104 ntBASIC1.85□□□□□ -2.11
PTCHD3Q3KNS1 JTBP1-201ENST00000441314 247 ntBASIC1.85□□□□□ -2.11
PTCHD3Q3KNS1 AC114811.1-201ENST00000507207 168 ntBASIC1.85□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-504P-201ENST00000516568 104 ntBASIC1.85□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-365P-201ENST00000517113 106 ntBASIC1.85□□□□□ -2.11
PTCHD3Q3KNS1 AL096840.1-201ENST00000603287 93 ntBASIC1.85□□□□□ -2.11
PTCHD3Q3KNS1 Y_RNA.337-201ENST00000365312 102 ntBASIC1.84□□□□□ -2.11
PTCHD3Q3KNS1 SNORD24-201ENST00000383884 75 ntBASIC1.84□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-1062P-201ENST00000383908 107 ntBASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 201.2 ms