Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 BTF3P4-201ENST00000418852 495 ntBASIC3.09□□□□□ -1.91
MSX1P28360 RNU2-11P-201ENST00000459191 187 ntBASIC3.09□□□□□ -1.91
MSX1P28360 RNU7-113P-201ENST00000459273 62 ntBASIC3.09□□□□□ -1.91
MSX1P28360 RPL23AP94-201ENST00000512518 302 ntBASIC3.09□□□□□ -1.91
MSX1P28360 IGLV3-17-201ENST00000519099 244 ntBASIC3.09□□□□□ -1.91
MSX1P28360 SNORA28-201ENST00000606769 126 ntBASIC3.09□□□□□ -1.91
MSX1P28360 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
MSX1P28360 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
MSX1P28360 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
MSX1P28360 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.08□□□□□ -1.92
MSX1P28360 MIRLET7C-201ENST00000362160 84 ntBASIC3.08□□□□□ -1.92
MSX1P28360 Y_RNA.377-201ENST00000365644 108 ntBASIC3.08□□□□□ -1.92
MSX1P28360 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
MSX1P28360 AL135938.1-201ENST00000443141 297 ntBASIC3.08□□□□□ -1.92
MSX1P28360 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.08□□□□□ -1.92
MSX1P28360 RPL23AP63-201ENST00000498752 471 ntBASIC3.08□□□□□ -1.92
MSX1P28360 AC091826.1-201ENST00000514065 313 ntBASIC3.08□□□□□ -1.92
MSX1P28360 MIR3169-201ENST00000578032 83 ntBASIC3.08□□□□□ -1.92
MSX1P28360 MIR4513-201ENST00000581077 86 ntBASIC3.08□□□□□ -1.92
MSX1P28360 MIR3124-201ENST00000582636 67 ntBASIC3.08□□□□□ -1.92
MSX1P28360 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC3.08□□□□□ -1.92
MSX1P28360 MIR8054-201ENST00000620877 86 ntBASIC3.08□□□□□ -1.92
MSX1P28360 MIR6852-201ENST00000621699 66 ntBASIC3.08□□□□□ -1.92
MSX1P28360 AC093010.3-201ENST00000570269 15214 ntBASIC3.08□□□□□ -1.92
MSX1P28360 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.07□□□□□ -1.92
MSX1P28360 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
MSX1P28360 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
MSX1P28360 Y_RNA.171-201ENST00000363760 102 ntBASIC3.07□□□□□ -1.92
MSX1P28360 SNORD116-22-201ENST00000384430 92 ntBASIC3.07□□□□□ -1.92
MSX1P28360 SNORA11.4-201ENST00000408823 129 ntBASIC3.07□□□□□ -1.92
MSX1P28360 AC015922.2-201ENST00000435593 184 ntBASIC3.07□□□□□ -1.92
MSX1P28360 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC3.07□□□□□ -1.92
MSX1P28360 MIR4325-201ENST00000583049 90 ntBASIC3.07□□□□□ -1.92
MSX1P28360 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.07□□□□□ -1.92
MSX1P28360 AC091304.10-201ENST00000641554 121 ntBASIC3.07□□□□□ -1.92
MSX1P28360 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.07□□□□□ -1.92
MSX1P28360 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
MSX1P28360 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.07□□□□□ -1.92
MSX1P28360 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
MSX1P28360 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.06□□□□□ -1.92
MSX1P28360 SNORD115-2-201ENST00000362842 82 ntBASIC3.06□□□□□ -1.92
MSX1P28360 Y_RNA.95-201ENST00000363079 95 ntBASIC3.06□□□□□ -1.92
MSX1P28360 Y_RNA.190-201ENST00000363964 101 ntBASIC3.06□□□□□ -1.92
MSX1P28360 SNORD115-20-201ENST00000365099 82 ntBASIC3.06□□□□□ -1.92
MSX1P28360 Y_RNA.500-201ENST00000384466 111 ntBASIC3.06□□□□□ -1.92
MSX1P28360 RNU6-1319P-201ENST00000390855 104 ntBASIC3.06□□□□□ -1.92
MSX1P28360 RNU6-747P-201ENST00000390928 104 ntBASIC3.06□□□□□ -1.92
MSX1P28360 RNU6-241P-201ENST00000391148 104 ntBASIC3.06□□□□□ -1.92
MSX1P28360 MIR1267-201ENST00000408723 78 ntBASIC3.06□□□□□ -1.92
MSX1P28360 RNU6-402P-201ENST00000410678 103 ntBASIC3.06□□□□□ -1.92
MSX1P28360 RNU6-177P-201ENST00000411257 104 ntBASIC3.06□□□□□ -1.92
MSX1P28360 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC3.06□□□□□ -1.92
MSX1P28360 RNU6-1018P-201ENST00000516577 106 ntBASIC3.06□□□□□ -1.92
MSX1P28360 Y_RNA.705-201ENST00000516862 110 ntBASIC3.06□□□□□ -1.92
MSX1P28360 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
MSX1P28360 AC096644.4-201ENST00000563417 2912 ntBASIC3.06□□□□□ -1.92
MSX1P28360 MIR5680-201ENST00000577577 84 ntBASIC3.06□□□□□ -1.92
MSX1P28360 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.06□□□□□ -1.92
MSX1P28360 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
MSX1P28360 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
MSX1P28360 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
MSX1P28360 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.05□□□□□ -1.92
MSX1P28360 AL442644.1-201ENST00000454390 3105 ntBASIC3.05□□□□□ -1.92
MSX1P28360 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
MSX1P28360 RNU6-23P-201ENST00000363283 107 ntBASIC3.05□□□□□ -1.92
MSX1P28360 SNORD21-201ENST00000383953 95 ntBASIC3.05□□□□□ -1.92
MSX1P28360 SNORD77B-201ENST00000391112 67 ntBASIC3.05□□□□□ -1.92
MSX1P28360 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC3.05□□□□□ -1.92
MSX1P28360 UBL5P3-201ENST00000475112 231 ntBASIC3.05□□□□□ -1.92
MSX1P28360 RPPH1-2P-201ENST00000516688 293 ntBASIC3.05□□□□□ -1.92
MSX1P28360 RNU7-181P-201ENST00000517234 74 ntBASIC3.05□□□□□ -1.92
MSX1P28360 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.05□□□□□ -1.92
MSX1P28360 MIR3152-201ENST00000579801 74 ntBASIC3.05□□□□□ -1.92
MSX1P28360 MIR3616-201ENST00000584070 92 ntBASIC3.05□□□□□ -1.92
MSX1P28360 MIR4276-201ENST00000584832 70 ntBASIC3.05□□□□□ -1.92
MSX1P28360 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC3.05□□□□□ -1.92
MSX1P28360 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC3.05□□□□□ -1.92
MSX1P28360 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
MSX1P28360 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
MSX1P28360 MIR30E-201ENST00000362104 92 ntBASIC3.04□□□□□ -1.92
MSX1P28360 Y_RNA.244-201ENST00000364484 109 ntBASIC3.04□□□□□ -1.92
MSX1P28360 SNORD115-35-201ENST00000365122 82 ntBASIC3.04□□□□□ -1.92
MSX1P28360 RNU6-979P-201ENST00000383896 107 ntBASIC3.04□□□□□ -1.92
MSX1P28360 RNU6-787P-201ENST00000384032 107 ntBASIC3.04□□□□□ -1.92
MSX1P28360 RNU6-1201P-201ENST00000384227 107 ntBASIC3.04□□□□□ -1.92
MSX1P28360 RNU6-616P-201ENST00000384353 107 ntBASIC3.04□□□□□ -1.92
MSX1P28360 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.04□□□□□ -1.92
MSX1P28360 RNA5SP293-201ENST00000410527 113 ntBASIC3.04□□□□□ -1.92
MSX1P28360 RNU6-887P-201ENST00000410660 100 ntBASIC3.04□□□□□ -1.92
MSX1P28360 RNU7-45P-201ENST00000459460 63 ntBASIC3.04□□□□□ -1.92
MSX1P28360 Y_RNA.659-201ENST00000515994 113 ntBASIC3.04□□□□□ -1.92
MSX1P28360 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.04□□□□□ -1.92
MSX1P28360 RNU6-1258P-201ENST00000516911 111 ntBASIC3.04□□□□□ -1.92
MSX1P28360 MIR5004-201ENST00000579078 107 ntBASIC3.04□□□□□ -1.92
MSX1P28360 MIR5588-201ENST00000581890 63 ntBASIC3.04□□□□□ -1.92
MSX1P28360 uc_338.1-201ENST00000612113 180 ntBASIC3.04□□□□□ -1.92
MSX1P28360 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
MSX1P28360 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.04□□□□□ -1.92
MSX1P28360 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.03□□□□□ -1.92
MSX1P28360 AL355596.1-201ENST00000565399 3996 ntBASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 180.1 ms