Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 MIR3186-201ENST00000577404 85 ntBASIC3.6□□□□□ -1.83
PCDHB3Q9Y5E6 MIR4738-201ENST00000579134 87 ntBASIC3.6□□□□□ -1.83
PCDHB3Q9Y5E6 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.6□□□□□ -1.83
PCDHB3Q9Y5E6 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
PCDHB3Q9Y5E6 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.6□□□□□ -1.83
PCDHB3Q9Y5E6 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
PCDHB3Q9Y5E6 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
PCDHB3Q9Y5E6 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.59□□□□□ -1.83
PCDHB3Q9Y5E6 MIRLET7C-201ENST00000362160 84 ntBASIC3.59□□□□□ -1.83
PCDHB3Q9Y5E6 SNORD38.1-201ENST00000363863 68 ntBASIC3.59□□□□□ -1.83
PCDHB3Q9Y5E6 SNORA26.6-201ENST00000391256 115 ntBASIC3.59□□□□□ -1.83
PCDHB3Q9Y5E6 AL161932.1-201ENST00000437408 146 ntBASIC3.59□□□□□ -1.83
PCDHB3Q9Y5E6 STAG3L5P-204ENST00000443759 179 ntBASIC3.59□□□□□ -1.83
PCDHB3Q9Y5E6 AC104619.4-201ENST00000510773 249 ntBASIC3.59□□□□□ -1.83
PCDHB3Q9Y5E6 RNVU1-4-201ENST00000612985 164 ntBASIC3.59□□□□□ -1.83
PCDHB3Q9Y5E6 AC005336.3-201ENST00000623833 2679 ntBASIC3.59□□□□□ -1.83
PCDHB3Q9Y5E6 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.59□□□□□ -1.84
PCDHB3Q9Y5E6 MAPK10-362ENST00000641864 4484 ntBASIC3.59□□□□□ -1.84
PCDHB3Q9Y5E6 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
PCDHB3Q9Y5E6 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
PCDHB3Q9Y5E6 MAPK10-322ENST00000641485 4530 ntBASIC3.58□□□□□ -1.84
PCDHB3Q9Y5E6 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
PCDHB3Q9Y5E6 MIR491-201ENST00000384877 84 ntBASIC3.58□□□□□ -1.84
PCDHB3Q9Y5E6 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.58□□□□□ -1.84
PCDHB3Q9Y5E6 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.58□□□□□ -1.84
PCDHB3Q9Y5E6 AC093729.1-201ENST00000513074 128 ntBASIC3.58□□□□□ -1.84
PCDHB3Q9Y5E6 RNU7-2P-201ENST00000516096 62 ntBASIC3.58□□□□□ -1.84
PCDHB3Q9Y5E6 RNA5SP208-201ENST00000516156 78 ntBASIC3.58□□□□□ -1.84
PCDHB3Q9Y5E6 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.58□□□□□ -1.84
PCDHB3Q9Y5E6 AC027279.3-201ENST00000625055 122 ntBASIC3.58□□□□□ -1.84
PCDHB3Q9Y5E6 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.58□□□□□ -1.84
PCDHB3Q9Y5E6 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
PCDHB3Q9Y5E6 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
PCDHB3Q9Y5E6 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.57□□□□□ -1.84
PCDHB3Q9Y5E6 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PCDHB3Q9Y5E6 Y_RNA.99-201ENST00000363138 105 ntBASIC3.57□□□□□ -1.84
PCDHB3Q9Y5E6 RNU6-1244P-201ENST00000363614 108 ntBASIC3.57□□□□□ -1.84
PCDHB3Q9Y5E6 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PCDHB3Q9Y5E6 MIR519C-201ENST00000385053 87 ntBASIC3.57□□□□□ -1.84
PCDHB3Q9Y5E6 RNA5SP109-201ENST00000391010 116 ntBASIC3.57□□□□□ -1.84
PCDHB3Q9Y5E6 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC3.57□□□□□ -1.84
PCDHB3Q9Y5E6 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.57□□□□□ -1.84
PCDHB3Q9Y5E6 RN7SL293P-201ENST00000481765 281 ntBASIC3.57□□□□□ -1.84
PCDHB3Q9Y5E6 AC018868.1-201ENST00000491307 315 ntBASIC3.57□□□□□ -1.84
PCDHB3Q9Y5E6 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.57□□□□□ -1.84
PCDHB3Q9Y5E6 SNORA62.6-201ENST00000606322 83 ntBASIC3.57□□□□□ -1.84
PCDHB3Q9Y5E6 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.57□□□□□ -1.84
PCDHB3Q9Y5E6 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
PCDHB3Q9Y5E6 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC3.57□□□□□ -1.84
PCDHB3Q9Y5E6 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
PCDHB3Q9Y5E6 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.56□□□□□ -1.84
PCDHB3Q9Y5E6 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
PCDHB3Q9Y5E6 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
PCDHB3Q9Y5E6 RPL31P63-201ENST00000422565 375 ntBASIC3.56□□□□□ -1.84
PCDHB3Q9Y5E6 AC006539.3-201ENST00000454258 129 ntBASIC3.56□□□□□ -1.84
PCDHB3Q9Y5E6 SNORD105B-201ENST00000458770 79 ntBASIC3.56□□□□□ -1.84
PCDHB3Q9Y5E6 AL355297.2-201ENST00000604792 129 ntBASIC3.56□□□□□ -1.84
PCDHB3Q9Y5E6 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC3.56□□□□□ -1.84
PCDHB3Q9Y5E6 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.56□□□□□ -1.84
PCDHB3Q9Y5E6 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.56□□□□□ -1.84
PCDHB3Q9Y5E6 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.56□□□□□ -1.84
PCDHB3Q9Y5E6 RNU6-160P-201ENST00000384591 107 ntBASIC3.55□□□□□ -1.84
PCDHB3Q9Y5E6 Y_RNA.545-201ENST00000384652 105 ntBASIC3.55□□□□□ -1.84
PCDHB3Q9Y5E6 MIR183-201ENST00000384958 110 ntBASIC3.55□□□□□ -1.84
PCDHB3Q9Y5E6 MIR184-201ENST00000384962 84 ntBASIC3.55□□□□□ -1.84
PCDHB3Q9Y5E6 MIR561-201ENST00000385216 97 ntBASIC3.55□□□□□ -1.84
PCDHB3Q9Y5E6 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
PCDHB3Q9Y5E6 RNA5SP424-201ENST00000390988 115 ntBASIC3.55□□□□□ -1.84
PCDHB3Q9Y5E6 RNU6-1307P-201ENST00000391012 103 ntBASIC3.55□□□□□ -1.84
PCDHB3Q9Y5E6 NDUFB4P4-201ENST00000404822 243 ntBASIC3.55□□□□□ -1.84
PCDHB3Q9Y5E6 RNA5SP261-201ENST00000410536 106 ntBASIC3.55□□□□□ -1.84
PCDHB3Q9Y5E6 RNU6-1190P-201ENST00000410811 104 ntBASIC3.55□□□□□ -1.84
PCDHB3Q9Y5E6 ATP5A1P2-201ENST00000412323 255 ntBASIC3.55□□□□□ -1.84
PCDHB3Q9Y5E6 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.55□□□□□ -1.84
PCDHB3Q9Y5E6 AC006989.1-201ENST00000427212 131 ntBASIC3.55□□□□□ -1.84
PCDHB3Q9Y5E6 AC007536.1-201ENST00000533382 349 ntBASIC3.55□□□□□ -1.84
PCDHB3Q9Y5E6 MIR4425-201ENST00000580572 84 ntBASIC3.55□□□□□ -1.84
PCDHB3Q9Y5E6 MIR6717-201ENST00000622747 73 ntBASIC3.55□□□□□ -1.84
PCDHB3Q9Y5E6 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.55□□□□□ -1.84
PCDHB3Q9Y5E6 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
PCDHB3Q9Y5E6 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
PCDHB3Q9Y5E6 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
PCDHB3Q9Y5E6 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.55□□□□□ -1.84
PCDHB3Q9Y5E6 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
PCDHB3Q9Y5E6 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.54□□□□□ -1.84
PCDHB3Q9Y5E6 SNORA70.7-201ENST00000384159 133 ntBASIC3.54□□□□□ -1.84
PCDHB3Q9Y5E6 RNU6-613P-201ENST00000410412 108 ntBASIC3.54□□□□□ -1.84
PCDHB3Q9Y5E6 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.54□□□□□ -1.84
PCDHB3Q9Y5E6 RNU7-53P-201ENST00000516705 60 ntBASIC3.54□□□□□ -1.84
PCDHB3Q9Y5E6 RNU6-958P-201ENST00000516995 106 ntBASIC3.54□□□□□ -1.84
PCDHB3Q9Y5E6 DNAJC19P9-201ENST00000555084 351 ntBASIC3.54□□□□□ -1.84
PCDHB3Q9Y5E6 AC140658.3-201ENST00000567603 271 ntBASIC3.54□□□□□ -1.84
PCDHB3Q9Y5E6 U7.4-201ENST00000614961 63 ntBASIC3.54□□□□□ -1.84
PCDHB3Q9Y5E6 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
PCDHB3Q9Y5E6 AC007336.1-201ENST00000576365 3828 ntBASIC3.53□□□□□ -1.84
PCDHB3Q9Y5E6 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
PCDHB3Q9Y5E6 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.53□□□□□ -1.84
PCDHB3Q9Y5E6 RNA5SP50-201ENST00000363731 107 ntBASIC3.53□□□□□ -1.84
PCDHB3Q9Y5E6 RNA5SP139-201ENST00000364340 117 ntBASIC3.53□□□□□ -1.84
PCDHB3Q9Y5E6 RNA5SP51-201ENST00000364750 119 ntBASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms