Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 RNU1-117P-201ENST00000517041 158 ntBASIC3.5□□□□□ -1.85
COL17A1Q9UMD9 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC3.5□□□□□ -1.85
COL17A1Q9UMD9 MIR5092-201ENST00000583139 88 ntBASIC3.5□□□□□ -1.85
COL17A1Q9UMD9 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
COL17A1Q9UMD9 RNU4-15P-201ENST00000362613 141 ntBASIC3.49□□□□□ -1.85
COL17A1Q9UMD9 Y_RNA.361-201ENST00000365515 120 ntBASIC3.49□□□□□ -1.85
COL17A1Q9UMD9 DYNLT3P1-201ENST00000378574 347 ntBASIC3.49□□□□□ -1.85
COL17A1Q9UMD9 SNORA18.2-201ENST00000383865 132 ntBASIC3.49□□□□□ -1.85
COL17A1Q9UMD9 SNORD21-201ENST00000383953 95 ntBASIC3.49□□□□□ -1.85
COL17A1Q9UMD9 MIR624-201ENST00000385217 97 ntBASIC3.49□□□□□ -1.85
COL17A1Q9UMD9 RNA5SP496-201ENST00000391240 109 ntBASIC3.49□□□□□ -1.85
COL17A1Q9UMD9 RNU6-402P-201ENST00000410678 103 ntBASIC3.49□□□□□ -1.85
COL17A1Q9UMD9 RNA5SP127-201ENST00000411051 133 ntBASIC3.49□□□□□ -1.85
COL17A1Q9UMD9 AC104389.3-201ENST00000445629 235 ntBASIC3.49□□□□□ -1.85
COL17A1Q9UMD9 AC112771.1-201ENST00000463581 102 ntBASIC3.49□□□□□ -1.85
COL17A1Q9UMD9 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL17A1Q9UMD9 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL17A1Q9UMD9 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL17A1Q9UMD9 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
COL17A1Q9UMD9 U3.8-201ENST00000363675 217 ntBASIC3.48□□□□□ -1.85
COL17A1Q9UMD9 AC092427.1-202ENST00000430569 476 ntBASIC3.48□□□□□ -1.85
COL17A1Q9UMD9 RNU7-61P-201ENST00000515897 61 ntBASIC3.48□□□□□ -1.85
COL17A1Q9UMD9 SCARNA23-201ENST00000516060 130 ntBASIC3.48□□□□□ -1.85
COL17A1Q9UMD9 RNA5SP236-201ENST00000516169 116 ntBASIC3.48□□□□□ -1.85
COL17A1Q9UMD9 RNU6-830P-201ENST00000516353 107 ntBASIC3.48□□□□□ -1.85
COL17A1Q9UMD9 RNA5SP153-201ENST00000516498 76 ntBASIC3.48□□□□□ -1.85
COL17A1Q9UMD9 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC3.48□□□□□ -1.85
COL17A1Q9UMD9 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
COL17A1Q9UMD9 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.48□□□□□ -1.85
COL17A1Q9UMD9 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
COL17A1Q9UMD9 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL17A1Q9UMD9 RNY3P2-201ENST00000362918 102 ntBASIC3.47□□□□□ -1.85
COL17A1Q9UMD9 Y_RNA.198-201ENST00000364013 98 ntBASIC3.47□□□□□ -1.85
COL17A1Q9UMD9 MIR767-201ENST00000390228 109 ntBASIC3.47□□□□□ -1.85
COL17A1Q9UMD9 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
COL17A1Q9UMD9 snoU13.18-201ENST00000459483 104 ntBASIC3.47□□□□□ -1.85
COL17A1Q9UMD9 RPL23AP54-201ENST00000495129 419 ntBASIC3.47□□□□□ -1.85
COL17A1Q9UMD9 DEFB131E-201ENST00000532329 154 ntBASIC3.47□□□□□ -1.85
COL17A1Q9UMD9 AC008739.2-201ENST00000597006 317 ntBASIC3.47□□□□□ -1.85
COL17A1Q9UMD9 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.47□□□□□ -1.85
COL17A1Q9UMD9 AP003357.1-201ENST00000604497 148 ntBASIC3.47□□□□□ -1.85
COL17A1Q9UMD9 AL021707.8-201ENST00000609428 183 ntBASIC3.47□□□□□ -1.85
COL17A1Q9UMD9 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
COL17A1Q9UMD9 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.47□□□□□ -1.85
COL17A1Q9UMD9 Y_RNA.344-201ENST00000365381 112 ntBASIC3.47□□□□□ -1.85
COL17A1Q9UMD9 RNU6-652P-201ENST00000365488 107 ntBASIC3.47□□□□□ -1.85
COL17A1Q9UMD9 Y_RNA.565-201ENST00000384719 101 ntBASIC3.47□□□□□ -1.85
COL17A1Q9UMD9 EIF4EP4-201ENST00000424916 578 ntBASIC3.47□□□□□ -1.85
COL17A1Q9UMD9 RNU6-437P-201ENST00000459408 95 ntBASIC3.47□□□□□ -1.85
COL17A1Q9UMD9 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC3.47□□□□□ -1.85
COL17A1Q9UMD9 U7.3-201ENST00000616123 62 ntBASIC3.47□□□□□ -1.85
COL17A1Q9UMD9 Six3os1_7.1-201ENST00000621512 201 ntBASIC3.47□□□□□ -1.85
COL17A1Q9UMD9 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL17A1Q9UMD9 AC103988.1-201ENST00000566382 2177 ntBASIC3.46□□□□□ -1.86
COL17A1Q9UMD9 RNU6-418P-201ENST00000384035 107 ntBASIC3.46□□□□□ -1.86
COL17A1Q9UMD9 SNORD116-13-201ENST00000384408 92 ntBASIC3.46□□□□□ -1.86
COL17A1Q9UMD9 MT-TI-201ENST00000387365 69 ntBASIC3.46□□□□□ -1.86
COL17A1Q9UMD9 RNU6-644P-201ENST00000391155 98 ntBASIC3.46□□□□□ -1.86
COL17A1Q9UMD9 RNA5SP354-201ENST00000391247 136 ntBASIC3.46□□□□□ -1.86
COL17A1Q9UMD9 AL117342.1-201ENST00000404861 406 ntBASIC3.46□□□□□ -1.86
COL17A1Q9UMD9 AP000567.1-201ENST00000406413 156 ntBASIC3.46□□□□□ -1.86
COL17A1Q9UMD9 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC3.46□□□□□ -1.86
COL17A1Q9UMD9 AC079598.5-201ENST00000547460 117 ntBASIC3.46□□□□□ -1.86
COL17A1Q9UMD9 AL359821.1-201ENST00000605519 182 ntBASIC3.46□□□□□ -1.86
COL17A1Q9UMD9 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
COL17A1Q9UMD9 SNORD115-13-201ENST00000363358 82 ntBASIC3.45□□□□□ -1.86
COL17A1Q9UMD9 SNORD115-16-201ENST00000363887 82 ntBASIC3.45□□□□□ -1.86
COL17A1Q9UMD9 SNORD115-1-201ENST00000364961 82 ntBASIC3.45□□□□□ -1.86
COL17A1Q9UMD9 SNORA25.9-201ENST00000365087 128 ntBASIC3.45□□□□□ -1.86
COL17A1Q9UMD9 AL451046.2-201ENST00000403074 277 ntBASIC3.45□□□□□ -1.86
COL17A1Q9UMD9 AC004866.1-201ENST00000411748 78 ntBASIC3.45□□□□□ -1.86
COL17A1Q9UMD9 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.45□□□□□ -1.86
COL17A1Q9UMD9 AC011406.1-201ENST00000512440 370 ntBASIC3.45□□□□□ -1.86
COL17A1Q9UMD9 AC097639.2-201ENST00000603159 172 ntBASIC3.45□□□□□ -1.86
COL17A1Q9UMD9 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC3.45□□□□□ -1.86
COL17A1Q9UMD9 ZNF355P-201ENST00000427301 3216 ntBASIC3.45□□□□□ -1.86
COL17A1Q9UMD9 snoU2_19.1-201ENST00000362361 80 ntBASIC3.44□□□□□ -1.86
COL17A1Q9UMD9 Y_RNA.124-201ENST00000363339 93 ntBASIC3.44□□□□□ -1.86
COL17A1Q9UMD9 RNU6-457P-201ENST00000363999 107 ntBASIC3.44□□□□□ -1.86
COL17A1Q9UMD9 AC097463.2-201ENST00000421074 142 ntBASIC3.44□□□□□ -1.86
COL17A1Q9UMD9 AC105245.1-201ENST00000581934 244 ntBASIC3.44□□□□□ -1.86
COL17A1Q9UMD9 AC067747.1-201ENST00000608026 250 ntBASIC3.44□□□□□ -1.86
COL17A1Q9UMD9 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC3.43□□□□□ -1.86
COL17A1Q9UMD9 AC093010.3-201ENST00000570269 15214 ntBASIC3.43□□□□□ -1.86
COL17A1Q9UMD9 Y_RNA.190-201ENST00000363964 101 ntBASIC3.43□□□□□ -1.86
COL17A1Q9UMD9 RNU4-36P-201ENST00000364294 144 ntBASIC3.43□□□□□ -1.86
COL17A1Q9UMD9 MIR221-201ENST00000385135 110 ntBASIC3.43□□□□□ -1.86
COL17A1Q9UMD9 RNU6-1077P-201ENST00000410506 102 ntBASIC3.43□□□□□ -1.86
COL17A1Q9UMD9 RNA5SP504-201ENST00000410676 117 ntBASIC3.43□□□□□ -1.86
COL17A1Q9UMD9 RNU6-113P-201ENST00000516653 101 ntBASIC3.43□□□□□ -1.86
COL17A1Q9UMD9 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.43□□□□□ -1.86
COL17A1Q9UMD9 MIR378A-201ENST00000362177 66 ntBASIC3.42□□□□□ -1.86
COL17A1Q9UMD9 RNU1-72P-201ENST00000362976 153 ntBASIC3.42□□□□□ -1.86
COL17A1Q9UMD9 RNU6-674P-201ENST00000363831 107 ntBASIC3.42□□□□□ -1.86
COL17A1Q9UMD9 RNU1-133P-201ENST00000364867 167 ntBASIC3.42□□□□□ -1.86
COL17A1Q9UMD9 RNU6-1323P-201ENST00000384025 107 ntBASIC3.42□□□□□ -1.86
COL17A1Q9UMD9 RNA5SP252-201ENST00000391131 119 ntBASIC3.42□□□□□ -1.86
COL17A1Q9UMD9 RN7SKP123-201ENST00000410732 291 ntBASIC3.42□□□□□ -1.86
COL17A1Q9UMD9 RNA5SP344-201ENST00000411081 104 ntBASIC3.42□□□□□ -1.86
COL17A1Q9UMD9 BTF3P4-201ENST00000418852 495 ntBASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms