Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 MIR3126-201ENST00000577443 74 ntBASIC3.12□□□□□ -1.91
CCDC87Q9NVE4 MIR4762-201ENST00000585261 75 ntBASIC3.12□□□□□ -1.91
CCDC87Q9NVE4 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC3.12□□□□□ -1.91
CCDC87Q9NVE4 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC87Q9NVE4 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC87Q9NVE4 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC87Q9NVE4 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC87Q9NVE4 RNA5SP482-201ENST00000391269 118 ntBASIC3.11□□□□□ -1.91
CCDC87Q9NVE4 MLLT10P1-201ENST00000418346 262 ntBASIC3.11□□□□□ -1.91
CCDC87Q9NVE4 RPS12P2-201ENST00000439728 269 ntBASIC3.11□□□□□ -1.91
CCDC87Q9NVE4 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC3.11□□□□□ -1.91
CCDC87Q9NVE4 RNA5SP458-201ENST00000516188 119 ntBASIC3.11□□□□□ -1.91
CCDC87Q9NVE4 RNA5SP76-201ENST00000516277 87 ntBASIC3.11□□□□□ -1.91
CCDC87Q9NVE4 RNA5SP281-201ENST00000516504 135 ntBASIC3.11□□□□□ -1.91
CCDC87Q9NVE4 Y_RNA.712-201ENST00000517011 92 ntBASIC3.11□□□□□ -1.91
CCDC87Q9NVE4 MIR3121-201ENST00000579680 77 ntBASIC3.11□□□□□ -1.91
CCDC87Q9NVE4 AL353997.5-201ENST00000618886 171 ntBASIC3.11□□□□□ -1.91
CCDC87Q9NVE4 MIR6733-201ENST00000635723 61 ntBASIC3.11□□□□□ -1.91
CCDC87Q9NVE4 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.11□□□□□ -1.91
CCDC87Q9NVE4 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC87Q9NVE4 AC016717.2-201ENST00000609089 5141 ntBASIC3.1□□□□□ -1.91
CCDC87Q9NVE4 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
CCDC87Q9NVE4 U8.5-201ENST00000364528 136 ntBASIC3.1□□□□□ -1.91
CCDC87Q9NVE4 RNU1-91P-201ENST00000364746 163 ntBASIC3.1□□□□□ -1.91
CCDC87Q9NVE4 MIR802-201ENST00000390235 94 ntBASIC3.1□□□□□ -1.91
CCDC87Q9NVE4 SNORD72-201ENST00000390994 80 ntBASIC3.1□□□□□ -1.91
CCDC87Q9NVE4 MIR891A-201ENST00000401237 79 ntBASIC3.1□□□□□ -1.91
CCDC87Q9NVE4 AC099677.2-201ENST00000436385 175 ntBASIC3.1□□□□□ -1.91
CCDC87Q9NVE4 RNA5SP137-201ENST00000516833 135 ntBASIC3.1□□□□□ -1.91
CCDC87Q9NVE4 RNU1-104P-201ENST00000517280 175 ntBASIC3.1□□□□□ -1.91
CCDC87Q9NVE4 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC87Q9NVE4 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.1□□□□□ -1.91
CCDC87Q9NVE4 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.1□□□□□ -1.91
CCDC87Q9NVE4 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
CCDC87Q9NVE4 RNU6-215P-201ENST00000365169 102 ntBASIC3.09□□□□□ -1.91
CCDC87Q9NVE4 RNU6ATAC3P-201ENST00000387974 126 ntBASIC3.09□□□□□ -1.91
CCDC87Q9NVE4 SNRPGP13-201ENST00000442212 177 ntBASIC3.09□□□□□ -1.91
CCDC87Q9NVE4 AL158147.1-201ENST00000443970 75 ntBASIC3.09□□□□□ -1.91
CCDC87Q9NVE4 Y_RNA.690-201ENST00000516603 95 ntBASIC3.09□□□□□ -1.91
CCDC87Q9NVE4 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC87Q9NVE4 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC87Q9NVE4 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC3.09□□□□□ -1.91
CCDC87Q9NVE4 Y_RNA.280-201ENST00000364765 112 ntBASIC3.08□□□□□ -1.92
CCDC87Q9NVE4 RNU6-1056P-201ENST00000383996 107 ntBASIC3.08□□□□□ -1.92
CCDC87Q9NVE4 SNORD61-201ENST00000384252 73 ntBASIC3.08□□□□□ -1.92
CCDC87Q9NVE4 AL590004.2-201ENST00000404787 371 ntBASIC3.08□□□□□ -1.92
CCDC87Q9NVE4 AC069257.2-201ENST00000441819 155 ntBASIC3.08□□□□□ -1.92
CCDC87Q9NVE4 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC87Q9NVE4 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC87Q9NVE4 MIR1291-201ENST00000627649 87 ntBASIC3.08□□□□□ -1.92
CCDC87Q9NVE4 AC245060.5-201ENST00000610778 3293 ntBASIC3.08□□□□□ -1.92
CCDC87Q9NVE4 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC87Q9NVE4 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC87Q9NVE4 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC87Q9NVE4 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC3.07□□□□□ -1.92
CCDC87Q9NVE4 Y_RNA.52-201ENST00000362760 96 ntBASIC3.07□□□□□ -1.92
CCDC87Q9NVE4 RNU6-647P-201ENST00000364243 107 ntBASIC3.07□□□□□ -1.92
CCDC87Q9NVE4 RNU6-1019P-201ENST00000364424 107 ntBASIC3.07□□□□□ -1.92
CCDC87Q9NVE4 RNU1-148P-201ENST00000384472 162 ntBASIC3.07□□□□□ -1.92
CCDC87Q9NVE4 SNORD20-201ENST00000384550 80 ntBASIC3.07□□□□□ -1.92
CCDC87Q9NVE4 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.07□□□□□ -1.92
CCDC87Q9NVE4 AC245047.3-201ENST00000429428 127 ntBASIC3.07□□□□□ -1.92
CCDC87Q9NVE4 AC026436.1-201ENST00000510537 270 ntBASIC3.07□□□□□ -1.92
CCDC87Q9NVE4 RPPH1-2P-201ENST00000516688 293 ntBASIC3.07□□□□□ -1.92
CCDC87Q9NVE4 MIR3129-201ENST00000581095 76 ntBASIC3.07□□□□□ -1.92
CCDC87Q9NVE4 MIR5092-201ENST00000583139 88 ntBASIC3.07□□□□□ -1.92
CCDC87Q9NVE4 AC022217.4-201ENST00000604389 163 ntBASIC3.07□□□□□ -1.92
CCDC87Q9NVE4 AC069114.2-201ENST00000604699 304 ntBASIC3.07□□□□□ -1.92
CCDC87Q9NVE4 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC87Q9NVE4 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC87Q9NVE4 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC87Q9NVE4 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.06□□□□□ -1.92
CCDC87Q9NVE4 SNORD115-3-201ENST00000363100 82 ntBASIC3.06□□□□□ -1.92
CCDC87Q9NVE4 SNORD68-201ENST00000363214 84 ntBASIC3.06□□□□□ -1.92
CCDC87Q9NVE4 Y_RNA.114-201ENST00000363265 113 ntBASIC3.06□□□□□ -1.92
CCDC87Q9NVE4 SNORD14E-201ENST00000364009 85 ntBASIC3.06□□□□□ -1.92
CCDC87Q9NVE4 snoU2-30.1-201ENST00000365012 70 ntBASIC3.06□□□□□ -1.92
CCDC87Q9NVE4 RNU6-442P-201ENST00000383968 104 ntBASIC3.06□□□□□ -1.92
CCDC87Q9NVE4 AL158823.1-201ENST00000418441 478 ntBASIC3.06□□□□□ -1.92
CCDC87Q9NVE4 RNU7-107P-201ENST00000459121 61 ntBASIC3.06□□□□□ -1.92
CCDC87Q9NVE4 RNU6-693P-201ENST00000516134 107 ntBASIC3.06□□□□□ -1.92
CCDC87Q9NVE4 Y_RNA.666-201ENST00000516187 112 ntBASIC3.06□□□□□ -1.92
CCDC87Q9NVE4 RNU6-919P-201ENST00000516731 104 ntBASIC3.06□□□□□ -1.92
CCDC87Q9NVE4 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC87Q9NVE4 RNU6-1084P-201ENST00000362498 107 ntBASIC3.05□□□□□ -1.92
CCDC87Q9NVE4 SNORA1-201ENST00000384107 130 ntBASIC3.05□□□□□ -1.92
CCDC87Q9NVE4 AF228730.3-201ENST00000436691 102 ntBASIC3.05□□□□□ -1.92
CCDC87Q9NVE4 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC87Q9NVE4 RNU2-60P-201ENST00000517290 128 ntBASIC3.05□□□□□ -1.92
CCDC87Q9NVE4 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC87Q9NVE4 SNORA28-201ENST00000606769 126 ntBASIC3.05□□□□□ -1.92
CCDC87Q9NVE4 AC006441.5-201ENST00000612680 209 ntBASIC3.05□□□□□ -1.92
CCDC87Q9NVE4 5S_rRNA.11-201ENST00000618635 84 ntBASIC3.05□□□□□ -1.92
CCDC87Q9NVE4 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC87Q9NVE4 MIR6873-201ENST00000622788 63 ntBASIC3.05□□□□□ -1.92
CCDC87Q9NVE4 U6.95-201ENST00000636931 70 ntBASIC3.05□□□□□ -1.92
CCDC87Q9NVE4 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC87Q9NVE4 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
CCDC87Q9NVE4 RNU6-235P-201ENST00000362644 107 ntBASIC3.04□□□□□ -1.92
CCDC87Q9NVE4 Y_RNA.265-201ENST00000364677 108 ntBASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms