Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 SNORD12-201ENST00000391002 90 ntBASIC1.06□□□□□ -2.24
ZNF540Q8NDQ6 RNU11-5P-201ENST00000391216 129 ntBASIC1.06□□□□□ -2.24
ZNF540Q8NDQ6 RNU6-1186P-201ENST00000410429 97 ntBASIC1.06□□□□□ -2.24
ZNF540Q8NDQ6 RNA5SP511-201ENST00000410487 115 ntBASIC1.06□□□□□ -2.24
ZNF540Q8NDQ6 RNU2-14P-201ENST00000411053 191 ntBASIC1.06□□□□□ -2.24
ZNF540Q8NDQ6 POLR2J4-204ENST00000418424 324 ntBASIC1.06□□□□□ -2.24
ZNF540Q8NDQ6 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC1.06□□□□□ -2.24
ZNF540Q8NDQ6 AC010154.1-201ENST00000425857 269 ntBASIC1.06□□□□□ -2.24
ZNF540Q8NDQ6 SUMO1P2-201ENST00000452524 304 ntBASIC1.06□□□□□ -2.24
ZNF540Q8NDQ6 AC091021.1-201ENST00000468051 388 ntBASIC1.06□□□□□ -2.24
ZNF540Q8NDQ6 RNU6-191P-201ENST00000516295 94 ntBASIC1.06□□□□□ -2.24
ZNF540Q8NDQ6 SNORA40.15-201ENST00000516884 107 ntBASIC1.06□□□□□ -2.24
ZNF540Q8NDQ6 Y_RNA.122-201ENST00000363331 96 ntBASIC1.05□□□□□ -2.24
ZNF540Q8NDQ6 RNU6-801P-201ENST00000364087 105 ntBASIC1.05□□□□□ -2.24
ZNF540Q8NDQ6 Y_RNA.368-201ENST00000365547 113 ntBASIC1.05□□□□□ -2.24
ZNF540Q8NDQ6 MIR19B1-201ENST00000384829 87 ntBASIC1.05□□□□□ -2.24
ZNF540Q8NDQ6 SNORA26.5-201ENST00000391215 123 ntBASIC1.05□□□□□ -2.24
ZNF540Q8NDQ6 AL390729.2-201ENST00000416137 156 ntBASIC1.05□□□□□ -2.24
ZNF540Q8NDQ6 AL162725.1-201ENST00000435405 301 ntBASIC1.05□□□□□ -2.24
ZNF540Q8NDQ6 MTND3P2-201ENST00000438452 342 ntBASIC1.05□□□□□ -2.24
ZNF540Q8NDQ6 RPS20P10-201ENST00000451209 253 ntBASIC1.05□□□□□ -2.24
ZNF540Q8NDQ6 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.05□□□□□ -2.24
ZNF540Q8NDQ6 SEPT14P8-201ENST00000508026 178 ntBASIC1.05□□□□□ -2.24
ZNF540Q8NDQ6 MTND1P19-201ENST00000511780 315 ntBASIC1.05□□□□□ -2.24
ZNF540Q8NDQ6 Y_RNA.668-201ENST00000516233 93 ntBASIC1.05□□□□□ -2.24
ZNF540Q8NDQ6 RNA5SP102-201ENST00000516865 106 ntBASIC1.05□□□□□ -2.24
ZNF540Q8NDQ6 RNU6-570P-201ENST00000517051 105 ntBASIC1.05□□□□□ -2.24
ZNF540Q8NDQ6 RNU7-172P-201ENST00000517125 64 ntBASIC1.05□□□□□ -2.24
ZNF540Q8NDQ6 RPL21P9-201ENST00000556149 474 ntBASIC1.05□□□□□ -2.24
ZNF540Q8NDQ6 AC073349.3-201ENST00000617616 186 ntBASIC1.05□□□□□ -2.24
ZNF540Q8NDQ6 SNORD3E-202ENST00000627253 216 ntBASIC1.05□□□□□ -2.24
ZNF540Q8NDQ6 AC018630.2-201ENST00000534866 2403 ntBASIC1.04□□□□□ -2.24
ZNF540Q8NDQ6 RNU4-90P-201ENST00000362773 141 ntBASIC1.04□□□□□ -2.24
ZNF540Q8NDQ6 RNU6-238P-201ENST00000363313 106 ntBASIC1.04□□□□□ -2.24
ZNF540Q8NDQ6 RNU6-1048P-201ENST00000364054 107 ntBASIC1.04□□□□□ -2.24
ZNF540Q8NDQ6 Y_RNA.796-201ENST00000364268 102 ntBASIC1.04□□□□□ -2.24
ZNF540Q8NDQ6 Y_RNA.237-201ENST00000364439 102 ntBASIC1.04□□□□□ -2.24
ZNF540Q8NDQ6 Y_RNA.799-201ENST00000364992 102 ntBASIC1.04□□□□□ -2.24
ZNF540Q8NDQ6 SNORA22-201ENST00000383907 134 ntBASIC1.04□□□□□ -2.24
ZNF540Q8NDQ6 RNU6-574P-201ENST00000384265 107 ntBASIC1.04□□□□□ -2.24
ZNF540Q8NDQ6 Y_RNA.508-201ENST00000384502 114 ntBASIC1.04□□□□□ -2.24
ZNF540Q8NDQ6 SNORA22C-201ENST00000384614 134 ntBASIC1.04□□□□□ -2.24
ZNF540Q8NDQ6 RNU6-21P-201ENST00000384710 107 ntBASIC1.04□□□□□ -2.24
ZNF540Q8NDQ6 RNU6-440P-201ENST00000390882 105 ntBASIC1.04□□□□□ -2.24
ZNF540Q8NDQ6 RPS4XP11-201ENST00000446897 772 ntBASIC1.04□□□□□ -2.24
ZNF540Q8NDQ6 RNU6-1338P-201ENST00000516328 91 ntBASIC1.04□□□□□ -2.24
ZNF540Q8NDQ6 RNU6-165P-201ENST00000517170 99 ntBASIC1.04□□□□□ -2.24
ZNF540Q8NDQ6 MIR4452-201ENST00000583004 71 ntBASIC1.04□□□□□ -2.24
ZNF540Q8NDQ6 AC006380.1-201ENST00000603598 186 ntBASIC1.04□□□□□ -2.24
ZNF540Q8NDQ6 SNORA28-201ENST00000606769 126 ntBASIC1.04□□□□□ -2.24
ZNF540Q8NDQ6 GHRLOS.1-201ENST00000610995 70 ntBASIC1.04□□□□□ -2.24
ZNF540Q8NDQ6 MIR6079-201ENST00000635807 62 ntBASIC1.04□□□□□ -2.24
ZNF540Q8NDQ6 RNU6-324P-201ENST00000363957 106 ntBASIC1.03□□□□□ -2.24
ZNF540Q8NDQ6 Y_RNA.217-201ENST00000364214 105 ntBASIC1.03□□□□□ -2.24
ZNF540Q8NDQ6 Y_RNA.569-201ENST00000384749 103 ntBASIC1.03□□□□□ -2.24
ZNF540Q8NDQ6 RNU6-651P-201ENST00000411040 105 ntBASIC1.03□□□□□ -2.24
ZNF540Q8NDQ6 POLR2KP2-201ENST00000438155 177 ntBASIC1.03□□□□□ -2.24
ZNF540Q8NDQ6 AC104332.1-201ENST00000440471 797 ntBASIC1.03□□□□□ -2.24
ZNF540Q8NDQ6 Y_RNA.641-201ENST00000459414 105 ntBASIC1.03□□□□□ -2.24
ZNF540Q8NDQ6 Y_RNA.637-201ENST00000459424 114 ntBASIC1.03□□□□□ -2.24
ZNF540Q8NDQ6 AC087343.1-201ENST00000477341 475 ntBASIC1.03□□□□□ -2.24
ZNF540Q8NDQ6 AC091959.1-201ENST00000495857 238 ntBASIC1.03□□□□□ -2.24
ZNF540Q8NDQ6 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC1.03□□□□□ -2.24
ZNF540Q8NDQ6 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.03□□□□□ -2.24
ZNF540Q8NDQ6 MIR4503-201ENST00000582187 83 ntBASIC1.03□□□□□ -2.24
ZNF540Q8NDQ6 MIR4295-201ENST00000585286 85 ntBASIC1.03□□□□□ -2.24
ZNF540Q8NDQ6 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.03□□□□□ -2.24
ZNF540Q8NDQ6 SNORA1B-201ENST00000362535 133 ntBASIC1.02□□□□□ -2.25
ZNF540Q8NDQ6 Y_RNA.152-201ENST00000363578 100 ntBASIC1.02□□□□□ -2.25
ZNF540Q8NDQ6 Y_RNA.193-201ENST00000363979 102 ntBASIC1.02□□□□□ -2.25
ZNF540Q8NDQ6 RNU6-326P-201ENST00000365480 107 ntBASIC1.02□□□□□ -2.25
ZNF540Q8NDQ6 SNORA72.4-201ENST00000384174 132 ntBASIC1.02□□□□□ -2.25
ZNF540Q8NDQ6 Y_RNA.461-201ENST00000384263 103 ntBASIC1.02□□□□□ -2.25
ZNF540Q8NDQ6 RNU6-136P-201ENST00000384663 107 ntBASIC1.02□□□□□ -2.25
ZNF540Q8NDQ6 Y_RNA.562-201ENST00000384695 113 ntBASIC1.02□□□□□ -2.25
ZNF540Q8NDQ6 snosnR66.1-201ENST00000391095 99 ntBASIC1.02□□□□□ -2.25
ZNF540Q8NDQ6 RNU6-855P-201ENST00000410395 104 ntBASIC1.02□□□□□ -2.25
ZNF540Q8NDQ6 TRBVB-201ENST00000477100 408 ntBASIC1.02□□□□□ -2.25
ZNF540Q8NDQ6 AC092991.1-201ENST00000477176 376 ntBASIC1.02□□□□□ -2.25
ZNF540Q8NDQ6 SERF1AP1-201ENST00000514575 187 ntBASIC1.02□□□□□ -2.25
ZNF540Q8NDQ6 SNORA31.2-201ENST00000516019 134 ntBASIC1.02□□□□□ -2.25
ZNF540Q8NDQ6 RNU6-1143P-201ENST00000516125 104 ntBASIC1.02□□□□□ -2.25
ZNF540Q8NDQ6 RNA5SP220-201ENST00000516298 104 ntBASIC1.02□□□□□ -2.25
ZNF540Q8NDQ6 Y_RNA.680-201ENST00000516441 93 ntBASIC1.02□□□□□ -2.25
ZNF540Q8NDQ6 RNU6-1291P-201ENST00000516591 104 ntBASIC1.02□□□□□ -2.25
ZNF540Q8NDQ6 DEFB108E-201ENST00000524692 240 ntBASIC1.02□□□□□ -2.25
ZNF540Q8NDQ6 MIR4643-201ENST00000577473 78 ntBASIC1.02□□□□□ -2.25
ZNF540Q8NDQ6 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.02□□□□□ -2.25
ZNF540Q8NDQ6 AL078603.1-201ENST00000603824 313 ntBASIC1.02□□□□□ -2.25
ZNF540Q8NDQ6 AL162730.1-201ENST00000605734 292 ntBASIC1.02□□□□□ -2.25
ZNF540Q8NDQ6 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.02□□□□□ -2.25
ZNF540Q8NDQ6 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
ZNF540Q8NDQ6 UBE2WP1-201ENST00000362030 340 ntBASIC1.01□□□□□ -2.25
ZNF540Q8NDQ6 MIRLET7C-201ENST00000362160 84 ntBASIC1.01□□□□□ -2.25
ZNF540Q8NDQ6 Y_RNA.149-201ENST00000363558 117 ntBASIC1.01□□□□□ -2.25
ZNF540Q8NDQ6 Y_RNA.176-201ENST00000363815 109 ntBASIC1.01□□□□□ -2.25
ZNF540Q8NDQ6 RNU6-1187P-201ENST00000364771 110 ntBASIC1.01□□□□□ -2.25
ZNF540Q8NDQ6 U8.7-201ENST00000364940 136 ntBASIC1.01□□□□□ -2.25
ZNF540Q8NDQ6 RNU6-53P-201ENST00000365367 106 ntBASIC1.01□□□□□ -2.25
ZNF540Q8NDQ6 Y_RNA.456-201ENST00000384232 111 ntBASIC1.01□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 130.5 ms