Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 RNU6-1130P-201ENST00000365434 107 ntBASIC1.77□□□□□ -2.13
PDLIM4P50479 RNU6-484P-201ENST00000384016 107 ntBASIC1.77□□□□□ -2.13
PDLIM4P50479 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.77□□□□□ -2.13
PDLIM4P50479 RNU6-482P-201ENST00000391068 107 ntBASIC1.77□□□□□ -2.13
PDLIM4P50479 RNA5SP323-201ENST00000391094 133 ntBASIC1.77□□□□□ -2.13
PDLIM4P50479 HMGN2P39-201ENST00000398005 273 ntBASIC1.77□□□□□ -2.13
PDLIM4P50479 AC019129.1-201ENST00000403786 261 ntBASIC1.77□□□□□ -2.13
PDLIM4P50479 AL023284.1-201ENST00000403956 276 ntBASIC1.77□□□□□ -2.13
PDLIM4P50479 MIR1283-2-201ENST00000408621 87 ntBASIC1.77□□□□□ -2.13
PDLIM4P50479 RNA5SP270-201ENST00000411361 118 ntBASIC1.77□□□□□ -2.13
PDLIM4P50479 BX510359.4-201ENST00000423750 193 ntBASIC1.77□□□□□ -2.13
PDLIM4P50479 AL121914.1-201ENST00000450188 156 ntBASIC1.77□□□□□ -2.13
PDLIM4P50479 HMGN1P7-201ENST00000491722 313 ntBASIC1.77□□□□□ -2.13
PDLIM4P50479 AL163195.1-201ENST00000496941 348 ntBASIC1.77□□□□□ -2.13
PDLIM4P50479 RNU6-561P-201ENST00000516222 102 ntBASIC1.77□□□□□ -2.13
PDLIM4P50479 AP002004.2-201ENST00000531656 154 ntBASIC1.77□□□□□ -2.13
PDLIM4P50479 MIR3646-201ENST00000578301 84 ntBASIC1.77□□□□□ -2.13
PDLIM4P50479 MIR4662B-201ENST00000579498 81 ntBASIC1.77□□□□□ -2.13
PDLIM4P50479 MIR3910-1-201ENST00000580936 111 ntBASIC1.77□□□□□ -2.13
PDLIM4P50479 AC087685.1-201ENST00000587507 141 ntBASIC1.77□□□□□ -2.13
PDLIM4P50479 DNAJC19P2-201ENST00000593340 302 ntBASIC1.77□□□□□ -2.13
PDLIM4P50479 AL096840.1-201ENST00000603287 93 ntBASIC1.77□□□□□ -2.13
PDLIM4P50479 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.77□□□□□ -2.13
PDLIM4P50479 SNORD45.3-201ENST00000363836 72 ntBASIC1.76□□□□□ -2.13
PDLIM4P50479 RNU6-1019P-201ENST00000364424 107 ntBASIC1.76□□□□□ -2.13
PDLIM4P50479 RNU6-597P-201ENST00000365620 102 ntBASIC1.76□□□□□ -2.13
PDLIM4P50479 RNU6-187P-201ENST00000384139 106 ntBASIC1.76□□□□□ -2.13
PDLIM4P50479 SNORA8-201ENST00000384574 139 ntBASIC1.76□□□□□ -2.13
PDLIM4P50479 MIR518A2-201ENST00000384966 87 ntBASIC1.76□□□□□ -2.13
PDLIM4P50479 MIR676-201ENST00000390702 67 ntBASIC1.76□□□□□ -2.13
PDLIM4P50479 MIR764-201ENST00000390811 85 ntBASIC1.76□□□□□ -2.13
PDLIM4P50479 RNU11-3P-201ENST00000391111 133 ntBASIC1.76□□□□□ -2.13
PDLIM4P50479 AL445646.1-201ENST00000431784 216 ntBASIC1.76□□□□□ -2.13
PDLIM4P50479 AC023449.1-201ENST00000454464 154 ntBASIC1.76□□□□□ -2.13
PDLIM4P50479 RNU6-197P-201ENST00000516680 100 ntBASIC1.76□□□□□ -2.13
PDLIM4P50479 RPL23AP91-201ENST00000569211 455 ntBASIC1.76□□□□□ -2.13
PDLIM4P50479 MIR4287-201ENST00000579398 78 ntBASIC1.76□□□□□ -2.13
PDLIM4P50479 MIR3935-201ENST00000583472 104 ntBASIC1.76□□□□□ -2.13
PDLIM4P50479 MIR4762-201ENST00000585261 75 ntBASIC1.76□□□□□ -2.13
PDLIM4P50479 AL627230.6-201ENST00000611129 280 ntBASIC1.76□□□□□ -2.13
PDLIM4P50479 Y_RNA.778-201ENST00000620203 90 ntBASIC1.76□□□□□ -2.13
PDLIM4P50479 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.76□□□□□ -2.13
PDLIM4P50479 Y_RNA.242-201ENST00000364473 110 ntBASIC1.75□□□□□ -2.13
PDLIM4P50479 Y_RNA.253-201ENST00000364562 112 ntBASIC1.75□□□□□ -2.13
PDLIM4P50479 SNORD116-18-201ENST00000383961 92 ntBASIC1.75□□□□□ -2.13
PDLIM4P50479 Y_RNA.587-201ENST00000391210 103 ntBASIC1.75□□□□□ -2.13
PDLIM4P50479 AC069257.2-201ENST00000441819 155 ntBASIC1.75□□□□□ -2.13
PDLIM4P50479 RPS27P1-201ENST00000450552 247 ntBASIC1.75□□□□□ -2.13
PDLIM4P50479 AC025033.1-201ENST00000463883 194 ntBASIC1.75□□□□□ -2.13
PDLIM4P50479 RNU7-28P-201ENST00000516759 62 ntBASIC1.75□□□□□ -2.13
PDLIM4P50479 RNU1-40P-201ENST00000516816 164 ntBASIC1.75□□□□□ -2.13
PDLIM4P50479 RNU1-97P-201ENST00000516872 164 ntBASIC1.75□□□□□ -2.13
PDLIM4P50479 RNU6-295P-201ENST00000516901 104 ntBASIC1.75□□□□□ -2.13
PDLIM4P50479 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC1.75□□□□□ -2.13
PDLIM4P50479 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.75□□□□□ -2.13
PDLIM4P50479 ZNF355P-201ENST00000427301 3216 ntBASIC1.75□□□□□ -2.13
PDLIM4P50479 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
PDLIM4P50479 Y_RNA.215-201ENST00000364204 112 ntBASIC1.74□□□□□ -2.13
PDLIM4P50479 U8.5-201ENST00000364528 136 ntBASIC1.74□□□□□ -2.13
PDLIM4P50479 RNU6-81P-201ENST00000365608 104 ntBASIC1.74□□□□□ -2.13
PDLIM4P50479 MIR583-201ENST00000384846 75 ntBASIC1.74□□□□□ -2.13
PDLIM4P50479 SNORA26-201ENST00000391286 122 ntBASIC1.74□□□□□ -2.13
PDLIM4P50479 FTH1P12-201ENST00000432137 551 ntBASIC1.74□□□□□ -2.13
PDLIM4P50479 TMSB4XP3-201ENST00000445144 114 ntBASIC1.74□□□□□ -2.13
PDLIM4P50479 MRPS17P9-201ENST00000511924 393 ntBASIC1.74□□□□□ -2.13
PDLIM4P50479 RNU6-1299P-201ENST00000516316 100 ntBASIC1.74□□□□□ -2.13
PDLIM4P50479 MIR378D2-201ENST00000580636 98 ntBASIC1.74□□□□□ -2.13
PDLIM4P50479 AC022217.4-201ENST00000604389 163 ntBASIC1.74□□□□□ -2.13
PDLIM4P50479 AC069114.2-201ENST00000604699 304 ntBASIC1.74□□□□□ -2.13
PDLIM4P50479 AL353997.5-201ENST00000618886 171 ntBASIC1.74□□□□□ -2.13
PDLIM4P50479 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
PDLIM4P50479 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.74□□□□□ -2.13
PDLIM4P50479 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
PDLIM4P50479 SNORA1B-201ENST00000362535 133 ntBASIC1.73□□□□□ -2.13
PDLIM4P50479 SNORA63D-201ENST00000364359 132 ntBASIC1.73□□□□□ -2.13
PDLIM4P50479 Y_RNA.393-201ENST00000383936 102 ntBASIC1.73□□□□□ -2.13
PDLIM4P50479 RNU6-1080P-201ENST00000383982 107 ntBASIC1.73□□□□□ -2.13
PDLIM4P50479 Y_RNA.432-201ENST00000384087 111 ntBASIC1.73□□□□□ -2.13
PDLIM4P50479 MIR597-201ENST00000384968 97 ntBASIC1.73□□□□□ -2.13
PDLIM4P50479 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
PDLIM4P50479 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
PDLIM4P50479 SNORA48.1-201ENST00000390879 135 ntBASIC1.73□□□□□ -2.13
PDLIM4P50479 SNORA79-201ENST00000408376 140 ntBASIC1.73□□□□□ -2.13
PDLIM4P50479 AC245047.4-201ENST00000433189 144 ntBASIC1.73□□□□□ -2.13
PDLIM4P50479 AL049830.1-201ENST00000468034 425 ntBASIC1.73□□□□□ -2.13
PDLIM4P50479 AC055731.1-201ENST00000474387 401 ntBASIC1.73□□□□□ -2.13
PDLIM4P50479 NDUFA4P2-201ENST00000489989 244 ntBASIC1.73□□□□□ -2.13
PDLIM4P50479 OR9P1P-201ENST00000496431 281 ntBASIC1.73□□□□□ -2.13
PDLIM4P50479 RNU6-346P-201ENST00000516288 111 ntBASIC1.73□□□□□ -2.13
PDLIM4P50479 RNA5SP364-201ENST00000516938 78 ntBASIC1.73□□□□□ -2.13
PDLIM4P50479 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.73□□□□□ -2.13
PDLIM4P50479 AL049861.1-201ENST00000603130 150 ntBASIC1.73□□□□□ -2.13
PDLIM4P50479 AC012493.3-201ENST00000604494 112 ntBASIC1.73□□□□□ -2.13
PDLIM4P50479 JPX_2.1-201ENST00000614161 69 ntBASIC1.73□□□□□ -2.13
PDLIM4P50479 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.73□□□□□ -2.13
PDLIM4P50479 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
PDLIM4P50479 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.72□□□□□ -2.13
PDLIM4P50479 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.72□□□□□ -2.13
PDLIM4P50479 RNU6-978P-201ENST00000364371 103 ntBASIC1.72□□□□□ -2.13
PDLIM4P50479 Y_RNA.568-201ENST00000384742 113 ntBASIC1.72□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 136.6 ms