Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AL606517.2-201ENST00000442855 241 ntBASIC3.14□□□□□ -1.91
MSX1P28360 AC114811.1-201ENST00000507207 168 ntBASIC3.14□□□□□ -1.91
MSX1P28360 YPEL5P2-201ENST00000605553 359 ntBASIC3.14□□□□□ -1.91
MSX1P28360 MIR8057-201ENST00000620957 69 ntBASIC3.14□□□□□ -1.91
MSX1P28360 AC064859.1-201ENST00000624741 174 ntBASIC3.14□□□□□ -1.91
MSX1P28360 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
MSX1P28360 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
MSX1P28360 AL356274.2-201ENST00000624379 3752 ntBASIC3.14□□□□□ -1.91
MSX1P28360 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.14□□□□□ -1.91
MSX1P28360 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.13□□□□□ -1.91
MSX1P28360 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
MSX1P28360 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.13□□□□□ -1.91
MSX1P28360 MIR605-201ENST00000385078 83 ntBASIC3.13□□□□□ -1.91
MSX1P28360 RNU6-220P-201ENST00000390919 107 ntBASIC3.13□□□□□ -1.91
MSX1P28360 SNORA26.7-201ENST00000391288 122 ntBASIC3.13□□□□□ -1.91
MSX1P28360 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.13□□□□□ -1.91
MSX1P28360 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC3.13□□□□□ -1.91
MSX1P28360 RNA5SP367-201ENST00000516557 118 ntBASIC3.13□□□□□ -1.91
MSX1P28360 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.13□□□□□ -1.91
MSX1P28360 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
MSX1P28360 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC3.12□□□□□ -1.91
MSX1P28360 SNORD115-34-201ENST00000362441 82 ntBASIC3.12□□□□□ -1.91
MSX1P28360 SNORD115-12-201ENST00000362583 82 ntBASIC3.12□□□□□ -1.91
MSX1P28360 SNORD115-29-201ENST00000362834 82 ntBASIC3.12□□□□□ -1.91
MSX1P28360 SNORD115-9-201ENST00000362912 82 ntBASIC3.12□□□□□ -1.91
MSX1P28360 SNORD115-21-201ENST00000362963 81 ntBASIC3.12□□□□□ -1.91
MSX1P28360 SNORD115-14-201ENST00000363090 81 ntBASIC3.12□□□□□ -1.91
MSX1P28360 Y_RNA.96-201ENST00000363092 109 ntBASIC3.12□□□□□ -1.91
MSX1P28360 SNORD115-13-201ENST00000363358 82 ntBASIC3.12□□□□□ -1.91
MSX1P28360 SNORD115-41-201ENST00000363608 82 ntBASIC3.12□□□□□ -1.91
MSX1P28360 SNORD115-11-201ENST00000363616 82 ntBASIC3.12□□□□□ -1.91
MSX1P28360 SNORD115-5-201ENST00000363633 82 ntBASIC3.12□□□□□ -1.91
MSX1P28360 SNORD115-39-201ENST00000363694 82 ntBASIC3.12□□□□□ -1.91
MSX1P28360 SNORD115-4-201ENST00000363810 82 ntBASIC3.12□□□□□ -1.91
MSX1P28360 SNORD115-16-201ENST00000363887 82 ntBASIC3.12□□□□□ -1.91
MSX1P28360 SNORD115-6-201ENST00000363942 82 ntBASIC3.12□□□□□ -1.91
MSX1P28360 SNORD115-42-201ENST00000364273 82 ntBASIC3.12□□□□□ -1.91
MSX1P28360 SNORD115-15-201ENST00000364809 81 ntBASIC3.12□□□□□ -1.91
MSX1P28360 SNORD115-1-201ENST00000364961 82 ntBASIC3.12□□□□□ -1.91
MSX1P28360 SNORD115-26-201ENST00000365067 82 ntBASIC3.12□□□□□ -1.91
MSX1P28360 SNORD115-10-201ENST00000365073 81 ntBASIC3.12□□□□□ -1.91
MSX1P28360 RNU6-1276P-201ENST00000365372 104 ntBASIC3.12□□□□□ -1.91
MSX1P28360 SNORD115-43-201ENST00000365503 82 ntBASIC3.12□□□□□ -1.91
MSX1P28360 SNORD115-36-201ENST00000365629 82 ntBASIC3.12□□□□□ -1.91
MSX1P28360 RNU6-163P-201ENST00000384396 106 ntBASIC3.12□□□□□ -1.91
MSX1P28360 SNORA18-201ENST00000384416 132 ntBASIC3.12□□□□□ -1.91
MSX1P28360 SNORD17-201ENST00000390930 237 ntBASIC3.12□□□□□ -1.91
MSX1P28360 MIR1262-201ENST00000408276 93 ntBASIC3.12□□□□□ -1.91
MSX1P28360 POLR2J4-204ENST00000418424 324 ntBASIC3.12□□□□□ -1.91
MSX1P28360 RPS27P29-201ENST00000463110 252 ntBASIC3.12□□□□□ -1.91
MSX1P28360 AC025518.1-201ENST00000479856 347 ntBASIC3.12□□□□□ -1.91
MSX1P28360 AL049873.1-201ENST00000480540 376 ntBASIC3.12□□□□□ -1.91
MSX1P28360 RN7SL504P-201ENST00000494496 287 ntBASIC3.12□□□□□ -1.91
MSX1P28360 ZNF861P-201ENST00000588126 639 ntBASIC3.12□□□□□ -1.91
MSX1P28360 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
MSX1P28360 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
MSX1P28360 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
MSX1P28360 RNA5SP493-201ENST00000364115 91 ntBASIC3.11□□□□□ -1.91
MSX1P28360 SNORA25.6-201ENST00000364121 118 ntBASIC3.11□□□□□ -1.91
MSX1P28360 RNU6-60P-201ENST00000364792 103 ntBASIC3.11□□□□□ -1.91
MSX1P28360 RNU6-813P-201ENST00000384691 107 ntBASIC3.11□□□□□ -1.91
MSX1P28360 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
MSX1P28360 RNU4-69P-201ENST00000410677 143 ntBASIC3.11□□□□□ -1.91
MSX1P28360 MRPL35P3-201ENST00000421557 364 ntBASIC3.11□□□□□ -1.91
MSX1P28360 RNA5SP380-201ENST00000517190 98 ntBASIC3.11□□□□□ -1.91
MSX1P28360 IGKV2-26-201ENST00000518305 343 ntBASIC3.11□□□□□ -1.91
MSX1P28360 AC090821.2-201ENST00000523552 176 ntBASIC3.11□□□□□ -1.91
MSX1P28360 MIR4425-201ENST00000580572 84 ntBASIC3.11□□□□□ -1.91
MSX1P28360 MIR548Z-201ENST00000584743 97 ntBASIC3.11□□□□□ -1.91
MSX1P28360 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
MSX1P28360 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
MSX1P28360 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
MSX1P28360 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.1□□□□□ -1.91
MSX1P28360 AC092881.1-201ENST00000638218 2733 ntBASIC3.1□□□□□ -1.91
MSX1P28360 SNORD45B-201ENST00000364617 72 ntBASIC3.1□□□□□ -1.91
MSX1P28360 RNU6-497P-201ENST00000365316 104 ntBASIC3.1□□□□□ -1.91
MSX1P28360 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
MSX1P28360 RNU6-675P-201ENST00000384236 104 ntBASIC3.1□□□□□ -1.91
MSX1P28360 RNU6-424P-201ENST00000384367 105 ntBASIC3.1□□□□□ -1.91
MSX1P28360 Y_RNA.494-201ENST00000384432 111 ntBASIC3.1□□□□□ -1.91
MSX1P28360 RNA5SP109-201ENST00000391010 116 ntBASIC3.1□□□□□ -1.91
MSX1P28360 AL353813.1-201ENST00000440700 253 ntBASIC3.1□□□□□ -1.91
MSX1P28360 STAG3L5P-204ENST00000443759 179 ntBASIC3.1□□□□□ -1.91
MSX1P28360 RPS29P12-201ENST00000460178 152 ntBASIC3.1□□□□□ -1.91
MSX1P28360 RNU6-1116P-201ENST00000517269 99 ntBASIC3.1□□□□□ -1.91
MSX1P28360 MIR4777-201ENST00000583710 86 ntBASIC3.1□□□□□ -1.91
MSX1P28360 MIR7112-201ENST00000616126 65 ntBASIC3.1□□□□□ -1.91
MSX1P28360 AC027279.3-201ENST00000625055 122 ntBASIC3.1□□□□□ -1.91
MSX1P28360 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC3.1□□□□□ -1.91
MSX1P28360 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
MSX1P28360 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.09□□□□□ -1.91
MSX1P28360 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
MSX1P28360 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.09□□□□□ -1.91
MSX1P28360 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.09□□□□□ -1.91
MSX1P28360 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
MSX1P28360 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.91
MSX1P28360 Y_RNA.73-201ENST00000362910 113 ntBASIC3.09□□□□□ -1.91
MSX1P28360 RNU6-679P-201ENST00000391003 106 ntBASIC3.09□□□□□ -1.91
MSX1P28360 RNU6-972P-201ENST00000391208 107 ntBASIC3.09□□□□□ -1.91
MSX1P28360 SNORA7.5-201ENST00000410672 110 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 160 ms