Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.05□□□□□ -1.92
COL8A1P27658 MIR340-201ENST00000362125 95 ntBASIC3.05□□□□□ -1.92
COL8A1P27658 SNORA40.18-201ENST00000391200 128 ntBASIC3.05□□□□□ -1.92
COL8A1P27658 RN7SL93P-201ENST00000463035 293 ntBASIC3.05□□□□□ -1.92
COL8A1P27658 RNU2-58P-201ENST00000516403 183 ntBASIC3.05□□□□□ -1.92
COL8A1P27658 SNORA31.21-201ENST00000517180 77 ntBASIC3.05□□□□□ -1.92
COL8A1P27658 IGHVIII-5-1-201ENST00000523059 99 ntBASIC3.05□□□□□ -1.92
COL8A1P27658 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.05□□□□□ -1.92
COL8A1P27658 MIR5047-201ENST00000579212 100 ntBASIC3.05□□□□□ -1.92
COL8A1P27658 MIR3152-201ENST00000579801 74 ntBASIC3.05□□□□□ -1.92
COL8A1P27658 SEPT14P17-201ENST00000617978 177 ntBASIC3.05□□□□□ -1.92
COL8A1P27658 U7.8-201ENST00000619968 63 ntBASIC3.05□□□□□ -1.92
COL8A1P27658 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
COL8A1P27658 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
COL8A1P27658 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
COL8A1P27658 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
COL8A1P27658 TNPO1P3-201ENST00000436471 2662 ntBASIC3.05□□□□□ -1.92
COL8A1P27658 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
COL8A1P27658 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.04□□□□□ -1.92
COL8A1P27658 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
COL8A1P27658 RNU6-546P-201ENST00000383991 107 ntBASIC3.04□□□□□ -1.92
COL8A1P27658 AC009969.1-201ENST00000438726 172 ntBASIC3.04□□□□□ -1.92
COL8A1P27658 AC090821.2-201ENST00000523552 176 ntBASIC3.04□□□□□ -1.92
COL8A1P27658 MIR4276-201ENST00000584832 70 ntBASIC3.04□□□□□ -1.92
COL8A1P27658 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC3.04□□□□□ -1.92
COL8A1P27658 MIR338-201ENST00000636369 67 ntBASIC3.04□□□□□ -1.92
COL8A1P27658 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
COL8A1P27658 AC005336.3-201ENST00000623833 2679 ntBASIC3.04□□□□□ -1.92
COL8A1P27658 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
COL8A1P27658 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
COL8A1P27658 AC093908.1-201ENST00000623125 8092 ntBASIC3.03□□□□□ -1.92
COL8A1P27658 AL353746.1-201ENST00000566293 6881 ntBASIC3.03□□□□□ -1.92
COL8A1P27658 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.03□□□□□ -1.92
COL8A1P27658 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
COL8A1P27658 SNORA22.1-201ENST00000362701 134 ntBASIC3.03□□□□□ -1.92
COL8A1P27658 RNU6-613P-201ENST00000410412 108 ntBASIC3.03□□□□□ -1.92
COL8A1P27658 HMGN2P16-201ENST00000456802 261 ntBASIC3.03□□□□□ -1.92
COL8A1P27658 RN7SL330P-201ENST00000469709 307 ntBASIC3.03□□□□□ -1.92
COL8A1P27658 CTSLP2-204ENST00000629029 392 ntBASIC3.03□□□□□ -1.92
COL8A1P27658 MIR6841-201ENST00000637129 72 ntBASIC3.03□□□□□ -1.92
COL8A1P27658 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
COL8A1P27658 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
COL8A1P27658 Y_RNA.494-201ENST00000384432 111 ntBASIC3.02□□□□□ -1.93
COL8A1P27658 RNU6ATAC41P-201ENST00000408600 126 ntBASIC3.02□□□□□ -1.93
COL8A1P27658 RNA5SP293-201ENST00000410527 113 ntBASIC3.02□□□□□ -1.93
COL8A1P27658 RNU7-45P-201ENST00000459460 63 ntBASIC3.02□□□□□ -1.93
COL8A1P27658 AC114811.1-201ENST00000507207 168 ntBASIC3.02□□□□□ -1.93
COL8A1P27658 RNU6-871P-201ENST00000516122 100 ntBASIC3.02□□□□□ -1.93
COL8A1P27658 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC3.02□□□□□ -1.93
COL8A1P27658 XIST_intron.1-201ENST00000619444 68 ntBASIC3.02□□□□□ -1.93
COL8A1P27658 Y_RNA.788-201ENST00000622394 112 ntBASIC3.02□□□□□ -1.93
COL8A1P27658 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
COL8A1P27658 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.02□□□□□ -1.93
COL8A1P27658 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
COL8A1P27658 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
COL8A1P27658 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
COL8A1P27658 Y_RNA.57-201ENST00000362806 113 ntBASIC3.01□□□□□ -1.93
COL8A1P27658 RNU6-478P-201ENST00000363904 110 ntBASIC3.01□□□□□ -1.93
COL8A1P27658 RNU6-1083P-201ENST00000384022 107 ntBASIC3.01□□□□□ -1.93
COL8A1P27658 Y_RNA.567-201ENST00000384736 106 ntBASIC3.01□□□□□ -1.93
COL8A1P27658 RNA5SP323-201ENST00000391094 133 ntBASIC3.01□□□□□ -1.93
COL8A1P27658 RNA5SP482-201ENST00000391269 118 ntBASIC3.01□□□□□ -1.93
COL8A1P27658 MIR1265-201ENST00000408444 86 ntBASIC3.01□□□□□ -1.93
COL8A1P27658 RNU7-2P-201ENST00000516096 62 ntBASIC3.01□□□□□ -1.93
COL8A1P27658 IGLV3-17-201ENST00000519099 244 ntBASIC3.01□□□□□ -1.93
COL8A1P27658 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC3.01□□□□□ -1.93
COL8A1P27658 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
COL8A1P27658 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.01□□□□□ -1.93
COL8A1P27658 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
COL8A1P27658 Z83843.1-201ENST00000604070 3685 ntBASIC3□□□□□ -1.93
COL8A1P27658 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3□□□□□ -1.93
COL8A1P27658 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
COL8A1P27658 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3□□□□□ -1.93
COL8A1P27658 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3□□□□□ -1.93
COL8A1P27658 SNORA8-201ENST00000384574 139 ntBASIC3□□□□□ -1.93
COL8A1P27658 MIR515-2-201ENST00000384883 83 ntBASIC3□□□□□ -1.93
COL8A1P27658 MIR515-1-201ENST00000384884 83 ntBASIC3□□□□□ -1.93
COL8A1P27658 RPS29P28-201ENST00000446439 141 ntBASIC3□□□□□ -1.93
COL8A1P27658 UBL5P3-201ENST00000475112 231 ntBASIC3□□□□□ -1.93
COL8A1P27658 RNU6-1041P-201ENST00000516254 102 ntBASIC3□□□□□ -1.93
COL8A1P27658 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3□□□□□ -1.93
COL8A1P27658 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
COL8A1P27658 AC002546.1-201ENST00000588041 2504 ntBASIC3□□□□□ -1.93
COL8A1P27658 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3□□□□□ -1.93
COL8A1P27658 AC091152.2-201ENST00000591628 2569 ntBASIC3□□□□□ -1.93
COL8A1P27658 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
COL8A1P27658 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
COL8A1P27658 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
COL8A1P27658 AL442644.1-201ENST00000454390 3105 ntBASIC2.99□□□□□ -1.93
COL8A1P27658 RNU6-987P-201ENST00000384759 104 ntBASIC2.99□□□□□ -1.93
COL8A1P27658 RNA5SP261-201ENST00000410536 106 ntBASIC2.99□□□□□ -1.93
COL8A1P27658 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.99□□□□□ -1.93
COL8A1P27658 AL357552.1-201ENST00000445254 415 ntBASIC2.99□□□□□ -1.93
COL8A1P27658 RNU7-34P-201ENST00000459394 64 ntBASIC2.99□□□□□ -1.93
COL8A1P27658 AC024995.1-201ENST00000523014 93 ntBASIC2.99□□□□□ -1.93
COL8A1P27658 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.99□□□□□ -1.93
COL8A1P27658 MIR3186-201ENST00000577404 85 ntBASIC2.99□□□□□ -1.93
COL8A1P27658 AC103810.6-201ENST00000606708 136 ntBASIC2.99□□□□□ -1.93
COL8A1P27658 uc_338.25-201ENST00000613756 156 ntBASIC2.99□□□□□ -1.93
COL8A1P27658 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms