Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 Z83843.1-201ENST00000604070 3685 ntBASIC2.92□□□□□ -1.94
HIF3AQ9Y2N7 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
HIF3AQ9Y2N7 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.92□□□□□ -1.94
HIF3AQ9Y2N7 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC2.92□□□□□ -1.94
HIF3AQ9Y2N7 Y_RNA.93-201ENST00000363066 109 ntBASIC2.92□□□□□ -1.94
HIF3AQ9Y2N7 Y_RNA.351-201ENST00000365436 96 ntBASIC2.92□□□□□ -1.94
HIF3AQ9Y2N7 RNU6-820P-201ENST00000384273 107 ntBASIC2.92□□□□□ -1.94
HIF3AQ9Y2N7 SNORA26.7-201ENST00000391288 122 ntBASIC2.92□□□□□ -1.94
HIF3AQ9Y2N7 RNU6-938P-201ENST00000411285 103 ntBASIC2.92□□□□□ -1.94
HIF3AQ9Y2N7 RPL32P35-201ENST00000415214 394 ntBASIC2.92□□□□□ -1.94
HIF3AQ9Y2N7 AC104332.2-201ENST00000429959 156 ntBASIC2.92□□□□□ -1.94
HIF3AQ9Y2N7 DEFB131E-201ENST00000532329 154 ntBASIC2.92□□□□□ -1.94
HIF3AQ9Y2N7 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.92□□□□□ -1.94
HIF3AQ9Y2N7 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.92□□□□□ -1.94
HIF3AQ9Y2N7 AC008264.2-201ENST00000610193 3731 ntBASIC2.92□□□□□ -1.94
HIF3AQ9Y2N7 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
HIF3AQ9Y2N7 AC093010.3-201ENST00000570269 15214 ntBASIC2.92□□□□□ -1.94
HIF3AQ9Y2N7 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
HIF3AQ9Y2N7 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
HIF3AQ9Y2N7 RNA5SP50-201ENST00000363731 107 ntBASIC2.91□□□□□ -1.94
HIF3AQ9Y2N7 snoU2-30.1-201ENST00000365012 70 ntBASIC2.91□□□□□ -1.94
HIF3AQ9Y2N7 RNU6-1072P-201ENST00000384703 107 ntBASIC2.91□□□□□ -1.94
HIF3AQ9Y2N7 RNU6-443P-201ENST00000384780 107 ntBASIC2.91□□□□□ -1.94
HIF3AQ9Y2N7 CST2P1-201ENST00000425770 87 ntBASIC2.91□□□□□ -1.94
HIF3AQ9Y2N7 RNU6-893P-201ENST00000458841 100 ntBASIC2.91□□□□□ -1.94
HIF3AQ9Y2N7 RPS27P29-201ENST00000463110 252 ntBASIC2.91□□□□□ -1.94
HIF3AQ9Y2N7 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.91□□□□□ -1.94
HIF3AQ9Y2N7 AP003484.1-201ENST00000530974 250 ntBASIC2.91□□□□□ -1.94
HIF3AQ9Y2N7 AC007536.1-201ENST00000533382 349 ntBASIC2.91□□□□□ -1.94
HIF3AQ9Y2N7 AC091932.4-201ENST00000623386 200 ntBASIC2.91□□□□□ -1.94
HIF3AQ9Y2N7 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
HIF3AQ9Y2N7 RNU1-33P-201ENST00000364249 162 ntBASIC2.9□□□□□ -1.95
HIF3AQ9Y2N7 RNU4-36P-201ENST00000364294 144 ntBASIC2.9□□□□□ -1.95
HIF3AQ9Y2N7 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.9□□□□□ -1.95
HIF3AQ9Y2N7 SNORD78.1-201ENST00000390866 65 ntBASIC2.9□□□□□ -1.95
HIF3AQ9Y2N7 Y_RNA.593-201ENST00000410292 98 ntBASIC2.9□□□□□ -1.95
HIF3AQ9Y2N7 SNRPGP14-201ENST00000435400 219 ntBASIC2.9□□□□□ -1.95
HIF3AQ9Y2N7 AL445687.1-201ENST00000439946 251 ntBASIC2.9□□□□□ -1.95
HIF3AQ9Y2N7 SNORD45.4-201ENST00000516629 73 ntBASIC2.9□□□□□ -1.95
HIF3AQ9Y2N7 SNORA31.26-201ENST00000517250 137 ntBASIC2.9□□□□□ -1.95
HIF3AQ9Y2N7 AL161756.2-201ENST00000604597 246 ntBASIC2.9□□□□□ -1.95
HIF3AQ9Y2N7 DLEU2_5.2-201ENST00000610606 84 ntBASIC2.9□□□□□ -1.95
HIF3AQ9Y2N7 U4atac.1-201ENST00000618345 95 ntBASIC2.9□□□□□ -1.95
HIF3AQ9Y2N7 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
HIF3AQ9Y2N7 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.9□□□□□ -1.95
HIF3AQ9Y2N7 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
HIF3AQ9Y2N7 RNU6-1152P-201ENST00000384576 107 ntBASIC2.89□□□□□ -1.95
HIF3AQ9Y2N7 Y_RNA.531-201ENST00000384589 121 ntBASIC2.89□□□□□ -1.95
HIF3AQ9Y2N7 MIR1262-201ENST00000408276 93 ntBASIC2.89□□□□□ -1.95
HIF3AQ9Y2N7 ATP6V0E1P1-201ENST00000412537 226 ntBASIC2.89□□□□□ -1.95
HIF3AQ9Y2N7 AC109327.2-201ENST00000448339 378 ntBASIC2.89□□□□□ -1.95
HIF3AQ9Y2N7 AL163195.1-201ENST00000496941 348 ntBASIC2.89□□□□□ -1.95
HIF3AQ9Y2N7 AC113410.1-201ENST00000505029 247 ntBASIC2.89□□□□□ -1.95
HIF3AQ9Y2N7 SCARNA23-201ENST00000516060 130 ntBASIC2.89□□□□□ -1.95
HIF3AQ9Y2N7 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.89□□□□□ -1.95
HIF3AQ9Y2N7 MIR2682-201ENST00000580305 110 ntBASIC2.89□□□□□ -1.95
HIF3AQ9Y2N7 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.89□□□□□ -1.95
HIF3AQ9Y2N7 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
HIF3AQ9Y2N7 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.89□□□□□ -1.95
HIF3AQ9Y2N7 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.89□□□□□ -1.95
HIF3AQ9Y2N7 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.89□□□□□ -1.95
HIF3AQ9Y2N7 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
HIF3AQ9Y2N7 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC2.89□□□□□ -1.95
HIF3AQ9Y2N7 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HIF3AQ9Y2N7 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
HIF3AQ9Y2N7 Y_RNA.219-201ENST00000364232 113 ntBASIC2.88□□□□□ -1.95
HIF3AQ9Y2N7 RNA5SP72-201ENST00000364442 117 ntBASIC2.88□□□□□ -1.95
HIF3AQ9Y2N7 MIR490-201ENST00000384865 128 ntBASIC2.88□□□□□ -1.95
HIF3AQ9Y2N7 MIR483-201ENST00000385070 76 ntBASIC2.88□□□□□ -1.95
HIF3AQ9Y2N7 MIR1912-201ENST00000410389 80 ntBASIC2.88□□□□□ -1.95
HIF3AQ9Y2N7 RNA5SP225-201ENST00000410874 135 ntBASIC2.88□□□□□ -1.95
HIF3AQ9Y2N7 AC107083.1-201ENST00000439643 279 ntBASIC2.88□□□□□ -1.95
HIF3AQ9Y2N7 AL109933.2-201ENST00000452651 260 ntBASIC2.88□□□□□ -1.95
HIF3AQ9Y2N7 RNU7-61P-201ENST00000515897 61 ntBASIC2.88□□□□□ -1.95
HIF3AQ9Y2N7 RNU6-162P-201ENST00000516228 103 ntBASIC2.88□□□□□ -1.95
HIF3AQ9Y2N7 RNU6-56P-201ENST00000516986 93 ntBASIC2.88□□□□□ -1.95
HIF3AQ9Y2N7 SNORA70.24-201ENST00000517233 118 ntBASIC2.88□□□□□ -1.95
HIF3AQ9Y2N7 AC245166.1-201ENST00000521012 253 ntBASIC2.88□□□□□ -1.95
HIF3AQ9Y2N7 AC007179.3-201ENST00000604976 235 ntBASIC2.88□□□□□ -1.95
HIF3AQ9Y2N7 uc_338.25-201ENST00000613756 156 ntBASIC2.88□□□□□ -1.95
HIF3AQ9Y2N7 FAS-AS1.2-201ENST00000620386 170 ntBASIC2.88□□□□□ -1.95
HIF3AQ9Y2N7 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HIF3AQ9Y2N7 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.87□□□□□ -1.95
HIF3AQ9Y2N7 Y_RNA.17-201ENST00000362433 111 ntBASIC2.87□□□□□ -1.95
HIF3AQ9Y2N7 Y_RNA.290-201ENST00000364879 114 ntBASIC2.87□□□□□ -1.95
HIF3AQ9Y2N7 SNORA80E-201ENST00000384744 137 ntBASIC2.87□□□□□ -1.95
HIF3AQ9Y2N7 MIR34B-201ENST00000385076 84 ntBASIC2.87□□□□□ -1.95
HIF3AQ9Y2N7 RPL21P3-201ENST00000395517 478 ntBASIC2.87□□□□□ -1.95
HIF3AQ9Y2N7 UBBP3-201ENST00000445497 241 ntBASIC2.87□□□□□ -1.95
HIF3AQ9Y2N7 RNU6-795P-201ENST00000516323 103 ntBASIC2.87□□□□□ -1.95
HIF3AQ9Y2N7 Y_RNA.685-201ENST00000516532 108 ntBASIC2.87□□□□□ -1.95
HIF3AQ9Y2N7 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC2.87□□□□□ -1.95
HIF3AQ9Y2N7 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
HIF3AQ9Y2N7 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
HIF3AQ9Y2N7 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
HIF3AQ9Y2N7 MIR148B-201ENST00000362252 99 ntBASIC2.86□□□□□ -1.95
HIF3AQ9Y2N7 RNU6-862P-201ENST00000362804 105 ntBASIC2.86□□□□□ -1.95
HIF3AQ9Y2N7 U8.5-201ENST00000364528 136 ntBASIC2.86□□□□□ -1.95
HIF3AQ9Y2N7 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
HIF3AQ9Y2N7 MIR491-201ENST00000384877 84 ntBASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 178.4 ms