Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 AC064859.1-201ENST00000624741 174 ntBASIC2.39□□□□□ -2.03
PCIF1Q9H4Z3 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.39□□□□□ -2.03
PCIF1Q9H4Z3 MIR126-201ENST00000362291 85 ntBASIC2.38□□□□□ -2.03
PCIF1Q9H4Z3 RNU6-818P-201ENST00000364837 108 ntBASIC2.38□□□□□ -2.03
PCIF1Q9H4Z3 Y_RNA.432-201ENST00000384087 111 ntBASIC2.38□□□□□ -2.03
PCIF1Q9H4Z3 AC023449.1-201ENST00000454464 154 ntBASIC2.38□□□□□ -2.03
PCIF1Q9H4Z3 SNORA31.10-201ENST00000516482 106 ntBASIC2.38□□□□□ -2.03
PCIF1Q9H4Z3 RNU7-149P-201ENST00000516739 59 ntBASIC2.38□□□□□ -2.03
PCIF1Q9H4Z3 SNORA31.15-201ENST00000516771 132 ntBASIC2.38□□□□□ -2.03
PCIF1Q9H4Z3 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.38□□□□□ -2.03
PCIF1Q9H4Z3 AC245884.12-201ENST00000615364 59 ntBASIC2.38□□□□□ -2.03
PCIF1Q9H4Z3 MIR8054-201ENST00000620877 86 ntBASIC2.38□□□□□ -2.03
PCIF1Q9H4Z3 MTND1P7-201ENST00000632801 297 ntBASIC2.38□□□□□ -2.03
PCIF1Q9H4Z3 MIR3658-201ENST00000636291 56 ntBASIC2.38□□□□□ -2.03
PCIF1Q9H4Z3 FO624990.1-201ENST00000636373 85 ntBASIC2.38□□□□□ -2.03
PCIF1Q9H4Z3 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
PCIF1Q9H4Z3 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.37□□□□□ -2.03
PCIF1Q9H4Z3 MIR522-201ENST00000385071 87 ntBASIC2.37□□□□□ -2.03
PCIF1Q9H4Z3 RNU2-55P-201ENST00000411146 174 ntBASIC2.37□□□□□ -2.03
PCIF1Q9H4Z3 HSPE1P9-201ENST00000440046 311 ntBASIC2.37□□□□□ -2.03
PCIF1Q9H4Z3 AC069257.2-201ENST00000441819 155 ntBASIC2.37□□□□□ -2.03
PCIF1Q9H4Z3 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.37□□□□□ -2.03
PCIF1Q9H4Z3 OR9P1P-201ENST00000496431 281 ntBASIC2.37□□□□□ -2.03
PCIF1Q9H4Z3 MRPS17P9-201ENST00000511924 393 ntBASIC2.37□□□□□ -2.03
PCIF1Q9H4Z3 SNORA31.11-201ENST00000516528 139 ntBASIC2.37□□□□□ -2.03
PCIF1Q9H4Z3 RNU6-197P-201ENST00000516680 100 ntBASIC2.37□□□□□ -2.03
PCIF1Q9H4Z3 RNA5SP437-201ENST00000517249 129 ntBASIC2.37□□□□□ -2.03
PCIF1Q9H4Z3 SUB1P4-201ENST00000566062 339 ntBASIC2.37□□□□□ -2.03
PCIF1Q9H4Z3 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.37□□□□□ -2.03
PCIF1Q9H4Z3 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
PCIF1Q9H4Z3 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
PCIF1Q9H4Z3 MIRLET7G-201ENST00000362280 84 ntBASIC2.36□□□□□ -2.03
PCIF1Q9H4Z3 Y_RNA.91-201ENST00000363042 107 ntBASIC2.36□□□□□ -2.03
PCIF1Q9H4Z3 SNORD68-201ENST00000363214 84 ntBASIC2.36□□□□□ -2.03
PCIF1Q9H4Z3 SNORA4.2-201ENST00000365313 147 ntBASIC2.36□□□□□ -2.03
PCIF1Q9H4Z3 RNU6-1138P-201ENST00000365359 106 ntBASIC2.36□□□□□ -2.03
PCIF1Q9H4Z3 SNORD72-201ENST00000390994 80 ntBASIC2.36□□□□□ -2.03
PCIF1Q9H4Z3 AL023284.1-201ENST00000403956 276 ntBASIC2.36□□□□□ -2.03
PCIF1Q9H4Z3 MLLT10P1-201ENST00000418346 262 ntBASIC2.36□□□□□ -2.03
PCIF1Q9H4Z3 STAG3L5P-204ENST00000443759 179 ntBASIC2.36□□□□□ -2.03
PCIF1Q9H4Z3 AC104435.1-201ENST00000483483 166 ntBASIC2.36□□□□□ -2.03
PCIF1Q9H4Z3 RNU6-1299P-201ENST00000516316 100 ntBASIC2.36□□□□□ -2.03
PCIF1Q9H4Z3 RNA5SP200-201ENST00000516360 103 ntBASIC2.36□□□□□ -2.03
PCIF1Q9H4Z3 SNORD116-25-201ENST00000516517 92 ntBASIC2.36□□□□□ -2.03
PCIF1Q9H4Z3 MIR4529-201ENST00000578110 78 ntBASIC2.36□□□□□ -2.03
PCIF1Q9H4Z3 AL049779.4-201ENST00000604500 156 ntBASIC2.36□□□□□ -2.03
PCIF1Q9H4Z3 Y_RNA.778-201ENST00000620203 90 ntBASIC2.36□□□□□ -2.03
PCIF1Q9H4Z3 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
PCIF1Q9H4Z3 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
PCIF1Q9H4Z3 ZNF720P1-201ENST00000562403 1939 ntBASIC2.36□□□□□ -2.03
PCIF1Q9H4Z3 ZNF702P-202ENST00000434269 1966 ntBASIC2.36□□□□□ -2.03
PCIF1Q9H4Z3 AP006437.1-201ENST00000641440 3685 ntBASIC2.36□□□□□ -2.03
PCIF1Q9H4Z3 AC005336.3-201ENST00000623833 2679 ntBASIC2.35□□□□□ -2.03
PCIF1Q9H4Z3 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC2.35□□□□□ -2.03
PCIF1Q9H4Z3 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
PCIF1Q9H4Z3 RNU6-151P-201ENST00000364158 107 ntBASIC2.35□□□□□ -2.03
PCIF1Q9H4Z3 SNORA67.3-201ENST00000384366 140 ntBASIC2.35□□□□□ -2.03
PCIF1Q9H4Z3 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
PCIF1Q9H4Z3 RNU6-440P-201ENST00000390882 105 ntBASIC2.35□□□□□ -2.03
PCIF1Q9H4Z3 SNORA79-201ENST00000408376 140 ntBASIC2.35□□□□□ -2.03
PCIF1Q9H4Z3 SUMO1P4-201ENST00000429430 302 ntBASIC2.35□□□□□ -2.03
PCIF1Q9H4Z3 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.35□□□□□ -2.03
PCIF1Q9H4Z3 RNU1-104P-201ENST00000517280 175 ntBASIC2.35□□□□□ -2.03
PCIF1Q9H4Z3 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.35□□□□□ -2.03
PCIF1Q9H4Z3 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC2.35□□□□□ -2.03
PCIF1Q9H4Z3 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC2.35□□□□□ -2.03
PCIF1Q9H4Z3 AC008507.4-201ENST00000585464 127 ntBASIC2.35□□□□□ -2.03
PCIF1Q9H4Z3 DNAJC19P2-201ENST00000593340 302 ntBASIC2.35□□□□□ -2.03
PCIF1Q9H4Z3 Pinc.1-201ENST00000616452 154 ntBASIC2.35□□□□□ -2.03
PCIF1Q9H4Z3 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.35□□□□□ -2.03
PCIF1Q9H4Z3 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.35□□□□□ -2.03
PCIF1Q9H4Z3 ZNF658B-202ENST00000615961 3375 ntBASIC2.35□□□□□ -2.03
PCIF1Q9H4Z3 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.34□□□□□ -2.03
PCIF1Q9H4Z3 RNU6-112P-201ENST00000363599 104 ntBASIC2.34□□□□□ -2.03
PCIF1Q9H4Z3 U8.5-201ENST00000364528 136 ntBASIC2.34□□□□□ -2.03
PCIF1Q9H4Z3 Y_RNA.265-201ENST00000364677 108 ntBASIC2.34□□□□□ -2.03
PCIF1Q9H4Z3 Y_RNA.337-201ENST00000365312 102 ntBASIC2.34□□□□□ -2.03
PCIF1Q9H4Z3 RNU6-296P-201ENST00000384608 107 ntBASIC2.34□□□□□ -2.03
PCIF1Q9H4Z3 RNU6-768P-201ENST00000384683 107 ntBASIC2.34□□□□□ -2.03
PCIF1Q9H4Z3 SNORA80E-201ENST00000384744 137 ntBASIC2.34□□□□□ -2.03
PCIF1Q9H4Z3 RNU6-131P-201ENST00000391144 107 ntBASIC2.34□□□□□ -2.03
PCIF1Q9H4Z3 RN7SKP223-201ENST00000410582 62 ntBASIC2.34□□□□□ -2.03
PCIF1Q9H4Z3 AL158823.1-201ENST00000418441 478 ntBASIC2.34□□□□□ -2.03
PCIF1Q9H4Z3 SCARNA16.3-201ENST00000516595 184 ntBASIC2.34□□□□□ -2.03
PCIF1Q9H4Z3 AL160236.1-201ENST00000556317 195 ntBASIC2.34□□□□□ -2.03
PCIF1Q9H4Z3 MIR4762-201ENST00000585261 75 ntBASIC2.34□□□□□ -2.03
PCIF1Q9H4Z3 AC097639.2-201ENST00000603159 172 ntBASIC2.34□□□□□ -2.03
PCIF1Q9H4Z3 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC2.34□□□□□ -2.03
PCIF1Q9H4Z3 MIR6132-201ENST00000622083 109 ntBASIC2.34□□□□□ -2.03
PCIF1Q9H4Z3 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
PCIF1Q9H4Z3 Y_RNA.634-201ENST00000364811 113 ntBASIC2.33□□□□□ -2.04
PCIF1Q9H4Z3 RNU4-11P-201ENST00000365287 132 ntBASIC2.33□□□□□ -2.04
PCIF1Q9H4Z3 Y_RNA.400-201ENST00000383963 111 ntBASIC2.33□□□□□ -2.04
PCIF1Q9H4Z3 Y_RNA.486-201ENST00000384398 107 ntBASIC2.33□□□□□ -2.04
PCIF1Q9H4Z3 SNORA64-201ENST00000384674 134 ntBASIC2.33□□□□□ -2.04
PCIF1Q9H4Z3 RNA5SP482-201ENST00000391269 118 ntBASIC2.33□□□□□ -2.04
PCIF1Q9H4Z3 RNA5SP425-201ENST00000410336 112 ntBASIC2.33□□□□□ -2.04
PCIF1Q9H4Z3 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.33□□□□□ -2.04
PCIF1Q9H4Z3 FTH1P12-201ENST00000432137 551 ntBASIC2.33□□□□□ -2.04
PCIF1Q9H4Z3 AL392103.1-201ENST00000447000 198 ntBASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 117.1 ms