Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AL513423.1-201ENST00000621695 132 ntBASIC2.92□□□□□ -1.94
TRAIPQ9BWF2 AC027279.3-201ENST00000625055 122 ntBASIC2.92□□□□□ -1.94
TRAIPQ9BWF2 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.92□□□□□ -1.94
TRAIPQ9BWF2 AC080100.1-201ENST00000624239 5356 ntBASIC2.92□□□□□ -1.94
TRAIPQ9BWF2 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.91□□□□□ -1.94
TRAIPQ9BWF2 Y_RNA.336-201ENST00000365307 109 ntBASIC2.91□□□□□ -1.94
TRAIPQ9BWF2 MIR891A-201ENST00000401237 79 ntBASIC2.91□□□□□ -1.94
TRAIPQ9BWF2 CALM2P4-201ENST00000430810 426 ntBASIC2.91□□□□□ -1.94
TRAIPQ9BWF2 AL513328.1-201ENST00000446460 224 ntBASIC2.91□□□□□ -1.94
TRAIPQ9BWF2 NDUFA4P2-201ENST00000489989 244 ntBASIC2.91□□□□□ -1.94
TRAIPQ9BWF2 AC008507.4-201ENST00000585464 127 ntBASIC2.91□□□□□ -1.94
TRAIPQ9BWF2 MIR6817-201ENST00000615588 66 ntBASIC2.91□□□□□ -1.94
TRAIPQ9BWF2 SNORD3E-202ENST00000627253 216 ntBASIC2.91□□□□□ -1.94
TRAIPQ9BWF2 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
TRAIPQ9BWF2 RNU6-661P-201ENST00000362409 107 ntBASIC2.9□□□□□ -1.95
TRAIPQ9BWF2 RNU6-424P-201ENST00000384367 105 ntBASIC2.9□□□□□ -1.95
TRAIPQ9BWF2 SNORA80E-201ENST00000384744 137 ntBASIC2.9□□□□□ -1.95
TRAIPQ9BWF2 RNA5SP233-201ENST00000459153 113 ntBASIC2.9□□□□□ -1.95
TRAIPQ9BWF2 RNU6-365P-201ENST00000517113 106 ntBASIC2.9□□□□□ -1.95
TRAIPQ9BWF2 MIR3945-201ENST00000581853 98 ntBASIC2.9□□□□□ -1.95
TRAIPQ9BWF2 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
TRAIPQ9BWF2 SNORD45.3-201ENST00000363836 72 ntBASIC2.89□□□□□ -1.95
TRAIPQ9BWF2 U8.16-201ENST00000391279 133 ntBASIC2.89□□□□□ -1.95
TRAIPQ9BWF2 MIR1267-201ENST00000408723 78 ntBASIC2.89□□□□□ -1.95
TRAIPQ9BWF2 SNRPGP8-201ENST00000454064 226 ntBASIC2.89□□□□□ -1.95
TRAIPQ9BWF2 AC114811.1-201ENST00000507207 168 ntBASIC2.89□□□□□ -1.95
TRAIPQ9BWF2 MRPS17P9-201ENST00000511924 393 ntBASIC2.89□□□□□ -1.95
TRAIPQ9BWF2 SNORA44.1-201ENST00000517031 108 ntBASIC2.89□□□□□ -1.95
TRAIPQ9BWF2 AC121758.2-201ENST00000553271 193 ntBASIC2.89□□□□□ -1.95
TRAIPQ9BWF2 MIR4431-201ENST00000579990 94 ntBASIC2.89□□□□□ -1.95
TRAIPQ9BWF2 RNU6-1123P-201ENST00000362347 106 ntBASIC2.88□□□□□ -1.95
TRAIPQ9BWF2 SNORD50B-201ENST00000364995 70 ntBASIC2.88□□□□□ -1.95
TRAIPQ9BWF2 RNU6-886P-201ENST00000384319 105 ntBASIC2.88□□□□□ -1.95
TRAIPQ9BWF2 AC005840.1-201ENST00000498412 377 ntBASIC2.88□□□□□ -1.95
TRAIPQ9BWF2 AC107027.2-201ENST00000512197 115 ntBASIC2.88□□□□□ -1.95
TRAIPQ9BWF2 RNA5SP153-201ENST00000516498 76 ntBASIC2.88□□□□□ -1.95
TRAIPQ9BWF2 AL627230.6-201ENST00000611129 280 ntBASIC2.88□□□□□ -1.95
TRAIPQ9BWF2 MIR6840-201ENST00000611937 71 ntBASIC2.88□□□□□ -1.95
TRAIPQ9BWF2 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
TRAIPQ9BWF2 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
TRAIPQ9BWF2 MT-TR-201ENST00000387439 65 ntBASIC2.87□□□□□ -1.95
TRAIPQ9BWF2 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
TRAIPQ9BWF2 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
TRAIPQ9BWF2 AC006461.1-201ENST00000412637 326 ntBASIC2.87□□□□□ -1.95
TRAIPQ9BWF2 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.87□□□□□ -1.95
TRAIPQ9BWF2 RNA5SP148-201ENST00000516527 94 ntBASIC2.87□□□□□ -1.95
TRAIPQ9BWF2 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.87□□□□□ -1.95
TRAIPQ9BWF2 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.86□□□□□ -1.95
TRAIPQ9BWF2 MIR424-201ENST00000362227 98 ntBASIC2.86□□□□□ -1.95
TRAIPQ9BWF2 RNU6-833P-201ENST00000363486 107 ntBASIC2.86□□□□□ -1.95
TRAIPQ9BWF2 RNU6-643P-201ENST00000384018 107 ntBASIC2.86□□□□□ -1.95
TRAIPQ9BWF2 SNORD38C-201ENST00000384381 69 ntBASIC2.86□□□□□ -1.95
TRAIPQ9BWF2 RNU4-43P-201ENST00000410628 137 ntBASIC2.86□□□□□ -1.95
TRAIPQ9BWF2 RN7SKP51-201ENST00000410781 304 ntBASIC2.86□□□□□ -1.95
TRAIPQ9BWF2 JTBP1-201ENST00000441314 247 ntBASIC2.86□□□□□ -1.95
TRAIPQ9BWF2 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.85□□□□□ -1.95
TRAIPQ9BWF2 MIR660-201ENST00000385235 97 ntBASIC2.85□□□□□ -1.95
TRAIPQ9BWF2 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
TRAIPQ9BWF2 SEPT7P4-201ENST00000437076 306 ntBASIC2.85□□□□□ -1.95
TRAIPQ9BWF2 RPS27P21-201ENST00000486977 252 ntBASIC2.85□□□□□ -1.95
TRAIPQ9BWF2 RNU6-504P-201ENST00000516568 104 ntBASIC2.85□□□□□ -1.95
TRAIPQ9BWF2 RNU6-197P-201ENST00000516680 100 ntBASIC2.85□□□□□ -1.95
TRAIPQ9BWF2 RNU6-1116P-201ENST00000517269 99 ntBASIC2.85□□□□□ -1.95
TRAIPQ9BWF2 MIR4435-1-201ENST00000582552 80 ntBASIC2.85□□□□□ -1.95
TRAIPQ9BWF2 MIR8074-201ENST00000615081 81 ntBASIC2.85□□□□□ -1.95
TRAIPQ9BWF2 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.84□□□□□ -1.95
TRAIPQ9BWF2 Y_RNA.180-201ENST00000363867 113 ntBASIC2.84□□□□□ -1.95
TRAIPQ9BWF2 Y_RNA.521-201ENST00000384560 114 ntBASIC2.84□□□□□ -1.95
TRAIPQ9BWF2 MIR27B-201ENST00000385129 97 ntBASIC2.84□□□□□ -1.95
TRAIPQ9BWF2 SNORD72-201ENST00000390994 80 ntBASIC2.84□□□□□ -1.95
TRAIPQ9BWF2 RN7SKP192-201ENST00000411291 327 ntBASIC2.84□□□□□ -1.95
TRAIPQ9BWF2 HMGN2P19-201ENST00000425149 265 ntBASIC2.84□□□□□ -1.95
TRAIPQ9BWF2 RNU6-561P-201ENST00000516222 102 ntBASIC2.84□□□□□ -1.95
TRAIPQ9BWF2 IGLV3-17-201ENST00000519099 244 ntBASIC2.84□□□□□ -1.95
TRAIPQ9BWF2 AL160236.1-201ENST00000556317 195 ntBASIC2.84□□□□□ -1.95
TRAIPQ9BWF2 AC022254.1-201ENST00000567857 235 ntBASIC2.84□□□□□ -1.95
TRAIPQ9BWF2 MIR3670-2-201ENST00000582974 65 ntBASIC2.84□□□□□ -1.95
TRAIPQ9BWF2 MIR3670-1-201ENST00000584160 65 ntBASIC2.84□□□□□ -1.95
TRAIPQ9BWF2 MIR3670-3-201ENST00000584855 65 ntBASIC2.84□□□□□ -1.95
TRAIPQ9BWF2 MIR3670-4-201ENST00000612260 65 ntBASIC2.84□□□□□ -1.95
TRAIPQ9BWF2 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
TRAIPQ9BWF2 AL596028.1-201ENST00000326971 197 ntBASIC2.83□□□□□ -1.96
TRAIPQ9BWF2 MIR452-201ENST00000385020 85 ntBASIC2.83□□□□□ -1.96
TRAIPQ9BWF2 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.83□□□□□ -1.96
TRAIPQ9BWF2 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
TRAIPQ9BWF2 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
TRAIPQ9BWF2 MIRLET7C-201ENST00000362160 84 ntBASIC2.82□□□□□ -1.96
TRAIPQ9BWF2 Y_RNA.337-201ENST00000365312 102 ntBASIC2.82□□□□□ -1.96
TRAIPQ9BWF2 RNA5SP210-201ENST00000391034 120 ntBASIC2.82□□□□□ -1.96
TRAIPQ9BWF2 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC2.82□□□□□ -1.96
TRAIPQ9BWF2 AC099513.1-201ENST00000490423 301 ntBASIC2.82□□□□□ -1.96
TRAIPQ9BWF2 MIR4635-201ENST00000583759 79 ntBASIC2.82□□□□□ -1.96
TRAIPQ9BWF2 AL590808.1-201ENST00000618696 141 ntBASIC2.82□□□□□ -1.96
TRAIPQ9BWF2 U4.3-201ENST00000621047 82 ntBASIC2.82□□□□□ -1.96
TRAIPQ9BWF2 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.81□□□□□ -1.96
TRAIPQ9BWF2 Y_RNA.634-201ENST00000364811 113 ntBASIC2.81□□□□□ -1.96
TRAIPQ9BWF2 RNU6-484P-201ENST00000384016 107 ntBASIC2.81□□□□□ -1.96
TRAIPQ9BWF2 Y_RNA.486-201ENST00000384398 107 ntBASIC2.81□□□□□ -1.96
TRAIPQ9BWF2 SNORD116-25-201ENST00000516517 92 ntBASIC2.81□□□□□ -1.96
TRAIPQ9BWF2 DEFB122-202ENST00000569013 197 ntBASIC2.81□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms