Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 RNU6-338P-201ENST00000383888 105 ntBASIC2.12□□□□□ -2.07
HPS3Q969F9 Y_RNA.539-201ENST00000384635 107 ntBASIC2.12□□□□□ -2.07
HPS3Q969F9 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.12□□□□□ -2.07
HPS3Q969F9 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.12□□□□□ -2.07
HPS3Q969F9 RNU6-111P-201ENST00000517179 105 ntBASIC2.12□□□□□ -2.07
HPS3Q969F9 AC022254.1-201ENST00000567857 235 ntBASIC2.12□□□□□ -2.07
HPS3Q969F9 MIR4724-201ENST00000579485 89 ntBASIC2.12□□□□□ -2.07
HPS3Q969F9 MIR3935-201ENST00000583472 104 ntBASIC2.12□□□□□ -2.07
HPS3Q969F9 JPX_2.1-201ENST00000614161 69 ntBASIC2.12□□□□□ -2.07
HPS3Q969F9 Y_RNA.802-201ENST00000614892 130 ntBASIC2.12□□□□□ -2.07
HPS3Q969F9 uc_338.20-201ENST00000621563 178 ntBASIC2.12□□□□□ -2.07
HPS3Q969F9 Y_RNA.269-201ENST00000364685 89 ntBASIC2.11□□□□□ -2.07
HPS3Q969F9 RNU6-1031P-201ENST00000384773 107 ntBASIC2.11□□□□□ -2.07
HPS3Q969F9 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.11□□□□□ -2.07
HPS3Q969F9 MIR5688-201ENST00000580619 83 ntBASIC2.11□□□□□ -2.07
HPS3Q969F9 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.11□□□□□ -2.07
HPS3Q969F9 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.1□□□□□ -2.07
HPS3Q969F9 RNU6-661P-201ENST00000362409 107 ntBASIC2.1□□□□□ -2.07
HPS3Q969F9 Y_RNA.76-201ENST00000362931 109 ntBASIC2.1□□□□□ -2.07
HPS3Q969F9 RNU6-379P-201ENST00000363813 104 ntBASIC2.1□□□□□ -2.07
HPS3Q969F9 Y_RNA.515-201ENST00000384535 112 ntBASIC2.1□□□□□ -2.07
HPS3Q969F9 Y_RNA.552-201ENST00000384665 112 ntBASIC2.1□□□□□ -2.07
HPS3Q969F9 SNORA8.3-201ENST00000384679 139 ntBASIC2.1□□□□□ -2.07
HPS3Q969F9 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
HPS3Q969F9 AC019129.1-201ENST00000403786 261 ntBASIC2.1□□□□□ -2.07
HPS3Q969F9 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.1□□□□□ -2.07
HPS3Q969F9 RNU2-40P-201ENST00000410833 196 ntBASIC2.1□□□□□ -2.07
HPS3Q969F9 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.1□□□□□ -2.07
HPS3Q969F9 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC2.1□□□□□ -2.07
HPS3Q969F9 HMGN1P7-201ENST00000491722 313 ntBASIC2.1□□□□□ -2.07
HPS3Q969F9 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC2.1□□□□□ -2.07
HPS3Q969F9 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
HPS3Q969F9 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.1□□□□□ -2.07
HPS3Q969F9 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
HPS3Q969F9 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.09□□□□□ -2.07
HPS3Q969F9 RNU4-41P-201ENST00000364426 143 ntBASIC2.09□□□□□ -2.07
HPS3Q969F9 Y_RNA.262-201ENST00000364641 102 ntBASIC2.09□□□□□ -2.07
HPS3Q969F9 Y_RNA.304-201ENST00000365011 112 ntBASIC2.09□□□□□ -2.07
HPS3Q969F9 MIR526A2-201ENST00000390198 65 ntBASIC2.09□□□□□ -2.07
HPS3Q969F9 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
HPS3Q969F9 SNORA26.9-201ENST00000391322 122 ntBASIC2.09□□□□□ -2.07
HPS3Q969F9 AC023449.1-201ENST00000454464 154 ntBASIC2.09□□□□□ -2.07
HPS3Q969F9 HMGN2P23-201ENST00000456759 269 ntBASIC2.09□□□□□ -2.07
HPS3Q969F9 RPS29P11-201ENST00000496507 171 ntBASIC2.09□□□□□ -2.07
HPS3Q969F9 RNU6-1007P-201ENST00000516586 107 ntBASIC2.09□□□□□ -2.07
HPS3Q969F9 RNU6-295P-201ENST00000516901 104 ntBASIC2.09□□□□□ -2.07
HPS3Q969F9 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
HPS3Q969F9 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
HPS3Q969F9 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
HPS3Q969F9 MIR126-201ENST00000362291 85 ntBASIC2.08□□□□□ -2.08
HPS3Q969F9 SNORD68-201ENST00000363214 84 ntBASIC2.08□□□□□ -2.08
HPS3Q969F9 Y_RNA.253-201ENST00000364562 112 ntBASIC2.08□□□□□ -2.08
HPS3Q969F9 SUMO2P12-201ENST00000405924 140 ntBASIC2.08□□□□□ -2.08
HPS3Q969F9 RPL30P13-201ENST00000418873 348 ntBASIC2.08□□□□□ -2.08
HPS3Q969F9 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.08□□□□□ -2.08
HPS3Q969F9 COX6CP14-201ENST00000469580 174 ntBASIC2.08□□□□□ -2.08
HPS3Q969F9 SNORD116-28-201ENST00000516123 91 ntBASIC2.08□□□□□ -2.08
HPS3Q969F9 AL591926.4-201ENST00000616895 298 ntBASIC2.08□□□□□ -2.08
HPS3Q969F9 AC141273.2-201ENST00000618989 130 ntBASIC2.08□□□□□ -2.08
HPS3Q969F9 AL365265.1-201ENST00000621045 234 ntBASIC2.08□□□□□ -2.08
HPS3Q969F9 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
HPS3Q969F9 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
HPS3Q969F9 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
HPS3Q969F9 RNA5SP496-201ENST00000391240 109 ntBASIC2.07□□□□□ -2.08
HPS3Q969F9 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.07□□□□□ -2.08
HPS3Q969F9 MLLT10P1-201ENST00000418346 262 ntBASIC2.07□□□□□ -2.08
HPS3Q969F9 HMGN2P19-201ENST00000425149 265 ntBASIC2.07□□□□□ -2.08
HPS3Q969F9 SNRPGP10-201ENST00000432323 225 ntBASIC2.07□□□□□ -2.08
HPS3Q969F9 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.07□□□□□ -2.08
HPS3Q969F9 RNA5SP364-201ENST00000516938 78 ntBASIC2.07□□□□□ -2.08
HPS3Q969F9 SNORA44.1-201ENST00000517031 108 ntBASIC2.07□□□□□ -2.08
HPS3Q969F9 ZNF355P-201ENST00000427301 3216 ntBASIC2.07□□□□□ -2.08
HPS3Q969F9 RNY1-201ENST00000364228 113 ntBASIC2.06□□□□□ -2.08
HPS3Q969F9 RNY4P28-201ENST00000365281 93 ntBASIC2.06□□□□□ -2.08
HPS3Q969F9 RNU6-131P-201ENST00000391144 107 ntBASIC2.06□□□□□ -2.08
HPS3Q969F9 RNU6-847P-201ENST00000411115 108 ntBASIC2.06□□□□□ -2.08
HPS3Q969F9 Z98949.2-201ENST00000440996 144 ntBASIC2.06□□□□□ -2.08
HPS3Q969F9 OR9P1P-201ENST00000496431 281 ntBASIC2.06□□□□□ -2.08
HPS3Q969F9 RNU6-388P-201ENST00000517012 105 ntBASIC2.06□□□□□ -2.08
HPS3Q969F9 RNU6-389P-201ENST00000517048 105 ntBASIC2.06□□□□□ -2.08
HPS3Q969F9 AC021506.2-201ENST00000612354 169 ntBASIC2.06□□□□□ -2.08
HPS3Q969F9 RNU6-1209P-201ENST00000363655 107 ntBASIC2.05□□□□□ -2.08
HPS3Q969F9 MIR626-201ENST00000385032 94 ntBASIC2.05□□□□□ -2.08
HPS3Q969F9 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
HPS3Q969F9 MIR1267-201ENST00000408723 78 ntBASIC2.05□□□□□ -2.08
HPS3Q969F9 RNU6-383P-201ENST00000410864 94 ntBASIC2.05□□□□□ -2.08
HPS3Q969F9 RNA5SP489-201ENST00000410986 109 ntBASIC2.05□□□□□ -2.08
HPS3Q969F9 JTBP1-201ENST00000441314 247 ntBASIC2.05□□□□□ -2.08
HPS3Q969F9 AC100767.1-201ENST00000528178 123 ntBASIC2.05□□□□□ -2.08
HPS3Q969F9 CARD18-203ENST00000532895 422 ntTSL 2 BASIC2.05□□□□□ -2.08
HPS3Q969F9 RPL23AP91-201ENST00000569211 455 ntBASIC2.05□□□□□ -2.08
HPS3Q969F9 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.05□□□□□ -2.08
HPS3Q969F9 AC012493.3-201ENST00000604494 112 ntBASIC2.05□□□□□ -2.08
HPS3Q969F9 MIR8074-201ENST00000615081 81 ntBASIC2.05□□□□□ -2.08
HPS3Q969F9 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
HPS3Q969F9 Y_RNA.199-201ENST00000364014 102 ntBASIC2.04□□□□□ -2.08
HPS3Q969F9 Y_RNA.200-201ENST00000364018 102 ntBASIC2.04□□□□□ -2.08
HPS3Q969F9 MIR583-201ENST00000384846 75 ntBASIC2.04□□□□□ -2.08
HPS3Q969F9 MIR9-3-201ENST00000385084 90 ntBASIC2.04□□□□□ -2.08
HPS3Q969F9 MIR1298-201ENST00000408783 112 ntBASIC2.04□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 627.2 ms