Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 SNORA72.7-201ENST00000516349 94 ntBASIC2.76□□□□□ -1.97
UBE3DQ7Z6J8 SNORD45.4-201ENST00000516629 73 ntBASIC2.76□□□□□ -1.97
UBE3DQ7Z6J8 RNU7-70P-201ENST00000516941 66 ntBASIC2.76□□□□□ -1.97
UBE3DQ7Z6J8 SNORA70.24-201ENST00000517233 118 ntBASIC2.76□□□□□ -1.97
UBE3DQ7Z6J8 AL161756.2-201ENST00000604597 246 ntBASIC2.76□□□□□ -1.97
UBE3DQ7Z6J8 SNORA28-201ENST00000606769 126 ntBASIC2.76□□□□□ -1.97
UBE3DQ7Z6J8 uc_338.28-201ENST00000612082 187 ntBASIC2.76□□□□□ -1.97
UBE3DQ7Z6J8 AL162274.2-201ENST00000614406 332 ntBASIC2.76□□□□□ -1.97
UBE3DQ7Z6J8 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.76□□□□□ -1.97
UBE3DQ7Z6J8 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.76□□□□□ -1.97
UBE3DQ7Z6J8 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
UBE3DQ7Z6J8 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
UBE3DQ7Z6J8 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
UBE3DQ7Z6J8 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
UBE3DQ7Z6J8 Y_RNA.213-201ENST00000364178 111 ntBASIC2.75□□□□□ -1.97
UBE3DQ7Z6J8 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
UBE3DQ7Z6J8 Y_RNA.454-201ENST00000384224 113 ntBASIC2.75□□□□□ -1.97
UBE3DQ7Z6J8 Y_RNA.547-201ENST00000384654 119 ntBASIC2.75□□□□□ -1.97
UBE3DQ7Z6J8 AL445646.1-201ENST00000431784 216 ntBASIC2.75□□□□□ -1.97
UBE3DQ7Z6J8 RNU7-25P-201ENST00000516544 62 ntBASIC2.75□□□□□ -1.97
UBE3DQ7Z6J8 MIR3200-201ENST00000580767 85 ntBASIC2.75□□□□□ -1.97
UBE3DQ7Z6J8 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.75□□□□□ -1.97
UBE3DQ7Z6J8 AC006254.2-201ENST00000603259 279 ntBASIC2.75□□□□□ -1.97
UBE3DQ7Z6J8 MIR376A2-201ENST00000636782 80 ntBASIC2.75□□□□□ -1.97
UBE3DQ7Z6J8 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC2.75□□□□□ -1.97
UBE3DQ7Z6J8 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC2.75□□□□□ -1.97
UBE3DQ7Z6J8 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.75□□□□□ -1.97
UBE3DQ7Z6J8 AC096644.4-201ENST00000563417 2912 ntBASIC2.74□□□□□ -1.97
UBE3DQ7Z6J8 RNY4P6-201ENST00000363667 96 ntBASIC2.74□□□□□ -1.97
UBE3DQ7Z6J8 Y_RNA.265-201ENST00000364677 108 ntBASIC2.74□□□□□ -1.97
UBE3DQ7Z6J8 SNORA9.2-201ENST00000365361 133 ntBASIC2.74□□□□□ -1.97
UBE3DQ7Z6J8 SNORA44-201ENST00000384584 132 ntBASIC2.74□□□□□ -1.97
UBE3DQ7Z6J8 SNORA80E-201ENST00000384744 137 ntBASIC2.74□□□□□ -1.97
UBE3DQ7Z6J8 MIR759-201ENST00000390224 91 ntBASIC2.74□□□□□ -1.97
UBE3DQ7Z6J8 SNORA48.2-201ENST00000390926 124 ntBASIC2.74□□□□□ -1.97
UBE3DQ7Z6J8 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.74□□□□□ -1.97
UBE3DQ7Z6J8 AL139132.1-201ENST00000431587 344 ntBASIC2.74□□□□□ -1.97
UBE3DQ7Z6J8 AL109933.2-201ENST00000452651 260 ntBASIC2.74□□□□□ -1.97
UBE3DQ7Z6J8 RNU7-80P-201ENST00000459562 61 ntBASIC2.74□□□□□ -1.97
UBE3DQ7Z6J8 TRBV12-1-201ENST00000479785 344 ntBASIC2.74□□□□□ -1.97
UBE3DQ7Z6J8 MIR4778-201ENST00000577635 80 ntBASIC2.74□□□□□ -1.97
UBE3DQ7Z6J8 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.74□□□□□ -1.97
UBE3DQ7Z6J8 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC2.74□□□□□ -1.97
UBE3DQ7Z6J8 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
UBE3DQ7Z6J8 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
UBE3DQ7Z6J8 RNU6-349P-201ENST00000362402 107 ntBASIC2.73□□□□□ -1.97
UBE3DQ7Z6J8 RNU6-766P-201ENST00000362478 107 ntBASIC2.73□□□□□ -1.97
UBE3DQ7Z6J8 RNU6-690P-201ENST00000365242 106 ntBASIC2.73□□□□□ -1.97
UBE3DQ7Z6J8 RNY1P6-201ENST00000384193 109 ntBASIC2.73□□□□□ -1.97
UBE3DQ7Z6J8 MIR491-201ENST00000384877 84 ntBASIC2.73□□□□□ -1.97
UBE3DQ7Z6J8 AL627390.1-201ENST00000396055 340 ntBASIC2.73□□□□□ -1.97
UBE3DQ7Z6J8 MIR1302-5-201ENST00000408164 150 ntBASIC2.73□□□□□ -1.97
UBE3DQ7Z6J8 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.73□□□□□ -1.97
UBE3DQ7Z6J8 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.73□□□□□ -1.97
UBE3DQ7Z6J8 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.73□□□□□ -1.97
UBE3DQ7Z6J8 RNU6-240P-201ENST00000516098 97 ntBASIC2.73□□□□□ -1.97
UBE3DQ7Z6J8 AC069114.2-201ENST00000604699 304 ntBASIC2.73□□□□□ -1.97
UBE3DQ7Z6J8 RNU6-94P-201ENST00000607728 107 ntBASIC2.73□□□□□ -1.97
UBE3DQ7Z6J8 AC106754.2-201ENST00000623006 233 ntBASIC2.73□□□□□ -1.97
UBE3DQ7Z6J8 AC027279.3-201ENST00000625055 122 ntBASIC2.73□□□□□ -1.97
UBE3DQ7Z6J8 AL589743.1-201ENST00000551932 2712 ntBASIC2.73□□□□□ -1.97
UBE3DQ7Z6J8 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.73□□□□□ -1.97
UBE3DQ7Z6J8 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
UBE3DQ7Z6J8 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.73□□□□□ -1.97
UBE3DQ7Z6J8 MIR450A1-201ENST00000362262 91 ntBASIC2.72□□□□□ -1.97
UBE3DQ7Z6J8 RNU1-133P-201ENST00000364867 167 ntBASIC2.72□□□□□ -1.97
UBE3DQ7Z6J8 Y_RNA.323-201ENST00000365157 109 ntBASIC2.72□□□□□ -1.97
UBE3DQ7Z6J8 Y_RNA.440-201ENST00000384120 114 ntBASIC2.72□□□□□ -1.97
UBE3DQ7Z6J8 SNORD38C-201ENST00000384381 69 ntBASIC2.72□□□□□ -1.97
UBE3DQ7Z6J8 MIR128-1-201ENST00000384921 82 ntBASIC2.72□□□□□ -1.97
UBE3DQ7Z6J8 MIR181B1-201ENST00000385240 110 ntBASIC2.72□□□□□ -1.97
UBE3DQ7Z6J8 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
UBE3DQ7Z6J8 RNU6-554P-201ENST00000410466 106 ntBASIC2.72□□□□□ -1.97
UBE3DQ7Z6J8 AC022018.1-201ENST00000430685 241 ntBASIC2.72□□□□□ -1.97
UBE3DQ7Z6J8 Y_RNA.677-201ENST00000516401 85 ntBASIC2.72□□□□□ -1.97
UBE3DQ7Z6J8 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
UBE3DQ7Z6J8 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
UBE3DQ7Z6J8 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
UBE3DQ7Z6J8 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
UBE3DQ7Z6J8 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
UBE3DQ7Z6J8 RNU1-58P-201ENST00000362413 163 ntBASIC2.71□□□□□ -1.98
UBE3DQ7Z6J8 Y_RNA.163-201ENST00000363702 113 ntBASIC2.71□□□□□ -1.98
UBE3DQ7Z6J8 RNU6-1019P-201ENST00000364424 107 ntBASIC2.71□□□□□ -1.98
UBE3DQ7Z6J8 RNU6-1113P-201ENST00000384348 107 ntBASIC2.71□□□□□ -1.98
UBE3DQ7Z6J8 RNU6-851P-201ENST00000384565 107 ntBASIC2.71□□□□□ -1.98
UBE3DQ7Z6J8 RNU6-950P-201ENST00000384651 107 ntBASIC2.71□□□□□ -1.98
UBE3DQ7Z6J8 MIR512-1-201ENST00000384913 84 ntBASIC2.71□□□□□ -1.98
UBE3DQ7Z6J8 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.71□□□□□ -1.98
UBE3DQ7Z6J8 EEF1A1P41-201ENST00000414667 207 ntBASIC2.71□□□□□ -1.98
UBE3DQ7Z6J8 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC2.71□□□□□ -1.98
UBE3DQ7Z6J8 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.71□□□□□ -1.98
UBE3DQ7Z6J8 AC092427.1-202ENST00000430569 476 ntBASIC2.71□□□□□ -1.98
UBE3DQ7Z6J8 RN7SL499P-201ENST00000481141 276 ntBASIC2.71□□□□□ -1.98
UBE3DQ7Z6J8 SCARNA13-201ENST00000516672 275 ntBASIC2.71□□□□□ -1.98
UBE3DQ7Z6J8 AP003484.1-201ENST00000530974 250 ntBASIC2.71□□□□□ -1.98
UBE3DQ7Z6J8 AC074050.1-201ENST00000563247 211 ntBASIC2.71□□□□□ -1.98
UBE3DQ7Z6J8 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.71□□□□□ -1.98
UBE3DQ7Z6J8 AC009831.4-201ENST00000620744 325 ntBASIC2.71□□□□□ -1.98
UBE3DQ7Z6J8 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
UBE3DQ7Z6J8 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.71□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 208.2 ms