Protein–RNA interactions for Protein: Q13133

NR1H3, Oxysterols receptor LXR-alpha, humanhuman

Predictions only

Length 447 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H3Q13133 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.39□□□□□ -1.87
NR1H3Q13133 AC087499.4-201ENST00000448505 178 ntBASIC3.39□□□□□ -1.87
NR1H3Q13133 RPL39P34-201ENST00000477141 156 ntBASIC3.39□□□□□ -1.87
NR1H3Q13133 DLEU2_5.2-201ENST00000610606 84 ntBASIC3.39□□□□□ -1.87
NR1H3Q13133 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.39□□□□□ -1.87
NR1H3Q13133 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC3.38□□□□□ -1.87
NR1H3Q13133 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
NR1H3Q13133 MIR422A-201ENST00000362286 90 ntBASIC3.38□□□□□ -1.87
NR1H3Q13133 Y_RNA.328-201ENST00000365208 113 ntBASIC3.38□□□□□ -1.87
NR1H3Q13133 STAG3L5P-204ENST00000443759 179 ntBASIC3.38□□□□□ -1.87
NR1H3Q13133 RNU7-80P-201ENST00000459562 61 ntBASIC3.38□□□□□ -1.87
NR1H3Q13133 S100A11P2-201ENST00000467589 312 ntBASIC3.38□□□□□ -1.87
NR1H3Q13133 SCARNA20.6-201ENST00000517251 106 ntBASIC3.38□□□□□ -1.87
NR1H3Q13133 IGKV3-31-201ENST00000523109 329 ntBASIC3.38□□□□□ -1.87
NR1H3Q13133 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC3.38□□□□□ -1.87
NR1H3Q13133 MIR4778-201ENST00000577635 80 ntBASIC3.38□□□□□ -1.87
NR1H3Q13133 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
NR1H3Q13133 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.37□□□□□ -1.87
NR1H3Q13133 Y_RNA.298-201ENST00000364960 107 ntBASIC3.37□□□□□ -1.87
NR1H3Q13133 Y_RNA.351-201ENST00000365436 96 ntBASIC3.37□□□□□ -1.87
NR1H3Q13133 Y_RNA.362-201ENST00000365518 110 ntBASIC3.37□□□□□ -1.87
NR1H3Q13133 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
NR1H3Q13133 Y_RNA.454-201ENST00000384224 113 ntBASIC3.37□□□□□ -1.87
NR1H3Q13133 RNU6-1113P-201ENST00000384348 107 ntBASIC3.37□□□□□ -1.87
NR1H3Q13133 SNORD38C-201ENST00000384381 69 ntBASIC3.37□□□□□ -1.87
NR1H3Q13133 RNU6-163P-201ENST00000384396 106 ntBASIC3.37□□□□□ -1.87
NR1H3Q13133 RNU6-938P-201ENST00000411285 103 ntBASIC3.37□□□□□ -1.87
NR1H3Q13133 RNA5SP341-201ENST00000516261 117 ntBASIC3.37□□□□□ -1.87
NR1H3Q13133 RNA5SP281-201ENST00000516504 135 ntBASIC3.37□□□□□ -1.87
NR1H3Q13133 SUMO2P16-201ENST00000519475 264 ntBASIC3.37□□□□□ -1.87
NR1H3Q13133 SNORA28-201ENST00000606769 126 ntBASIC3.37□□□□□ -1.87
NR1H3Q13133 AL365361.1-201ENST00000566942 3481 ntBASIC3.37□□□□□ -1.87
NR1H3Q13133 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
NR1H3Q13133 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
NR1H3Q13133 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.37□□□□□ -1.87
NR1H3Q13133 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC3.36□□□□□ -1.87
NR1H3Q13133 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.36□□□□□ -1.87
NR1H3Q13133 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
NR1H3Q13133 Y_RNA.323-201ENST00000365157 109 ntBASIC3.36□□□□□ -1.87
NR1H3Q13133 RNU6-440P-201ENST00000390882 105 ntBASIC3.36□□□□□ -1.87
NR1H3Q13133 RN7SKP220-201ENST00000410611 288 ntBASIC3.36□□□□□ -1.87
NR1H3Q13133 RNU7-164P-201ENST00000459221 62 ntBASIC3.36□□□□□ -1.87
NR1H3Q13133 RN7SL863P-201ENST00000462370 296 ntBASIC3.36□□□□□ -1.87
NR1H3Q13133 AC092185.1-201ENST00000491371 97 ntBASIC3.36□□□□□ -1.87
NR1H3Q13133 AC005786.1-201ENST00000588553 154 ntBASIC3.36□□□□□ -1.87
NR1H3Q13133 RNU6-94P-201ENST00000607728 107 ntBASIC3.36□□□□□ -1.87
NR1H3Q13133 uc_338.1-201ENST00000612113 180 ntBASIC3.36□□□□□ -1.87
NR1H3Q13133 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
NR1H3Q13133 AL596211.1-201ENST00000569873 2277 ntBASIC3.35□□□□□ -1.87
NR1H3Q13133 MIR29C-201ENST00000385231 88 ntBASIC3.35□□□□□ -1.87
NR1H3Q13133 SNORA48.8-201ENST00000391324 134 ntBASIC3.35□□□□□ -1.87
NR1H3Q13133 AC104389.3-201ENST00000445629 235 ntBASIC3.35□□□□□ -1.87
NR1H3Q13133 AC114811.1-201ENST00000507207 168 ntBASIC3.35□□□□□ -1.87
NR1H3Q13133 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC3.35□□□□□ -1.87
NR1H3Q13133 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC3.35□□□□□ -1.87
NR1H3Q13133 AC069114.2-201ENST00000604699 304 ntBASIC3.35□□□□□ -1.87
NR1H3Q13133 MIR8054-201ENST00000620877 86 ntBASIC3.35□□□□□ -1.87
NR1H3Q13133 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
NR1H3Q13133 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.34□□□□□ -1.87
NR1H3Q13133 AL627390.1-201ENST00000396055 340 ntBASIC3.34□□□□□ -1.87
NR1H3Q13133 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.34□□□□□ -1.87
NR1H3Q13133 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.34□□□□□ -1.87
NR1H3Q13133 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.34□□□□□ -1.87
NR1H3Q13133 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.34□□□□□ -1.87
NR1H3Q13133 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
NR1H3Q13133 RNU1-58P-201ENST00000362413 163 ntBASIC3.33□□□□□ -1.88
NR1H3Q13133 RNU6-1019P-201ENST00000364424 107 ntBASIC3.33□□□□□ -1.88
NR1H3Q13133 Y_RNA.348-201ENST00000365403 103 ntBASIC3.33□□□□□ -1.88
NR1H3Q13133 COTL1P1-201ENST00000422309 375 ntBASIC3.33□□□□□ -1.88
NR1H3Q13133 AC092427.1-202ENST00000430569 476 ntBASIC3.33□□□□□ -1.88
NR1H3Q13133 MIR4305-201ENST00000583252 102 ntBASIC3.33□□□□□ -1.88
NR1H3Q13133 uc_338.25-201ENST00000613756 156 ntBASIC3.33□□□□□ -1.88
NR1H3Q13133 AP001318.4-201ENST00000616637 121 ntBASIC3.33□□□□□ -1.88
NR1H3Q13133 AC091932.4-201ENST00000623386 200 ntBASIC3.33□□□□□ -1.88
NR1H3Q13133 AC022513.1-201ENST00000624512 117 ntBASIC3.33□□□□□ -1.88
NR1H3Q13133 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.33□□□□□ -1.88
NR1H3Q13133 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
NR1H3Q13133 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
NR1H3Q13133 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
NR1H3Q13133 RNU1-91P-201ENST00000364746 163 ntBASIC3.32□□□□□ -1.88
NR1H3Q13133 RNU6-905P-201ENST00000384434 107 ntBASIC3.32□□□□□ -1.88
NR1H3Q13133 SNORA46-201ENST00000384762 135 ntBASIC3.32□□□□□ -1.88
NR1H3Q13133 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.32□□□□□ -1.88
NR1H3Q13133 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC3.32□□□□□ -1.88
NR1H3Q13133 UQCRHP3-201ENST00000451503 251 ntBASIC3.32□□□□□ -1.88
NR1H3Q13133 SNORA59A-201ENST00000459326 152 ntBASIC3.32□□□□□ -1.88
NR1H3Q13133 RNU6-830P-201ENST00000516353 107 ntBASIC3.32□□□□□ -1.88
NR1H3Q13133 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
NR1H3Q13133 AC084364.2-201ENST00000546924 395 ntBASIC3.32□□□□□ -1.88
NR1H3Q13133 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.32□□□□□ -1.88
NR1H3Q13133 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.31□□□□□ -1.88
NR1H3Q13133 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
NR1H3Q13133 AC009487.2-201ENST00000420969 6821 ntBASIC3.31□□□□□ -1.88
NR1H3Q13133 MIR342-201ENST00000362212 99 ntBASIC3.31□□□□□ -1.88
NR1H3Q13133 SNX2P2-201ENST00000424553 323 ntBASIC3.31□□□□□ -1.88
NR1H3Q13133 AC069257.2-201ENST00000441819 155 ntBASIC3.31□□□□□ -1.88
NR1H3Q13133 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC3.31□□□□□ -1.88
NR1H3Q13133 RNU7-123P-201ENST00000515911 60 ntBASIC3.31□□□□□ -1.88
NR1H3Q13133 RNU6-1116P-201ENST00000517269 99 ntBASIC3.31□□□□□ -1.88
NR1H3Q13133 MIR3126-201ENST00000577443 74 ntBASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 113.1 ms