Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 RNA5SP153-201ENST00000516498 76 ntBASIC2.65□□□□□ -1.99
NKX3-2P78367 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.65□□□□□ -1.99
NKX3-2P78367 AC004486.1-201ENST00000546846 233 ntBASIC2.65□□□□□ -1.99
NKX3-2P78367 AC015712.3-201ENST00000559380 164 ntBASIC2.65□□□□□ -1.99
NKX3-2P78367 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC2.65□□□□□ -1.99
NKX3-2P78367 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
NKX3-2P78367 SNORA33-201ENST00000363664 130 ntBASIC2.64□□□□□ -1.99
NKX3-2P78367 SNORA25B-201ENST00000365507 128 ntBASIC2.64□□□□□ -1.99
NKX3-2P78367 RNU6-44P-201ENST00000384045 107 ntBASIC2.64□□□□□ -1.99
NKX3-2P78367 Y_RNA.486-201ENST00000384398 107 ntBASIC2.64□□□□□ -1.99
NKX3-2P78367 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
NKX3-2P78367 RNA5SP210-201ENST00000391034 120 ntBASIC2.64□□□□□ -1.99
NKX3-2P78367 MIR1289-2-201ENST00000408360 111 ntBASIC2.64□□□□□ -1.99
NKX3-2P78367 HMGN2P3-201ENST00000433603 273 ntBASIC2.64□□□□□ -1.99
NKX3-2P78367 HMGN2P5-201ENST00000436882 273 ntBASIC2.64□□□□□ -1.99
NKX3-2P78367 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
NKX3-2P78367 AC023449.1-201ENST00000454464 154 ntBASIC2.64□□□□□ -1.99
NKX3-2P78367 AC233266.1-201ENST00000454518 96 ntBASIC2.64□□□□□ -1.99
NKX3-2P78367 NDUFA4P2-201ENST00000489989 244 ntBASIC2.64□□□□□ -1.99
NKX3-2P78367 RNU7-99P-201ENST00000516271 62 ntBASIC2.64□□□□□ -1.99
NKX3-2P78367 RNU6-1291P-201ENST00000516591 104 ntBASIC2.64□□□□□ -1.99
NKX3-2P78367 AC091178.2-201ENST00000584401 117 ntBASIC2.64□□□□□ -1.99
NKX3-2P78367 AC097639.2-201ENST00000603159 172 ntBASIC2.64□□□□□ -1.99
NKX3-2P78367 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.64□□□□□ -1.99
NKX3-2P78367 AC242852.1-201ENST00000612151 96 ntBASIC2.64□□□□□ -1.99
NKX3-2P78367 AC244015.1-201ENST00000622301 99 ntBASIC2.64□□□□□ -1.99
NKX3-2P78367 MIR338-201ENST00000636369 67 ntBASIC2.64□□□□□ -1.99
NKX3-2P78367 U6.108-201ENST00000637764 58 ntBASIC2.64□□□□□ -1.99
NKX3-2P78367 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
NKX3-2P78367 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
NKX3-2P78367 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.63□□□□□ -1.99
NKX3-2P78367 RNU6-1325P-201ENST00000364905 105 ntBASIC2.63□□□□□ -1.99
NKX3-2P78367 MIR520G-201ENST00000385064 90 ntBASIC2.63□□□□□ -1.99
NKX3-2P78367 MIR764-201ENST00000390811 85 ntBASIC2.63□□□□□ -1.99
NKX3-2P78367 AC018634.1-201ENST00000437554 401 ntBASIC2.63□□□□□ -1.99
NKX3-2P78367 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.63□□□□□ -1.99
NKX3-2P78367 RNU6-1146P-201ENST00000516282 102 ntBASIC2.63□□□□□ -1.99
NKX3-2P78367 MIR3670-2-201ENST00000582974 65 ntBASIC2.63□□□□□ -1.99
NKX3-2P78367 MIR3670-1-201ENST00000584160 65 ntBASIC2.63□□□□□ -1.99
NKX3-2P78367 MIR3670-3-201ENST00000584855 65 ntBASIC2.63□□□□□ -1.99
NKX3-2P78367 AC007229.1-201ENST00000590455 412 ntBASIC2.63□□□□□ -1.99
NKX3-2P78367 AL049779.4-201ENST00000604500 156 ntBASIC2.63□□□□□ -1.99
NKX3-2P78367 MIR3670-4-201ENST00000612260 65 ntBASIC2.63□□□□□ -1.99
NKX3-2P78367 JPX_2.1-201ENST00000614161 69 ntBASIC2.63□□□□□ -1.99
NKX3-2P78367 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
NKX3-2P78367 SNORA25.6-201ENST00000364121 118 ntBASIC2.62□□□□□ -1.99
NKX3-2P78367 EDDM3CP-201ENST00000415977 425 ntBASIC2.62□□□□□ -1.99
NKX3-2P78367 AL035461.1-201ENST00000421490 332 ntBASIC2.62□□□□□ -1.99
NKX3-2P78367 OR9P1P-201ENST00000496431 281 ntBASIC2.62□□□□□ -1.99
NKX3-2P78367 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.62□□□□□ -1.99
NKX3-2P78367 AL391516.1-201ENST00000554380 2449 ntBASIC2.62□□□□□ -1.99
NKX3-2P78367 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
NKX3-2P78367 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.62□□□□□ -1.99
NKX3-2P78367 RNU6-508P-201ENST00000363231 103 ntBASIC2.61□□□□□ -1.99
NKX3-2P78367 RNU6-1138P-201ENST00000365359 106 ntBASIC2.61□□□□□ -1.99
NKX3-2P78367 SNORA12.1-201ENST00000390873 148 ntBASIC2.61□□□□□ -1.99
NKX3-2P78367 MIR1262-201ENST00000408276 93 ntBASIC2.61□□□□□ -1.99
NKX3-2P78367 AL591806.2-201ENST00000433122 173 ntBASIC2.61□□□□□ -1.99
NKX3-2P78367 RPS15AP28-201ENST00000435088 386 ntBASIC2.61□□□□□ -1.99
NKX3-2P78367 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.61□□□□□ -1.99
NKX3-2P78367 RNU1-104P-201ENST00000517280 175 ntBASIC2.61□□□□□ -1.99
NKX3-2P78367 RNU2-60P-201ENST00000517290 128 ntBASIC2.61□□□□□ -1.99
NKX3-2P78367 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.61□□□□□ -1.99
NKX3-2P78367 ZNF355P-201ENST00000427301 3216 ntBASIC2.61□□□□□ -1.99
NKX3-2P78367 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
NKX3-2P78367 Y_RNA.253-201ENST00000364562 112 ntBASIC2.6□□□□□ -1.99
NKX3-2P78367 Y_RNA.267-201ENST00000364679 109 ntBASIC2.6□□□□□ -1.99
NKX3-2P78367 Y_RNA.563-201ENST00000384707 108 ntBASIC2.6□□□□□ -1.99
NKX3-2P78367 SRIP3-201ENST00000413200 219 ntBASIC2.6□□□□□ -1.99
NKX3-2P78367 MLLT10P1-201ENST00000418346 262 ntBASIC2.6□□□□□ -1.99
NKX3-2P78367 AL158823.1-201ENST00000418441 478 ntBASIC2.6□□□□□ -1.99
NKX3-2P78367 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.6□□□□□ -1.99
NKX3-2P78367 AL603825.1-201ENST00000438481 80 ntBASIC2.6□□□□□ -1.99
NKX3-2P78367 AL353689.1-201ENST00000438895 199 ntBASIC2.6□□□□□ -1.99
NKX3-2P78367 HMGN1P7-201ENST00000491722 313 ntBASIC2.6□□□□□ -1.99
NKX3-2P78367 RNU6-919P-201ENST00000516731 104 ntBASIC2.6□□□□□ -1.99
NKX3-2P78367 AC090049.2-201ENST00000550377 109 ntBASIC2.6□□□□□ -1.99
NKX3-2P78367 AC131055.1-201ENST00000584626 316 ntBASIC2.6□□□□□ -1.99
NKX3-2P78367 AL359075.3-201ENST00000613288 217 ntBASIC2.6□□□□□ -1.99
NKX3-2P78367 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC2.6□□□□□ -1.99
NKX3-2P78367 MIR6079-201ENST00000635807 62 ntBASIC2.6□□□□□ -1.99
NKX3-2P78367 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
NKX3-2P78367 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC2.59□□□□□ -1.99
NKX3-2P78367 Y_RNA.66-201ENST00000362862 102 ntBASIC2.59□□□□□ -1.99
NKX3-2P78367 Y_RNA.120-201ENST00000363304 110 ntBASIC2.59□□□□□ -1.99
NKX3-2P78367 SNORA67.1-201ENST00000364749 141 ntBASIC2.59□□□□□ -1.99
NKX3-2P78367 RNU6-1072P-201ENST00000384703 107 ntBASIC2.59□□□□□ -1.99
NKX3-2P78367 RNU6-443P-201ENST00000384780 107 ntBASIC2.59□□□□□ -1.99
NKX3-2P78367 SNORD72-201ENST00000390994 80 ntBASIC2.59□□□□□ -1.99
NKX3-2P78367 RNU6-482P-201ENST00000391068 107 ntBASIC2.59□□□□□ -1.99
NKX3-2P78367 AL117342.1-201ENST00000404861 406 ntBASIC2.59□□□□□ -1.99
NKX3-2P78367 MRPS17P9-201ENST00000511924 393 ntBASIC2.59□□□□□ -1.99
NKX3-2P78367 AC007751.1-201ENST00000529260 376 ntBASIC2.59□□□□□ -1.99
NKX3-2P78367 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC2.59□□□□□ -2
NKX3-2P78367 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.58□□□□□ -2
NKX3-2P78367 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
NKX3-2P78367 Y_RNA.99-201ENST00000363138 105 ntBASIC2.58□□□□□ -2
NKX3-2P78367 Y_RNA.280-201ENST00000364765 112 ntBASIC2.58□□□□□ -2
NKX3-2P78367 RNU6-429P-201ENST00000384582 108 ntBASIC2.58□□□□□ -2
NKX3-2P78367 MIR524-201ENST00000385242 87 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 142.5 ms