Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RNU6-647P-201ENST00000364243 107 ntBASIC2.67□□□□□ -1.98
RNF4P78317 SNORD58C-201ENST00000365223 64 ntBASIC2.67□□□□□ -1.98
RNF4P78317 SNORD77.3-201ENST00000391113 65 ntBASIC2.67□□□□□ -1.98
RNF4P78317 MIR548O-201ENST00000408583 114 ntBASIC2.67□□□□□ -1.98
RNF4P78317 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.67□□□□□ -1.98
RNF4P78317 AC107083.1-201ENST00000439643 279 ntBASIC2.67□□□□□ -1.98
RNF4P78317 RN7SL75P-201ENST00000461926 281 ntBASIC2.67□□□□□ -1.98
RNF4P78317 SCARNA13-201ENST00000516672 275 ntBASIC2.67□□□□□ -1.98
RNF4P78317 SNORA31.15-201ENST00000516771 132 ntBASIC2.67□□□□□ -1.98
RNF4P78317 RNU6-1149P-201ENST00000516810 97 ntBASIC2.67□□□□□ -1.98
RNF4P78317 EIF4BP1-201ENST00000554881 351 ntBASIC2.67□□□□□ -1.98
RNF4P78317 MIR4446-201ENST00000578505 67 ntBASIC2.67□□□□□ -1.98
RNF4P78317 AC006386.2-201ENST00000624491 75 ntBASIC2.67□□□□□ -1.98
RNF4P78317 AC012005.1-201ENST00000624575 75 ntBASIC2.67□□□□□ -1.98
RNF4P78317 MIR376A2-201ENST00000636782 80 ntBASIC2.67□□□□□ -1.98
RNF4P78317 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.67□□□□□ -1.98
RNF4P78317 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
RNF4P78317 RNU6-1292P-201ENST00000383856 107 ntBASIC2.66□□□□□ -1.98
RNF4P78317 RNU6-442P-201ENST00000383968 104 ntBASIC2.66□□□□□ -1.98
RNF4P78317 MTATP6P21-201ENST00000440681 189 ntBASIC2.66□□□□□ -1.98
RNF4P78317 STAG3L5P-204ENST00000443759 179 ntBASIC2.66□□□□□ -1.98
RNF4P78317 RNA5SP236-201ENST00000516169 116 ntBASIC2.66□□□□□ -1.98
RNF4P78317 RNU7-25P-201ENST00000516544 62 ntBASIC2.66□□□□□ -1.98
RNF4P78317 MIR5094-201ENST00000578766 85 ntBASIC2.66□□□□□ -1.98
RNF4P78317 MIR4658-201ENST00000584344 65 ntBASIC2.66□□□□□ -1.98
RNF4P78317 FO624990.1-201ENST00000636373 85 ntBASIC2.66□□□□□ -1.98
RNF4P78317 U6.95-201ENST00000636931 70 ntBASIC2.66□□□□□ -1.98
RNF4P78317 RNA5SP393-201ENST00000363423 117 ntBASIC2.65□□□□□ -1.99
RNF4P78317 RNU6-153P-201ENST00000364422 104 ntBASIC2.65□□□□□ -1.99
RNF4P78317 Y_RNA.242-201ENST00000364473 110 ntBASIC2.65□□□□□ -1.99
RNF4P78317 U8.5-201ENST00000364528 136 ntBASIC2.65□□□□□ -1.99
RNF4P78317 snoU2-30.1-201ENST00000365012 70 ntBASIC2.65□□□□□ -1.99
RNF4P78317 MIR29C-201ENST00000385231 88 ntBASIC2.65□□□□□ -1.99
RNF4P78317 MIR23A-201ENST00000385245 73 ntBASIC2.65□□□□□ -1.99
RNF4P78317 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.65□□□□□ -1.99
RNF4P78317 AL135938.1-201ENST00000443141 297 ntBASIC2.65□□□□□ -1.99
RNF4P78317 MIR4762-201ENST00000585261 75 ntBASIC2.65□□□□□ -1.99
RNF4P78317 AC005786.1-201ENST00000588553 154 ntBASIC2.65□□□□□ -1.99
RNF4P78317 AC069114.2-201ENST00000604699 304 ntBASIC2.65□□□□□ -1.99
RNF4P78317 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
RNF4P78317 SNORA80A-201ENST00000363922 136 ntBASIC2.64□□□□□ -1.99
RNF4P78317 SNORA38-201ENST00000363946 132 ntBASIC2.64□□□□□ -1.99
RNF4P78317 RNY4P18-201ENST00000391107 89 ntBASIC2.64□□□□□ -1.99
RNF4P78317 Y_RNA.617-201ENST00000410920 90 ntBASIC2.64□□□□□ -1.99
RNF4P78317 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.64□□□□□ -1.99
RNF4P78317 SUMO1P4-201ENST00000429430 302 ntBASIC2.64□□□□□ -1.99
RNF4P78317 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.64□□□□□ -1.99
RNF4P78317 SNORD45.4-201ENST00000516629 73 ntBASIC2.64□□□□□ -1.99
RNF4P78317 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.64□□□□□ -1.99
RNF4P78317 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.64□□□□□ -1.99
RNF4P78317 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.64□□□□□ -1.99
RNF4P78317 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.64□□□□□ -1.99
RNF4P78317 RNU6-268P-201ENST00000364174 107 ntBASIC2.63□□□□□ -1.99
RNF4P78317 MIR512-1-201ENST00000384913 84 ntBASIC2.63□□□□□ -1.99
RNF4P78317 RNA5SP482-201ENST00000391269 118 ntBASIC2.63□□□□□ -1.99
RNF4P78317 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.63□□□□□ -1.99
RNF4P78317 AL021397.1-201ENST00000451806 248 ntBASIC2.63□□□□□ -1.99
RNF4P78317 RN7SKP19-201ENST00000516016 252 ntBASIC2.63□□□□□ -1.99
RNF4P78317 RNA5SP367-201ENST00000516557 118 ntBASIC2.63□□□□□ -1.99
RNF4P78317 RNU6-1116P-201ENST00000517269 99 ntBASIC2.63□□□□□ -1.99
RNF4P78317 IGKV1-22-201ENST00000524313 326 ntBASIC2.63□□□□□ -1.99
RNF4P78317 AC084364.2-201ENST00000546924 395 ntBASIC2.63□□□□□ -1.99
RNF4P78317 MIR8054-201ENST00000620877 86 ntBASIC2.63□□□□□ -1.99
RNF4P78317 AC010297.1-201ENST00000623948 149 ntBASIC2.63□□□□□ -1.99
RNF4P78317 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
RNF4P78317 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
RNF4P78317 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
RNF4P78317 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.62□□□□□ -1.99
RNF4P78317 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
RNF4P78317 RNU6-440P-201ENST00000390882 105 ntBASIC2.62□□□□□ -1.99
RNF4P78317 RNU11-3P-201ENST00000391111 133 ntBASIC2.62□□□□□ -1.99
RNF4P78317 HSPE1P9-201ENST00000440046 311 ntBASIC2.62□□□□□ -1.99
RNF4P78317 MIR5197-201ENST00000583721 112 ntBASIC2.62□□□□□ -1.99
RNF4P78317 AL670379.3-201ENST00000605040 251 ntBASIC2.62□□□□□ -1.99
RNF4P78317 AL033523.1-201ENST00000605153 153 ntBASIC2.62□□□□□ -1.99
RNF4P78317 MIR7106-201ENST00000612419 65 ntBASIC2.62□□□□□ -1.99
RNF4P78317 AL365361.1-201ENST00000566942 3481 ntBASIC2.62□□□□□ -1.99
RNF4P78317 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.61□□□□□ -1.99
RNF4P78317 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.61□□□□□ -1.99
RNF4P78317 RNU1-138P-201ENST00000384093 164 ntBASIC2.61□□□□□ -1.99
RNF4P78317 Y_RNA.547-201ENST00000384654 119 ntBASIC2.61□□□□□ -1.99
RNF4P78317 SNORA80E-201ENST00000384744 137 ntBASIC2.61□□□□□ -1.99
RNF4P78317 MIR548A3-201ENST00000385297 97 ntBASIC2.61□□□□□ -1.99
RNF4P78317 AC087499.2-201ENST00000432861 149 ntBASIC2.61□□□□□ -1.99
RNF4P78317 SNRPGP14-201ENST00000435400 219 ntBASIC2.61□□□□□ -1.99
RNF4P78317 SCARNA15-202ENST00000516881 127 ntBASIC2.61□□□□□ -1.99
RNF4P78317 Y_RNA.709-201ENST00000516952 92 ntBASIC2.61□□□□□ -1.99
RNF4P78317 MIR5194-201ENST00000582634 120 ntBASIC2.61□□□□□ -1.99
RNF4P78317 ELOCP29-201ENST00000588193 334 ntBASIC2.61□□□□□ -1.99
RNF4P78317 AL049779.4-201ENST00000604500 156 ntBASIC2.61□□□□□ -1.99
RNF4P78317 AC025166.1-201ENST00000612411 163 ntBASIC2.61□□□□□ -1.99
RNF4P78317 AC006441.5-201ENST00000612680 209 ntBASIC2.61□□□□□ -1.99
RNF4P78317 AC015726.2-201ENST00000620112 122 ntBASIC2.61□□□□□ -1.99
RNF4P78317 AL121890.5-201ENST00000620848 304 ntBASIC2.61□□□□□ -1.99
RNF4P78317 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.61□□□□□ -1.99
RNF4P78317 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
RNF4P78317 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
RNF4P78317 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.6□□□□□ -1.99
RNF4P78317 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
RNF4P78317 RNU6-1019P-201ENST00000364424 107 ntBASIC2.6□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms