Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 snoU13.28-201ENST00000459235 104 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.39□□□□□ -2.19
COL4A4P53420 Y_RNA.797-201ENST00000515977 94 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 RNU6-155P-201ENST00000516347 100 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC1.39□□□□□ -2.19
COL4A4P53420 AC127455.1-201ENST00000565496 145 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 MIR3646-201ENST00000578301 84 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC1.39□□□□□ -2.19
COL4A4P53420 MIR3674-201ENST00000636576 68 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 MIR6844-201ENST00000637122 62 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC1.39□□□□□ -2.19
COL4A4P53420 RNU6-529P-201ENST00000363383 104 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 Y_RNA.127-201ENST00000363386 109 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 RNU6-103P-201ENST00000363686 107 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 RNU4-10P-201ENST00000364383 140 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 RNU1-133P-201ENST00000364867 167 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 Y_RNA.310-201ENST00000365063 113 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 RNU6-215P-201ENST00000365169 102 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 RNU6-487P-201ENST00000365430 104 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 MIR539-201ENST00000365690 78 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 RNU6-144P-201ENST00000383951 107 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 RNU6-514P-201ENST00000384208 107 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 SNORA67.2-201ENST00000384300 149 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 SNORA1.3-201ENST00000384676 136 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 Y_RNA.563-201ENST00000384707 108 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 SNORA26.5-201ENST00000391215 123 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 RNU6-381P-201ENST00000391259 108 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 CYCSP48-201ENST00000417124 323 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 AL590383.1-201ENST00000428602 75 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 UBBP3-201ENST00000445497 241 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 RPL30P5-201ENST00000494923 336 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 SNORD116-25-201ENST00000516517 92 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 RNU6-344P-201ENST00000516635 111 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 AC115990.1-201ENST00000526957 301 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 AP002001.1-203ENST00000534002 267 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.39□□□□□ -2.19
COL4A4P53420 MIR548X2-201ENST00000579776 100 ntBASIC1.39□□□□□ -2.19
COL4A4P53420 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC1.38□□□□□ -2.19
COL4A4P53420 SNORD114-19-201ENST00000363072 75 ntBASIC1.38□□□□□ -2.19
COL4A4P53420 Y_RNA.182-201ENST00000363880 111 ntBASIC1.38□□□□□ -2.19
COL4A4P53420 Y_RNA.337-201ENST00000365312 102 ntBASIC1.38□□□□□ -2.19
COL4A4P53420 MIR1278-201ENST00000408753 81 ntBASIC1.38□□□□□ -2.19
COL4A4P53420 AL035461.1-201ENST00000421490 332 ntBASIC1.38□□□□□ -2.19
COL4A4P53420 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.38□□□□□ -2.19
COL4A4P53420 PDCD5P2-201ENST00000507570 312 ntBASIC1.38□□□□□ -2.19
COL4A4P53420 AC009127.3-201ENST00000570531 403 ntBASIC1.38□□□□□ -2.19
COL4A4P53420 MIR5000-201ENST00000577717 103 ntBASIC1.38□□□□□ -2.19
COL4A4P53420 AC069294.1-201ENST00000608397 350 ntBASIC1.38□□□□□ -2.19
COL4A4P53420 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.38□□□□□ -2.19
COL4A4P53420 SNORD98-201ENST00000636377 67 ntBASIC1.38□□□□□ -2.19
COL4A4P53420 MIR3529-201ENST00000637713 78 ntBASIC1.38□□□□□ -2.19
COL4A4P53420 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
COL4A4P53420 AP000648.3-201ENST00000623539 4507 ntBASIC1.37□□□□□ -2.19
COL4A4P53420 SNORD114-7-201ENST00000362520 77 ntBASIC1.37□□□□□ -2.19
COL4A4P53420 snoU2_19.4-201ENST00000364329 80 ntBASIC1.37□□□□□ -2.19
COL4A4P53420 Y_RNA.293-201ENST00000364908 93 ntBASIC1.37□□□□□ -2.19
COL4A4P53420 RNU6-275P-201ENST00000364910 107 ntBASIC1.37□□□□□ -2.19
COL4A4P53420 AC074290.1-201ENST00000448883 135 ntBASIC1.37□□□□□ -2.19
COL4A4P53420 HSPE1P13-201ENST00000451143 297 ntBASIC1.37□□□□□ -2.19
COL4A4P53420 SNRPGP8-201ENST00000454064 226 ntBASIC1.37□□□□□ -2.19
COL4A4P53420 snoU13.6-201ENST00000458785 104 ntBASIC1.37□□□□□ -2.19
COL4A4P53420 RPS27AP10-201ENST00000496103 208 ntBASIC1.37□□□□□ -2.19
COL4A4P53420 Y_RNA.686-201ENST00000516548 134 ntBASIC1.37□□□□□ -2.19
COL4A4P53420 RNU6-971P-201ENST00000516920 106 ntBASIC1.37□□□□□ -2.19
COL4A4P53420 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.37□□□□□ -2.19
COL4A4P53420 POC1B-211ENST00000549504 581 ntTSL 5 BASIC1.37□□□□□ -2.19
COL4A4P53420 EIF4A1P12-201ENST00000551910 141 ntBASIC1.37□□□□□ -2.19
COL4A4P53420 SUB1P4-201ENST00000566062 339 ntBASIC1.37□□□□□ -2.19
COL4A4P53420 MIR5006-201ENST00000583027 110 ntBASIC1.37□□□□□ -2.19
COL4A4P53420 HMGN2P15-201ENST00000585707 270 ntBASIC1.37□□□□□ -2.19
COL4A4P53420 AC008739.2-201ENST00000597006 317 ntBASIC1.37□□□□□ -2.19
COL4A4P53420 AC103810.8-201ENST00000607347 118 ntBASIC1.37□□□□□ -2.19
COL4A4P53420 MIR7974-201ENST00000615835 79 ntBASIC1.37□□□□□ -2.19
COL4A4P53420 AC022513.1-201ENST00000624512 117 ntBASIC1.37□□□□□ -2.19
COL4A4P53420 U6.115-201ENST00000636045 103 ntBASIC1.37□□□□□ -2.19
COL4A4P53420 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.37□□□□□ -2.19
COL4A4P53420 ZNF702P-202ENST00000434269 1966 ntBASIC1.37□□□□□ -2.19
COL4A4P53420 Y_RNA.261-201ENST00000364631 102 ntBASIC1.36□□□□□ -2.19
COL4A4P53420 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.36□□□□□ -2.19
COL4A4P53420 SNORA20-201ENST00000384662 132 ntBASIC1.36□□□□□ -2.19
COL4A4P53420 RNU6-19P-201ENST00000384718 107 ntBASIC1.36□□□□□ -2.19
COL4A4P53420 MIR216A-201ENST00000385063 110 ntBASIC1.36□□□□□ -2.19
COL4A4P53420 MIR569-201ENST00000385228 96 ntBASIC1.36□□□□□ -2.19
COL4A4P53420 RNU6-1228P-201ENST00000391014 107 ntBASIC1.36□□□□□ -2.19
COL4A4P53420 SNORA40.6-201ENST00000391153 128 ntBASIC1.36□□□□□ -2.19
COL4A4P53420 AIMP1P2-201ENST00000425294 312 ntBASIC1.36□□□□□ -2.19
COL4A4P53420 RNA5SP310-201ENST00000459084 116 ntBASIC1.36□□□□□ -2.19
COL4A4P53420 snoU13.14-201ENST00000459372 104 ntBASIC1.36□□□□□ -2.19
COL4A4P53420 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC1.36□□□□□ -2.19
COL4A4P53420 RNU6-1333P-201ENST00000516162 93 ntBASIC1.36□□□□□ -2.19
COL4A4P53420 ACA59.2-201ENST00000517061 156 ntBASIC1.36□□□□□ -2.19
COL4A4P53420 AC109810.1-201ENST00000534066 224 ntBASIC1.36□□□□□ -2.19
COL4A4P53420 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.36□□□□□ -2.19
COL4A4P53420 MIR3121-201ENST00000579680 77 ntBASIC1.36□□□□□ -2.19
COL4A4P53420 TUG1_4.1-201ENST00000619464 181 ntBASIC1.36□□□□□ -2.19
COL4A4P53420 AC068205.3-201ENST00000636385 468 ntBASIC1.36□□□□□ -2.19
COL4A4P53420 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
COL4A4P53420 AC138915.1-201ENST00000565427 1685 ntBASIC1.36□□□□□ -2.19
COL4A4P53420 RNU6-199P-201ENST00000362954 107 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 Y_RNA.115-201ENST00000363272 98 ntBASIC1.35□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 117.2 ms