Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 Y_RNA.272-201ENST00000364696 102 ntBASIC1.79□□□□□ -2.12
HOXD3P31249 Y_RNA.441-201ENST00000384123 112 ntBASIC1.79□□□□□ -2.12
HOXD3P31249 MIR764-201ENST00000390811 85 ntBASIC1.79□□□□□ -2.12
HOXD3P31249 SNORA12.1-201ENST00000390873 148 ntBASIC1.79□□□□□ -2.12
HOXD3P31249 RNU6-1228P-201ENST00000391014 107 ntBASIC1.79□□□□□ -2.12
HOXD3P31249 RN7SKP101-201ENST00000411376 320 ntBASIC1.79□□□□□ -2.12
HOXD3P31249 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.79□□□□□ -2.12
HOXD3P31249 SNORD11-201ENST00000459124 84 ntBASIC1.79□□□□□ -2.12
HOXD3P31249 AL049830.1-201ENST00000468034 425 ntBASIC1.79□□□□□ -2.12
HOXD3P31249 NDUFA4P2-201ENST00000489989 244 ntBASIC1.79□□□□□ -2.12
HOXD3P31249 AC108210.2-201ENST00000503681 201 ntBASIC1.79□□□□□ -2.12
HOXD3P31249 RNU6-346P-201ENST00000516288 111 ntBASIC1.79□□□□□ -2.12
HOXD3P31249 SNORA31.11-201ENST00000516528 139 ntBASIC1.79□□□□□ -2.12
HOXD3P31249 MIR1273D-201ENST00000577266 86 ntBASIC1.79□□□□□ -2.12
HOXD3P31249 AL391903.3-201ENST00000612158 163 ntBASIC1.79□□□□□ -2.12
HOXD3P31249 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.79□□□□□ -2.12
HOXD3P31249 AL591926.4-201ENST00000616895 298 ntBASIC1.79□□□□□ -2.12
HOXD3P31249 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.79□□□□□ -2.12
HOXD3P31249 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.79□□□□□ -2.12
HOXD3P31249 RNU6-1019P-201ENST00000364424 107 ntBASIC1.78□□□□□ -2.12
HOXD3P31249 SNORA4.2-201ENST00000365313 147 ntBASIC1.78□□□□□ -2.12
HOXD3P31249 RNU6-187P-201ENST00000384139 106 ntBASIC1.78□□□□□ -2.12
HOXD3P31249 Y_RNA.506-201ENST00000384494 102 ntBASIC1.78□□□□□ -2.12
HOXD3P31249 MIR515-2-201ENST00000384883 83 ntBASIC1.78□□□□□ -2.12
HOXD3P31249 MIR515-1-201ENST00000384884 83 ntBASIC1.78□□□□□ -2.12
HOXD3P31249 MIR17-201ENST00000385012 84 ntBASIC1.78□□□□□ -2.12
HOXD3P31249 RNA5SP496-201ENST00000391240 109 ntBASIC1.78□□□□□ -2.12
HOXD3P31249 AL512604.1-201ENST00000404812 257 ntBASIC1.78□□□□□ -2.12
HOXD3P31249 AL603908.1-201ENST00000406098 201 ntBASIC1.78□□□□□ -2.12
HOXD3P31249 SNORA11.4-201ENST00000408823 129 ntBASIC1.78□□□□□ -2.12
HOXD3P31249 RNA5SP450-201ENST00000411206 102 ntBASIC1.78□□□□□ -2.12
HOXD3P31249 AC245047.3-201ENST00000429428 127 ntBASIC1.78□□□□□ -2.12
HOXD3P31249 SNORA31.10-201ENST00000516482 106 ntBASIC1.78□□□□□ -2.12
HOXD3P31249 RNU6-1212P-201ENST00000517023 104 ntBASIC1.78□□□□□ -2.12
HOXD3P31249 AC069114.2-201ENST00000604699 304 ntBASIC1.78□□□□□ -2.12
HOXD3P31249 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.78□□□□□ -2.13
HOXD3P31249 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.78□□□□□ -2.13
HOXD3P31249 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.78□□□□□ -2.13
HOXD3P31249 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
HOXD3P31249 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
HOXD3P31249 MIR21-201ENST00000362134 72 ntBASIC1.77□□□□□ -2.13
HOXD3P31249 SNORD45.3-201ENST00000363836 72 ntBASIC1.77□□□□□ -2.13
HOXD3P31249 RNA5SP99-201ENST00000364020 114 ntBASIC1.77□□□□□ -2.13
HOXD3P31249 RNU4-84P-201ENST00000364200 139 ntBASIC1.77□□□□□ -2.13
HOXD3P31249 RNU1-51P-201ENST00000365345 176 ntBASIC1.77□□□□□ -2.13
HOXD3P31249 MIR15B-201ENST00000385045 98 ntBASIC1.77□□□□□ -2.13
HOXD3P31249 RNU6-440P-201ENST00000390882 105 ntBASIC1.77□□□□□ -2.13
HOXD3P31249 RNA5SP465-201ENST00000391195 109 ntBASIC1.77□□□□□ -2.13
HOXD3P31249 MIR548M-201ENST00000408260 86 ntBASIC1.77□□□□□ -2.13
HOXD3P31249 CYCSP49-201ENST00000420810 319 ntBASIC1.77□□□□□ -2.13
HOXD3P31249 SNRPGP10-201ENST00000432323 225 ntBASIC1.77□□□□□ -2.13
HOXD3P31249 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.77□□□□□ -2.13
HOXD3P31249 snoU13.23-201ENST00000458863 104 ntBASIC1.77□□□□□ -2.13
HOXD3P31249 HMGN1P7-201ENST00000491722 313 ntBASIC1.77□□□□□ -2.13
HOXD3P31249 AC015712.3-201ENST00000559380 164 ntBASIC1.77□□□□□ -2.13
HOXD3P31249 SUB1P4-201ENST00000566062 339 ntBASIC1.77□□□□□ -2.13
HOXD3P31249 MIR4431-201ENST00000579990 94 ntBASIC1.77□□□□□ -2.13
HOXD3P31249 MIR5007-201ENST00000583098 95 ntBASIC1.77□□□□□ -2.13
HOXD3P31249 MIR3133-201ENST00000583157 78 ntBASIC1.77□□□□□ -2.13
HOXD3P31249 uc_338.4-201ENST00000616635 176 ntBASIC1.77□□□□□ -2.13
HOXD3P31249 ZNF702P-202ENST00000434269 1966 ntBASIC1.77□□□□□ -2.13
HOXD3P31249 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.76□□□□□ -2.13
HOXD3P31249 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC1.76□□□□□ -2.13
HOXD3P31249 MIR6073-201ENST00000352083 89 ntBASIC1.76□□□□□ -2.13
HOXD3P31249 MIR126-201ENST00000362291 85 ntBASIC1.76□□□□□ -2.13
HOXD3P31249 SNORD68-201ENST00000363214 84 ntBASIC1.76□□□□□ -2.13
HOXD3P31249 RNU6-728P-201ENST00000365375 104 ntBASIC1.76□□□□□ -2.13
HOXD3P31249 Y_RNA.357-201ENST00000365487 109 ntBASIC1.76□□□□□ -2.13
HOXD3P31249 RNU6-125P-201ENST00000384505 107 ntBASIC1.76□□□□□ -2.13
HOXD3P31249 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
HOXD3P31249 SNORA48.1-201ENST00000390879 135 ntBASIC1.76□□□□□ -2.13
HOXD3P31249 AC006461.1-201ENST00000412637 326 ntBASIC1.76□□□□□ -2.13
HOXD3P31249 AL356379.1-201ENST00000414105 126 ntBASIC1.76□□□□□ -2.13
HOXD3P31249 HSPE1P9-201ENST00000440046 311 ntBASIC1.76□□□□□ -2.13
HOXD3P31249 RNU7-94P-201ENST00000459576 63 ntBASIC1.76□□□□□ -2.13
HOXD3P31249 DEFB122-202ENST00000569013 197 ntBASIC1.76□□□□□ -2.13
HOXD3P31249 MIR2681-201ENST00000581814 105 ntBASIC1.76□□□□□ -2.13
HOXD3P31249 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.76□□□□□ -2.13
HOXD3P31249 AL137847.3-201ENST00000611521 109 ntBASIC1.76□□□□□ -2.13
HOXD3P31249 JPX_2.1-201ENST00000614161 69 ntBASIC1.76□□□□□ -2.13
HOXD3P31249 MIR8054-201ENST00000620877 86 ntBASIC1.76□□□□□ -2.13
HOXD3P31249 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
HOXD3P31249 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.76□□□□□ -2.13
HOXD3P31249 SNORD114-1-201ENST00000362705 72 ntBASIC1.75□□□□□ -2.13
HOXD3P31249 SNORD116-18-201ENST00000383961 92 ntBASIC1.75□□□□□ -2.13
HOXD3P31249 RNU6-484P-201ENST00000384016 107 ntBASIC1.75□□□□□ -2.13
HOXD3P31249 MIR562-201ENST00000384894 95 ntBASIC1.75□□□□□ -2.13
HOXD3P31249 RNU7-149P-201ENST00000516739 59 ntBASIC1.75□□□□□ -2.13
HOXD3P31249 RNU2-56P-201ENST00000516826 190 ntBASIC1.75□□□□□ -2.13
HOXD3P31249 RNA5SP437-201ENST00000517249 129 ntBASIC1.75□□□□□ -2.13
HOXD3P31249 AP002004.2-201ENST00000531656 154 ntBASIC1.75□□□□□ -2.13
HOXD3P31249 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.75□□□□□ -2.13
HOXD3P31249 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC1.75□□□□□ -2.13
HOXD3P31249 Pinc.1-201ENST00000616452 154 ntBASIC1.75□□□□□ -2.13
HOXD3P31249 MIR6766-201ENST00000622641 72 ntBASIC1.75□□□□□ -2.13
HOXD3P31249 MIR3658-201ENST00000636291 56 ntBASIC1.75□□□□□ -2.13
HOXD3P31249 AC008555.8-201ENST00000623602 2168 ntBASIC1.75□□□□□ -2.13
HOXD3P31249 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
HOXD3P31249 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.74□□□□□ -2.13
HOXD3P31249 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms