Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
ABCA4P78363 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ABCA4P78363 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
ABCA4P78363 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC16.24■□□□□ 0.19
ABCA4P78363 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
ABCA4P78363 AL162741.1-201ENST00000565563 1558 ntBASIC16.24■□□□□ 0.19
ABCA4P78363 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ABCA4P78363 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC16.24■□□□□ 0.19
ABCA4P78363 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
ABCA4P78363 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC16.24■□□□□ 0.19
ABCA4P78363 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
ABCA4P78363 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ABCA4P78363 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
ABCA4P78363 MIR662-201ENST00000384847 95 ntBASIC16.24■□□□□ 0.19
ABCA4P78363 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC16.24■□□□□ 0.19
ABCA4P78363 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
ABCA4P78363 CHCHD2P8-201ENST00000429873 447 ntBASIC16.24■□□□□ 0.19
ABCA4P78363 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.24■□□□□ 0.19
ABCA4P78363 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
ABCA4P78363 CLDN5-201ENST00000403084 2357 ntBASIC16.23■□□□□ 0.19
ABCA4P78363 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ABCA4P78363 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
ABCA4P78363 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
ABCA4P78363 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ABCA4P78363 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
ABCA4P78363 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
ABCA4P78363 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ABCA4P78363 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
ABCA4P78363 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC16.23■□□□□ 0.19
ABCA4P78363 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ABCA4P78363 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ABCA4P78363 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
ABCA4P78363 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.23■□□□□ 0.19
ABCA4P78363 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
ABCA4P78363 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.23■□□□□ 0.19
ABCA4P78363 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ABCA4P78363 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ABCA4P78363 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
ABCA4P78363 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ABCA4P78363 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ABCA4P78363 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC16.23■□□□□ 0.19
ABCA4P78363 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
ABCA4P78363 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ABCA4P78363 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC16.23■□□□□ 0.19
ABCA4P78363 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
ABCA4P78363 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
ABCA4P78363 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
ABCA4P78363 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA4P78363 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA4P78363 AL671883.3-201ENST00000603274 991 ntBASIC16.22■□□□□ 0.19
ABCA4P78363 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.22■□□□□ 0.19
ABCA4P78363 WDR6-223ENST00000627177 207 ntTSL 2 BASIC16.22■□□□□ 0.19
ABCA4P78363 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA4P78363 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA4P78363 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA4P78363 GABARAPL3-202ENST00000624044 1851 ntBASIC16.22■□□□□ 0.19
ABCA4P78363 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA4P78363 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA4P78363 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA4P78363 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA4P78363 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC16.22■□□□□ 0.19
ABCA4P78363 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA4P78363 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA4P78363 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA4P78363 EMBP1-201ENST00000458200 901 ntBASIC16.22■□□□□ 0.19
ABCA4P78363 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC16.22■□□□□ 0.19
ABCA4P78363 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA4P78363 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA4P78363 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA4P78363 RNF126P1-202ENST00000569893 925 ntBASIC16.22■□□□□ 0.19
ABCA4P78363 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC16.22■□□□□ 0.19
ABCA4P78363 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA4P78363 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA4P78363 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC16.22■□□□□ 0.19
ABCA4P78363 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA4P78363 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA4P78363 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA4P78363 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA4P78363 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC16.22■□□□□ 0.19
ABCA4P78363 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA4P78363 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ABCA4P78363 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
ABCA4P78363 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
ABCA4P78363 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ABCA4P78363 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC16.21■□□□□ 0.19
ABCA4P78363 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC16.21■□□□□ 0.19
ABCA4P78363 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.21■□□□□ 0.19
ABCA4P78363 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC16.21■□□□□ 0.19
ABCA4P78363 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ABCA4P78363 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ABCA4P78363 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC16.21■□□□□ 0.19
ABCA4P78363 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
ABCA4P78363 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
ABCA4P78363 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
ABCA4P78363 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.21■□□□□ 0.19
ABCA4P78363 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC16.21■□□□□ 0.19
ABCA4P78363 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
ABCA4P78363 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ABCA4P78363 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ABCA4P78363 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms