Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
MSH6P52701 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
MSH6P52701 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
MSH6P52701 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
MSH6P52701 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC26.14■■□□□ 1.78
MSH6P52701 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
MSH6P52701 IGHGP-201ENST00000390555 1178 ntBASIC26.14■■□□□ 1.78
MSH6P52701 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
MSH6P52701 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC26.14■■□□□ 1.78
MSH6P52701 AL049840.3-201ENST00000602669 611 ntBASIC26.14■■□□□ 1.78
MSH6P52701 AC140113.2-201ENST00000604370 208 ntBASIC26.14■■□□□ 1.78
MSH6P52701 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
MSH6P52701 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
MSH6P52701 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC26.14■■□□□ 1.78
MSH6P52701 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC26.14■■□□□ 1.77
MSH6P52701 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
MSH6P52701 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
MSH6P52701 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC26.14■■□□□ 1.77
MSH6P52701 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.77
MSH6P52701 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
MSH6P52701 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
MSH6P52701 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC26.13■■□□□ 1.77
MSH6P52701 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
MSH6P52701 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC26.13■■□□□ 1.77
MSH6P52701 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC26.13■■□□□ 1.77
MSH6P52701 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC26.13■■□□□ 1.77
MSH6P52701 AC104390.1-201ENST00000555663 520 ntBASIC26.13■■□□□ 1.77
MSH6P52701 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC26.13■■□□□ 1.77
MSH6P52701 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC26.13■■□□□ 1.77
MSH6P52701 AC055717.3-201ENST00000622967 595 ntBASIC26.13■■□□□ 1.77
MSH6P52701 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC26.13■■□□□ 1.77
MSH6P52701 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC26.13■■□□□ 1.77
MSH6P52701 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC26.13■■□□□ 1.77
MSH6P52701 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC26.13■■□□□ 1.77
MSH6P52701 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
MSH6P52701 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC26.13■■□□□ 1.77
MSH6P52701 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
MSH6P52701 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
MSH6P52701 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
MSH6P52701 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC26.12■■□□□ 1.77
MSH6P52701 AP005212.1-201ENST00000581547 1997 ntBASIC26.12■■□□□ 1.77
MSH6P52701 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC26.12■■□□□ 1.77
MSH6P52701 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC26.12■■□□□ 1.77
MSH6P52701 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC26.12■■□□□ 1.77
MSH6P52701 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
MSH6P52701 PGAM5P1-201ENST00000518923 814 ntBASIC26.12■■□□□ 1.77
MSH6P52701 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC26.12■■□□□ 1.77
MSH6P52701 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC26.12■■□□□ 1.77
MSH6P52701 TEN1-204ENST00000588202 862 ntTSL 3 BASIC26.12■■□□□ 1.77
MSH6P52701 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC26.12■■□□□ 1.77
MSH6P52701 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
MSH6P52701 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
MSH6P52701 KRT8P7-201ENST00000533003 1432 ntBASIC26.12■■□□□ 1.77
MSH6P52701 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC26.12■■□□□ 1.77
MSH6P52701 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
MSH6P52701 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC26.12■■□□□ 1.77
MSH6P52701 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC26.11■■□□□ 1.77
MSH6P52701 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
MSH6P52701 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC26.11■■□□□ 1.77
MSH6P52701 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
MSH6P52701 MINOS1P3-201ENST00000457048 203 ntBASIC26.11■■□□□ 1.77
MSH6P52701 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
MSH6P52701 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC26.11■■□□□ 1.77
MSH6P52701 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC26.11■■□□□ 1.77
MSH6P52701 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC26.11■■□□□ 1.77
MSH6P52701 KRT8P3-201ENST00000519669 1449 ntBASIC26.11■■□□□ 1.77
MSH6P52701 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC26.11■■□□□ 1.77
MSH6P52701 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC26.11■■□□□ 1.77
MSH6P52701 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC26.1■■□□□ 1.77
MSH6P52701 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
MSH6P52701 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC26.1■■□□□ 1.77
MSH6P52701 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC26.1■■□□□ 1.77
MSH6P52701 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
MSH6P52701 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC26.1■■□□□ 1.77
MSH6P52701 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC26.1■■□□□ 1.77
MSH6P52701 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC26.1■■□□□ 1.77
MSH6P52701 AC008608.2-201ENST00000606089 416 ntBASIC26.1■■□□□ 1.77
MSH6P52701 PRKN-208ENST00000610470 531 ntTSL 2 BASIC26.1■■□□□ 1.77
MSH6P52701 PRKN-209ENST00000612485 225 ntTSL 5 BASIC26.1■■□□□ 1.77
MSH6P52701 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC26.1■■□□□ 1.77
MSH6P52701 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC26.1■■□□□ 1.77
MSH6P52701 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC26.1■■□□□ 1.77
MSH6P52701 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC26.1■■□□□ 1.77
MSH6P52701 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC26.1■■□□□ 1.77
MSH6P52701 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC26.1■■□□□ 1.77
MSH6P52701 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC26.1■■□□□ 1.77
MSH6P52701 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC26.09■■□□□ 1.77
MSH6P52701 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
MSH6P52701 POM121L3P-201ENST00000419331 1163 ntBASIC26.09■■□□□ 1.77
MSH6P52701 AC098831.1-202ENST00000438821 336 ntBASIC26.09■■□□□ 1.77
MSH6P52701 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
MSH6P52701 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC26.09■■□□□ 1.77
MSH6P52701 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
MSH6P52701 AC027796.2-201ENST00000575326 344 ntBASIC26.09■■□□□ 1.77
MSH6P52701 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC26.09■■□□□ 1.77
MSH6P52701 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
MSH6P52701 HOXB1-202ENST00000577092 1414 ntBASIC26.09■■□□□ 1.77
MSH6P52701 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
MSH6P52701 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
MSH6P52701 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms