Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.22□□□□□ -2.05
PCDHA1Q9Y5I3 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
PCDHA1Q9Y5I3 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.22□□□□□ -2.05
PCDHA1Q9Y5I3 Y_RNA.83-201ENST00000363005 113 ntBASIC2.22□□□□□ -2.05
PCDHA1Q9Y5I3 RNU6-653P-201ENST00000363074 106 ntBASIC2.22□□□□□ -2.05
PCDHA1Q9Y5I3 RNU6-674P-201ENST00000363831 107 ntBASIC2.22□□□□□ -2.05
PCDHA1Q9Y5I3 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.22□□□□□ -2.05
PCDHA1Q9Y5I3 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.22□□□□□ -2.05
PCDHA1Q9Y5I3 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC2.22□□□□□ -2.05
PCDHA1Q9Y5I3 SNORA63D-201ENST00000364359 132 ntBASIC2.21□□□□□ -2.06
PCDHA1Q9Y5I3 MIR583-201ENST00000384846 75 ntBASIC2.21□□□□□ -2.06
PCDHA1Q9Y5I3 MIR526A2-201ENST00000390198 65 ntBASIC2.21□□□□□ -2.06
PCDHA1Q9Y5I3 RPS27P1-201ENST00000450552 247 ntBASIC2.21□□□□□ -2.06
PCDHA1Q9Y5I3 RNU6-138P-201ENST00000515952 107 ntBASIC2.21□□□□□ -2.06
PCDHA1Q9Y5I3 RNA5SP182-201ENST00000516064 82 ntBASIC2.21□□□□□ -2.06
PCDHA1Q9Y5I3 AC011604.1-201ENST00000545978 196 ntBASIC2.21□□□□□ -2.06
PCDHA1Q9Y5I3 MIR3668-201ENST00000582138 75 ntBASIC2.21□□□□□ -2.06
PCDHA1Q9Y5I3 AC022217.4-201ENST00000604389 163 ntBASIC2.21□□□□□ -2.06
PCDHA1Q9Y5I3 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC2.21□□□□□ -2.06
PCDHA1Q9Y5I3 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
PCDHA1Q9Y5I3 Y_RNA.785-201ENST00000384290 109 ntBASIC2.2□□□□□ -2.06
PCDHA1Q9Y5I3 SNORA26.9-201ENST00000391322 122 ntBASIC2.2□□□□□ -2.06
PCDHA1Q9Y5I3 AL445685.2-201ENST00000422551 342 ntBASIC2.2□□□□□ -2.06
PCDHA1Q9Y5I3 RPL23AP54-201ENST00000495129 419 ntBASIC2.2□□□□□ -2.06
PCDHA1Q9Y5I3 AC100767.1-201ENST00000528178 123 ntBASIC2.2□□□□□ -2.06
PCDHA1Q9Y5I3 Y_RNA.802-201ENST00000614892 130 ntBASIC2.2□□□□□ -2.06
PCDHA1Q9Y5I3 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.2□□□□□ -2.06
PCDHA1Q9Y5I3 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.2□□□□□ -2.06
PCDHA1Q9Y5I3 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.2□□□□□ -2.06
PCDHA1Q9Y5I3 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.2□□□□□ -2.06
PCDHA1Q9Y5I3 MIR411-201ENST00000362239 96 ntBASIC2.19□□□□□ -2.06
PCDHA1Q9Y5I3 Y_RNA.274-201ENST00000364714 101 ntBASIC2.19□□□□□ -2.06
PCDHA1Q9Y5I3 Y_RNA.293-201ENST00000364908 93 ntBASIC2.19□□□□□ -2.06
PCDHA1Q9Y5I3 SNORA8.3-201ENST00000384679 139 ntBASIC2.19□□□□□ -2.06
PCDHA1Q9Y5I3 MIR626-201ENST00000385032 94 ntBASIC2.19□□□□□ -2.06
PCDHA1Q9Y5I3 RNU6-907P-201ENST00000390924 102 ntBASIC2.19□□□□□ -2.06
PCDHA1Q9Y5I3 SNORA40.18-201ENST00000391200 128 ntBASIC2.19□□□□□ -2.06
PCDHA1Q9Y5I3 RNU6-717P-201ENST00000459076 104 ntBASIC2.19□□□□□ -2.06
PCDHA1Q9Y5I3 RNU6-437P-201ENST00000459408 95 ntBASIC2.19□□□□□ -2.06
PCDHA1Q9Y5I3 AC090255.1-201ENST00000495779 349 ntBASIC2.19□□□□□ -2.06
PCDHA1Q9Y5I3 RNU6-548P-201ENST00000517083 115 ntBASIC2.19□□□□□ -2.06
PCDHA1Q9Y5I3 Z83818.1-201ENST00000603584 150 ntBASIC2.19□□□□□ -2.06
PCDHA1Q9Y5I3 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
PCDHA1Q9Y5I3 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.19□□□□□ -2.06
PCDHA1Q9Y5I3 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
PCDHA1Q9Y5I3 RNU6-112P-201ENST00000363599 104 ntBASIC2.18□□□□□ -2.06
PCDHA1Q9Y5I3 Y_RNA.297-201ENST00000364950 91 ntBASIC2.18□□□□□ -2.06
PCDHA1Q9Y5I3 RNA5SP37-201ENST00000365420 130 ntBASIC2.18□□□□□ -2.06
PCDHA1Q9Y5I3 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
PCDHA1Q9Y5I3 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.18□□□□□ -2.06
PCDHA1Q9Y5I3 AL138752.1-201ENST00000452964 351 ntBASIC2.18□□□□□ -2.06
PCDHA1Q9Y5I3 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.18□□□□□ -2.06
PCDHA1Q9Y5I3 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC2.18□□□□□ -2.06
PCDHA1Q9Y5I3 AP002004.2-201ENST00000531656 154 ntBASIC2.18□□□□□ -2.06
PCDHA1Q9Y5I3 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.18□□□□□ -2.06
PCDHA1Q9Y5I3 MIR6845-201ENST00000613182 61 ntBASIC2.18□□□□□ -2.06
PCDHA1Q9Y5I3 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.18□□□□□ -2.06
PCDHA1Q9Y5I3 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
PCDHA1Q9Y5I3 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
PCDHA1Q9Y5I3 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
PCDHA1Q9Y5I3 RNU6-296P-201ENST00000384608 107 ntBASIC2.17□□□□□ -2.06
PCDHA1Q9Y5I3 MIR520A-201ENST00000384862 85 ntBASIC2.17□□□□□ -2.06
PCDHA1Q9Y5I3 RNA5SP100-201ENST00000410903 110 ntBASIC2.17□□□□□ -2.06
PCDHA1Q9Y5I3 RNA5SP59-201ENST00000410922 110 ntBASIC2.17□□□□□ -2.06
PCDHA1Q9Y5I3 AC003989.2-201ENST00000440224 169 ntBASIC2.17□□□□□ -2.06
PCDHA1Q9Y5I3 AL606517.2-201ENST00000442855 241 ntBASIC2.17□□□□□ -2.06
PCDHA1Q9Y5I3 RNU6-1291P-201ENST00000516591 104 ntBASIC2.17□□□□□ -2.06
PCDHA1Q9Y5I3 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.17□□□□□ -2.06
PCDHA1Q9Y5I3 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
PCDHA1Q9Y5I3 CBX3P4-201ENST00000538909 354 ntBASIC2.17□□□□□ -2.06
PCDHA1Q9Y5I3 MIR4724-201ENST00000579485 89 ntBASIC2.17□□□□□ -2.06
PCDHA1Q9Y5I3 MIR2681-201ENST00000581814 105 ntBASIC2.17□□□□□ -2.06
PCDHA1Q9Y5I3 AL929325.1-201ENST00000603096 117 ntBASIC2.17□□□□□ -2.06
PCDHA1Q9Y5I3 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.17□□□□□ -2.06
PCDHA1Q9Y5I3 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.17□□□□□ -2.06
PCDHA1Q9Y5I3 AC008555.8-201ENST00000623602 2168 ntBASIC2.16□□□□□ -2.06
PCDHA1Q9Y5I3 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
PCDHA1Q9Y5I3 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
PCDHA1Q9Y5I3 AL596028.1-201ENST00000326971 197 ntBASIC2.16□□□□□ -2.06
PCDHA1Q9Y5I3 Y_RNA.203-201ENST00000364106 102 ntBASIC2.16□□□□□ -2.06
PCDHA1Q9Y5I3 Y_RNA.267-201ENST00000364679 109 ntBASIC2.16□□□□□ -2.06
PCDHA1Q9Y5I3 RNA5SP109-201ENST00000391010 116 ntBASIC2.16□□□□□ -2.06
PCDHA1Q9Y5I3 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.16□□□□□ -2.06
PCDHA1Q9Y5I3 AC245047.3-201ENST00000429428 127 ntBASIC2.16□□□□□ -2.06
PCDHA1Q9Y5I3 AC233266.1-201ENST00000454518 96 ntBASIC2.16□□□□□ -2.06
PCDHA1Q9Y5I3 HMGN2P23-201ENST00000456759 269 ntBASIC2.16□□□□□ -2.06
PCDHA1Q9Y5I3 Y_RNA.644-201ENST00000459006 113 ntBASIC2.16□□□□□ -2.06
PCDHA1Q9Y5I3 AC079804.2-201ENST00000490376 200 ntBASIC2.16□□□□□ -2.06
PCDHA1Q9Y5I3 Y_RNA.674-201ENST00000516362 113 ntBASIC2.16□□□□□ -2.06
PCDHA1Q9Y5I3 AC242852.1-201ENST00000612151 96 ntBASIC2.16□□□□□ -2.06
PCDHA1Q9Y5I3 AC244015.1-201ENST00000622301 99 ntBASIC2.16□□□□□ -2.06
PCDHA1Q9Y5I3 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.16□□□□□ -2.06
PCDHA1Q9Y5I3 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.16□□□□□ -2.06
PCDHA1Q9Y5I3 SNORA1B-201ENST00000362535 133 ntBASIC2.15□□□□□ -2.07
PCDHA1Q9Y5I3 Y_RNA.29-201ENST00000362570 113 ntBASIC2.15□□□□□ -2.07
PCDHA1Q9Y5I3 SNORA16B-201ENST00000364674 135 ntBASIC2.15□□□□□ -2.07
PCDHA1Q9Y5I3 RNA5SP496-201ENST00000391240 109 ntBASIC2.15□□□□□ -2.07
PCDHA1Q9Y5I3 RNU2-64P-201ENST00000411315 191 ntBASIC2.15□□□□□ -2.07
PCDHA1Q9Y5I3 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.15□□□□□ -2.07
PCDHA1Q9Y5I3 RNY3P16-201ENST00000516338 101 ntBASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 122.6 ms