Protein–RNA interactions for Protein: Q9Y5H2

PCDHGA11, Protocadherin gamma-A11, humanhuman

Predictions only

Length 935 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA11Q9Y5H2 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.2□□□□□ -1.9
PCDHGA11Q9Y5H2 Y_RNA.328-201ENST00000365208 113 ntBASIC3.2□□□□□ -1.9
PCDHGA11Q9Y5H2 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.2□□□□□ -1.9
PCDHGA11Q9Y5H2 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC3.2□□□□□ -1.9
PCDHGA11Q9Y5H2 AL606517.2-201ENST00000442855 241 ntBASIC3.2□□□□□ -1.9
PCDHGA11Q9Y5H2 AC104389.3-201ENST00000445629 235 ntBASIC3.2□□□□□ -1.9
PCDHGA11Q9Y5H2 SUMO2P16-201ENST00000519475 264 ntBASIC3.2□□□□□ -1.9
PCDHGA11Q9Y5H2 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC3.2□□□□□ -1.9
PCDHGA11Q9Y5H2 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.2□□□□□ -1.9
PCDHGA11Q9Y5H2 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.2□□□□□ -1.9
PCDHGA11Q9Y5H2 uc_338.1-201ENST00000612113 180 ntBASIC3.2□□□□□ -1.9
PCDHGA11Q9Y5H2 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
PCDHGA11Q9Y5H2 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.2□□□□□ -1.9
PCDHGA11Q9Y5H2 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
PCDHGA11Q9Y5H2 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.19□□□□□ -1.9
PCDHGA11Q9Y5H2 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
PCDHGA11Q9Y5H2 RNA5SP50-201ENST00000363731 107 ntBASIC3.19□□□□□ -1.9
PCDHGA11Q9Y5H2 SNORA62.3-201ENST00000365110 153 ntBASIC3.19□□□□□ -1.9
PCDHGA11Q9Y5H2 Y_RNA.362-201ENST00000365518 110 ntBASIC3.19□□□□□ -1.9
PCDHGA11Q9Y5H2 RNU6-424P-201ENST00000384367 105 ntBASIC3.19□□□□□ -1.9
PCDHGA11Q9Y5H2 RNU6-950P-201ENST00000384651 107 ntBASIC3.19□□□□□ -1.9
PCDHGA11Q9Y5H2 MIR134-201ENST00000385258 73 ntBASIC3.19□□□□□ -1.9
PCDHGA11Q9Y5H2 RNU6-938P-201ENST00000411285 103 ntBASIC3.19□□□□□ -1.9
PCDHGA11Q9Y5H2 AC092427.1-202ENST00000430569 476 ntBASIC3.19□□□□□ -1.9
PCDHGA11Q9Y5H2 CST9LP2-201ENST00000437612 320 ntBASIC3.19□□□□□ -1.9
PCDHGA11Q9Y5H2 AC114811.1-201ENST00000507207 168 ntBASIC3.19□□□□□ -1.9
PCDHGA11Q9Y5H2 MIR3922-201ENST00000585192 84 ntBASIC3.19□□□□□ -1.9
PCDHGA11Q9Y5H2 AC005000.2-201ENST00000605468 310 ntBASIC3.19□□□□□ -1.9
PCDHGA11Q9Y5H2 AL035470.1-201ENST00000622571 220 ntBASIC3.19□□□□□ -1.9
PCDHGA11Q9Y5H2 AC027279.3-201ENST00000625055 122 ntBASIC3.19□□□□□ -1.9
PCDHGA11Q9Y5H2 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
PCDHGA11Q9Y5H2 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PCDHGA11Q9Y5H2 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.18□□□□□ -1.9
PCDHGA11Q9Y5H2 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
PCDHGA11Q9Y5H2 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.18□□□□□ -1.9
PCDHGA11Q9Y5H2 RN7SKP200-201ENST00000410564 320 ntBASIC3.18□□□□□ -1.9
PCDHGA11Q9Y5H2 RNU1-143P-201ENST00000516296 146 ntBASIC3.18□□□□□ -1.9
PCDHGA11Q9Y5H2 SCARNA20.6-201ENST00000517251 106 ntBASIC3.18□□□□□ -1.9
PCDHGA11Q9Y5H2 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.18□□□□□ -1.9
PCDHGA11Q9Y5H2 AC034105.4-201ENST00000568304 277 ntBASIC3.18□□□□□ -1.9
PCDHGA11Q9Y5H2 MIR3126-201ENST00000577443 74 ntBASIC3.18□□□□□ -1.9
PCDHGA11Q9Y5H2 MIR3683-201ENST00000580847 82 ntBASIC3.18□□□□□ -1.9
PCDHGA11Q9Y5H2 MIR4305-201ENST00000583252 102 ntBASIC3.18□□□□□ -1.9
PCDHGA11Q9Y5H2 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC3.18□□□□□ -1.9
PCDHGA11Q9Y5H2 U1.23-201ENST00000610293 146 ntBASIC3.18□□□□□ -1.9
PCDHGA11Q9Y5H2 RNU1-68P-201ENST00000615382 146 ntBASIC3.18□□□□□ -1.9
PCDHGA11Q9Y5H2 AP001318.4-201ENST00000616637 121 ntBASIC3.18□□□□□ -1.9
PCDHGA11Q9Y5H2 U1.39-201ENST00000621562 146 ntBASIC3.18□□□□□ -1.9
PCDHGA11Q9Y5H2 AL596211.1-201ENST00000569873 2277 ntBASIC3.18□□□□□ -1.9
PCDHGA11Q9Y5H2 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
PCDHGA11Q9Y5H2 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
PCDHGA11Q9Y5H2 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
PCDHGA11Q9Y5H2 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PCDHGA11Q9Y5H2 RNU1-91P-201ENST00000364746 163 ntBASIC3.17□□□□□ -1.9
PCDHGA11Q9Y5H2 Y_RNA.544-201ENST00000384650 113 ntBASIC3.17□□□□□ -1.9
PCDHGA11Q9Y5H2 AC245166.1-201ENST00000521012 253 ntBASIC3.17□□□□□ -1.9
PCDHGA11Q9Y5H2 AC084364.2-201ENST00000546924 395 ntBASIC3.17□□□□□ -1.9
PCDHGA11Q9Y5H2 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC3.17□□□□□ -1.9
PCDHGA11Q9Y5H2 MIR3163-201ENST00000581592 73 ntBASIC3.17□□□□□ -1.9
PCDHGA11Q9Y5H2 MIR4276-201ENST00000584832 70 ntBASIC3.17□□□□□ -1.9
PCDHGA11Q9Y5H2 AC091932.4-201ENST00000623386 200 ntBASIC3.17□□□□□ -1.9
PCDHGA11Q9Y5H2 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
PCDHGA11Q9Y5H2 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
PCDHGA11Q9Y5H2 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.16□□□□□ -1.9
PCDHGA11Q9Y5H2 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
PCDHGA11Q9Y5H2 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC3.16□□□□□ -1.9
PCDHGA11Q9Y5H2 AL034345.1-201ENST00000407768 123 ntBASIC3.16□□□□□ -1.9
PCDHGA11Q9Y5H2 AL035398.1-201ENST00000430869 322 ntBASIC3.16□□□□□ -1.9
PCDHGA11Q9Y5H2 Z96811.1-201ENST00000445880 108 ntBASIC3.16□□□□□ -1.9
PCDHGA11Q9Y5H2 SNORA40.13-201ENST00000516379 120 ntBASIC3.16□□□□□ -1.9
PCDHGA11Q9Y5H2 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
PCDHGA11Q9Y5H2 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.9
PCDHGA11Q9Y5H2 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.15□□□□□ -1.9
PCDHGA11Q9Y5H2 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
PCDHGA11Q9Y5H2 MIR342-201ENST00000362212 99 ntBASIC3.15□□□□□ -1.91
PCDHGA11Q9Y5H2 RNU1-70P-201ENST00000362618 164 ntBASIC3.15□□□□□ -1.91
PCDHGA11Q9Y5H2 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
PCDHGA11Q9Y5H2 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC3.15□□□□□ -1.91
PCDHGA11Q9Y5H2 RNU6-830P-201ENST00000516353 107 ntBASIC3.15□□□□□ -1.91
PCDHGA11Q9Y5H2 AC068339.1-201ENST00000526965 141 ntBASIC3.15□□□□□ -1.91
PCDHGA11Q9Y5H2 MIR5009-201ENST00000578736 100 ntBASIC3.15□□□□□ -1.91
PCDHGA11Q9Y5H2 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC3.15□□□□□ -1.91
PCDHGA11Q9Y5H2 uc_338.25-201ENST00000613756 156 ntBASIC3.15□□□□□ -1.91
PCDHGA11Q9Y5H2 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.91
PCDHGA11Q9Y5H2 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
PCDHGA11Q9Y5H2 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
PCDHGA11Q9Y5H2 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.14□□□□□ -1.91
PCDHGA11Q9Y5H2 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
PCDHGA11Q9Y5H2 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.14□□□□□ -1.91
PCDHGA11Q9Y5H2 RNU1-33P-201ENST00000364249 162 ntBASIC3.14□□□□□ -1.91
PCDHGA11Q9Y5H2 U8.6-201ENST00000364939 135 ntBASIC3.14□□□□□ -1.91
PCDHGA11Q9Y5H2 Y_RNA.348-201ENST00000365403 103 ntBASIC3.14□□□□□ -1.91
PCDHGA11Q9Y5H2 SNORA27-201ENST00000384323 126 ntBASIC3.14□□□□□ -1.91
PCDHGA11Q9Y5H2 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.14□□□□□ -1.91
PCDHGA11Q9Y5H2 AC115115.1-201ENST00000449927 248 ntBASIC3.14□□□□□ -1.91
PCDHGA11Q9Y5H2 RN7SL293P-201ENST00000481765 281 ntBASIC3.14□□□□□ -1.91
PCDHGA11Q9Y5H2 RN7SL504P-201ENST00000494496 287 ntBASIC3.14□□□□□ -1.91
PCDHGA11Q9Y5H2 RNU6-970P-201ENST00000516312 107 ntBASIC3.14□□□□□ -1.91
PCDHGA11Q9Y5H2 MIR3158-1-201ENST00000583596 81 ntBASIC3.14□□□□□ -1.91
PCDHGA11Q9Y5H2 AC078899.2-201ENST00000595282 212 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms