Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 RPL12P50-201ENST00000603116 116 ntBASIC3.47□□□□□ -1.85
CHMP3Q9Y3E7 U6.108-201ENST00000637764 58 ntBASIC3.47□□□□□ -1.85
CHMP3Q9Y3E7 AC008264.2-201ENST00000610193 3731 ntBASIC3.47□□□□□ -1.85
CHMP3Q9Y3E7 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.46□□□□□ -1.86
CHMP3Q9Y3E7 MIR450A1-201ENST00000362262 91 ntBASIC3.46□□□□□ -1.86
CHMP3Q9Y3E7 MIR548A2-201ENST00000384956 97 ntBASIC3.46□□□□□ -1.86
CHMP3Q9Y3E7 MIR1263-201ENST00000408324 86 ntBASIC3.46□□□□□ -1.86
CHMP3Q9Y3E7 RNA5SP184-201ENST00000411071 108 ntBASIC3.46□□□□□ -1.86
CHMP3Q9Y3E7 UBBP3-201ENST00000445497 241 ntBASIC3.46□□□□□ -1.86
CHMP3Q9Y3E7 CYP2C59P-201ENST00000457790 269 ntBASIC3.46□□□□□ -1.86
CHMP3Q9Y3E7 AC018868.1-201ENST00000491307 315 ntBASIC3.46□□□□□ -1.86
CHMP3Q9Y3E7 RNU7-99P-201ENST00000516271 62 ntBASIC3.46□□□□□ -1.86
CHMP3Q9Y3E7 IGHVIII-67-2-201ENST00000519849 88 ntBASIC3.46□□□□□ -1.86
CHMP3Q9Y3E7 NDUFA5P6-201ENST00000542110 379 ntBASIC3.46□□□□□ -1.86
CHMP3Q9Y3E7 AL356280.1-201ENST00000603614 379 ntBASIC3.46□□□□□ -1.86
CHMP3Q9Y3E7 AC062016.1-201ENST00000355719 319 ntBASIC3.45□□□□□ -1.86
CHMP3Q9Y3E7 MIR196B-201ENST00000384852 84 ntBASIC3.45□□□□□ -1.86
CHMP3Q9Y3E7 SNORA11.2-201ENST00000408318 127 ntBASIC3.45□□□□□ -1.86
CHMP3Q9Y3E7 RPS15AP28-201ENST00000435088 386 ntBASIC3.45□□□□□ -1.86
CHMP3Q9Y3E7 RNA5SP385-201ENST00000515947 110 ntBASIC3.45□□□□□ -1.86
CHMP3Q9Y3E7 RNU6-126P-201ENST00000516685 103 ntBASIC3.45□□□□□ -1.86
CHMP3Q9Y3E7 RNU6-667P-201ENST00000517186 102 ntBASIC3.45□□□□□ -1.86
CHMP3Q9Y3E7 MIR4672-201ENST00000583126 81 ntBASIC3.45□□□□□ -1.86
CHMP3Q9Y3E7 AC008507.4-201ENST00000585464 127 ntBASIC3.45□□□□□ -1.86
CHMP3Q9Y3E7 AL355297.2-201ENST00000604792 129 ntBASIC3.45□□□□□ -1.86
CHMP3Q9Y3E7 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC3.45□□□□□ -1.86
CHMP3Q9Y3E7 MIR6079-201ENST00000635807 62 ntBASIC3.45□□□□□ -1.86
CHMP3Q9Y3E7 MIR338-201ENST00000636369 67 ntBASIC3.45□□□□□ -1.86
CHMP3Q9Y3E7 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.45□□□□□ -1.86
CHMP3Q9Y3E7 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
CHMP3Q9Y3E7 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
CHMP3Q9Y3E7 Y_RNA.346-201ENST00000365385 112 ntBASIC3.44□□□□□ -1.86
CHMP3Q9Y3E7 RNU6-880P-201ENST00000384526 107 ntBASIC3.44□□□□□ -1.86
CHMP3Q9Y3E7 MIR887-201ENST00000401258 79 ntBASIC3.44□□□□□ -1.86
CHMP3Q9Y3E7 RNU6-1146P-201ENST00000516282 102 ntBASIC3.44□□□□□ -1.86
CHMP3Q9Y3E7 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.44□□□□□ -1.86
CHMP3Q9Y3E7 uc_338.28-201ENST00000612082 187 ntBASIC3.44□□□□□ -1.86
CHMP3Q9Y3E7 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.44□□□□□ -1.86
CHMP3Q9Y3E7 MIR376A2-201ENST00000636782 80 ntBASIC3.44□□□□□ -1.86
CHMP3Q9Y3E7 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.44□□□□□ -1.86
CHMP3Q9Y3E7 RNU6-888P-201ENST00000363010 101 ntBASIC3.43□□□□□ -1.86
CHMP3Q9Y3E7 SNORD114-6-201ENST00000364393 72 ntBASIC3.43□□□□□ -1.86
CHMP3Q9Y3E7 RNU6-220P-201ENST00000390919 107 ntBASIC3.43□□□□□ -1.86
CHMP3Q9Y3E7 MTATP6P21-201ENST00000440681 189 ntBASIC3.43□□□□□ -1.86
CHMP3Q9Y3E7 AL109933.2-201ENST00000452651 260 ntBASIC3.43□□□□□ -1.86
CHMP3Q9Y3E7 AC003982.1-202ENST00000469928 248 ntBASIC3.43□□□□□ -1.86
CHMP3Q9Y3E7 AL591926.4-201ENST00000616895 298 ntBASIC3.43□□□□□ -1.86
CHMP3Q9Y3E7 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.43□□□□□ -1.86
CHMP3Q9Y3E7 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC3.43□□□□□ -1.86
CHMP3Q9Y3E7 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
CHMP3Q9Y3E7 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.42□□□□□ -1.86
CHMP3Q9Y3E7 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.42□□□□□ -1.86
CHMP3Q9Y3E7 MIR126-201ENST00000362291 85 ntBASIC3.42□□□□□ -1.86
CHMP3Q9Y3E7 SNORD77.3-201ENST00000391113 65 ntBASIC3.42□□□□□ -1.86
CHMP3Q9Y3E7 AL117342.1-201ENST00000404861 406 ntBASIC3.42□□□□□ -1.86
CHMP3Q9Y3E7 EDDM3CP-201ENST00000415977 425 ntBASIC3.42□□□□□ -1.86
CHMP3Q9Y3E7 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.42□□□□□ -1.86
CHMP3Q9Y3E7 CALM2P4-201ENST00000430810 426 ntBASIC3.42□□□□□ -1.86
CHMP3Q9Y3E7 RNU6-693P-201ENST00000516134 107 ntBASIC3.42□□□□□ -1.86
CHMP3Q9Y3E7 RNU6-1149P-201ENST00000516810 97 ntBASIC3.42□□□□□ -1.86
CHMP3Q9Y3E7 AC022217.4-201ENST00000604389 163 ntBASIC3.42□□□□□ -1.86
CHMP3Q9Y3E7 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.42□□□□□ -1.86
CHMP3Q9Y3E7 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.42□□□□□ -1.86
CHMP3Q9Y3E7 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.41□□□□□ -1.86
CHMP3Q9Y3E7 RNU6-859P-201ENST00000362728 107 ntBASIC3.41□□□□□ -1.86
CHMP3Q9Y3E7 Y_RNA.116-201ENST00000363292 103 ntBASIC3.41□□□□□ -1.86
CHMP3Q9Y3E7 MIR181B1-201ENST00000385240 110 ntBASIC3.41□□□□□ -1.86
CHMP3Q9Y3E7 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.41□□□□□ -1.86
CHMP3Q9Y3E7 AL359075.3-201ENST00000613288 217 ntBASIC3.41□□□□□ -1.86
CHMP3Q9Y3E7 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CHMP3Q9Y3E7 AC018630.2-201ENST00000534866 2403 ntBASIC3.4□□□□□ -1.86
CHMP3Q9Y3E7 MIR449A-201ENST00000362113 91 ntBASIC3.4□□□□□ -1.87
CHMP3Q9Y3E7 RNU6-1292P-201ENST00000383856 107 ntBASIC3.4□□□□□ -1.87
CHMP3Q9Y3E7 Y_RNA.528-201ENST00000384575 108 ntBASIC3.4□□□□□ -1.87
CHMP3Q9Y3E7 RNU2-63P-201ENST00000410792 194 ntBASIC3.4□□□□□ -1.87
CHMP3Q9Y3E7 RNA5SP21-201ENST00000410917 96 ntBASIC3.4□□□□□ -1.87
CHMP3Q9Y3E7 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC3.4□□□□□ -1.87
CHMP3Q9Y3E7 SCARNA15-202ENST00000516881 127 ntBASIC3.4□□□□□ -1.87
CHMP3Q9Y3E7 RNU6-341P-201ENST00000516973 96 ntBASIC3.4□□□□□ -1.87
CHMP3Q9Y3E7 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.4□□□□□ -1.87
CHMP3Q9Y3E7 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
CHMP3Q9Y3E7 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.39□□□□□ -1.87
CHMP3Q9Y3E7 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.39□□□□□ -1.87
CHMP3Q9Y3E7 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CHMP3Q9Y3E7 SNORA1B-201ENST00000362535 133 ntBASIC3.39□□□□□ -1.87
CHMP3Q9Y3E7 SNORD56.5-201ENST00000364281 72 ntBASIC3.39□□□□□ -1.87
CHMP3Q9Y3E7 SNORD24-201ENST00000383884 75 ntBASIC3.39□□□□□ -1.87
CHMP3Q9Y3E7 MIR518F-201ENST00000384973 87 ntBASIC3.39□□□□□ -1.87
CHMP3Q9Y3E7 RNA5SP492-201ENST00000411330 114 ntBASIC3.39□□□□□ -1.87
CHMP3Q9Y3E7 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC3.39□□□□□ -1.87
CHMP3Q9Y3E7 ZNF271P-202ENST00000465539 1970 ntBASIC3.39□□□□□ -1.87
CHMP3Q9Y3E7 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.39□□□□□ -1.87
CHMP3Q9Y3E7 RNA5SP125-201ENST00000364843 120 ntBASIC3.38□□□□□ -1.87
CHMP3Q9Y3E7 Y_RNA.309-201ENST00000365046 111 ntBASIC3.38□□□□□ -1.87
CHMP3Q9Y3E7 Y_RNA.366-201ENST00000365540 102 ntBASIC3.38□□□□□ -1.87
CHMP3Q9Y3E7 Y_RNA.495-201ENST00000384435 112 ntBASIC3.38□□□□□ -1.87
CHMP3Q9Y3E7 AL353689.1-201ENST00000438895 199 ntBASIC3.38□□□□□ -1.87
CHMP3Q9Y3E7 MIR4513-201ENST00000581077 86 ntBASIC3.38□□□□□ -1.87
CHMP3Q9Y3E7 MIR3162-201ENST00000581818 82 ntBASIC3.38□□□□□ -1.87
CHMP3Q9Y3E7 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 108.9 ms